mRNA_H-paniculata_contig53050.12706.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Match: M5BUS0_THACB (Rhizoctonia solani AG1-IB WGS project CAOJ00000000 data, isolate 7/3/14, contig 10759 n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=M5BUS0_THACB) HSP 1 Score: 63.9 bits (154), Expect = 1.650e-9 Identity = 35/101 (34.65%), Postives = 54/101 (53.47%), Query Frame = 1
Query: 1 WVADSGAAAHMTPSNELMFD-CETCSNLFVTVANGETLPIEEYGKMLVWTKDR-GEIHKFSLSRVAHVPGLDTNLFSLQNVVNQGLTVCLKEDGAAIALPN 297
W+ DSGA+ HMTP+ + C S + V + NG+ +P G++ V ++R G+ + + V HVP L NL S+Q +VN G V ++ AI N
Sbjct: 327 WLLDSGASRHMTPNRQWFATYCPLASPVSVRIGNGKQIPAAGIGRIFVTLRNRQGKDTEAVIKEVLHVPDLQANLISVQELVNGGTNVVFQKGSGAILTAN 427
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Match: A0A8H8P649_9AGAM (Copia-like polyprotein/retrotransposon n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8P649_9AGAM) HSP 1 Score: 62.8 bits (151), Expect = 4.090e-9 Identity = 35/101 (34.65%), Postives = 52/101 (51.49%), Query Frame = 1
Query: 1 WVADSGAAAHMTPSNELMFD-CETCSNLFVTVANGETLPIEEYGKMLVWTKDR-GEIHKFSLSRVAHVPGLDTNLFSLQNVVNQGLTVCLKEDGAAIALPN 297
W+ DSGA+ HMTP+ C + V V N + +P G++ + ++R G HK + V HVP L NL S+Q +VN G V +D A+ + N
Sbjct: 329 WLLDSGASKHMTPNQHWFATYCPLTLPVHVQVGNRKQIPAAGIGRVFIVMQNRQGTEHKAVIKEVLHVPKLQANLMSVQELVNNGTEVAFGKDYGAVLVAN 429
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE) HSP 1 Score: 60.1 bits (144), Expect = 3.900e-8 Identity = 34/102 (33.33%), Postives = 52/102 (50.98%), Query Frame = 1
Query: 1 WVADSGAAAHMTPSNELMFDCETCSNLFVTVANGETLPIEEYGKMLVWTKDRG-EIHKFSLSRVAHVPGLDTNLFSLQNVVNQGLTVCLKEDGAAIALPNGS 303
W+ DSGA+AHMT E ++T+A+G+ I G ++ D E+ + +S V +VPGL TNL S++ + + L V DG I P G+
Sbjct: 275 WIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDVSFNSDGCRIIDPKGN 376
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Match: A0A2N9G1Z9_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G1Z9_FAGSY) HSP 1 Score: 54.3 bits (129), Expect = 4.040e-6 Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 1
Query: 1 WVADSGAAAHMTPSNELMFDCETCS-NLFVTVANGETLPIEEYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSL 228
W++D+GA H TP + DC + N FVTV NG++LPI G + H F L +V HVP + ++L S+
Sbjct: 408 WISDTGATDHFTPDITHIPDCHAYTGNDFVTVGNGQSLPITHSGNSQLHASS----HLFHLRKVLHVPSMSSSLLSV 480
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Match: A0A2N9EUP4_FAGSY (Integrase catalytic domain-containing protein n=5 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EUP4_FAGSY) HSP 1 Score: 54.3 bits (129), Expect = 4.150e-6 Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 1
Query: 1 WVADSGAAAHMTPSNELMFDCETCS-NLFVTVANGETLPIEEYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSL 228
W++D+GA H TP + DC + N FVTV NG++LPI G + H F L +V HVP + ++L S+
Sbjct: 366 WISDTGATDHFTPDITHIPDCHAYTGNDFVTVGNGQSLPITHSGNSQLHASS----HLFHLRKVLHVPSMSSSLLSV 438
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Match: UPI001A3D4AD4 (uncharacterized protein n=1 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A3D4AD4) HSP 1 Score: 52.8 bits (125), Expect = 1.430e-5 Identity = 31/107 (28.97%), Postives = 51/107 (47.66%), Query Frame = 1
Query: 1 WVADSGAAAHMTPSNELMFDCETCSNLFVTVANGETLPIEEYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQNVVNQGLTVCLKEDGAAIALPNGSDLLCRK 321
W+ DSGA HM ++E M TC + + A E L ++ G +W D L V ++P L++NL S+Q ++ G V E G I +G+ + ++
Sbjct: 337 WIVDSGATHHMV-NDERMLLTSTCKDGQICTAGNERLQVKAIGDASLWVGDV----TIQLLDVLYMPKLNSNLLSVQGLIENGARVTFDEFGTIIKQNDGTQIQYKR 438
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Match: UPI000B78030F (uncharacterized protein LOC110715866 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B78030F) HSP 1 Score: 51.2 bits (121), Expect = 4.490e-5 Identity = 31/113 (27.43%), Postives = 53/113 (46.90%), Query Frame = 1
Query: 1 WVADSGAAAHMTPSNELMFDCETCSNLFVTVANGETLPIEEYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQNVVNQGLTVCLKEDGAAIALPNGSDLLCRKIGNMTF 339
W+ DSG HMT ++ + + + + + NG + E G + V TK K V +VPGL+ NL S+ +V G ++ K++ AI P + + K+ + F
Sbjct: 322 WLIDSGCTNHMTKQFDIFTNIDKYVKIPIRMGNGSMVKSEGKGTVAVQTKQGTRFIK----DVLYVPGLNQNLLSVPQMVQNGYSIHFKDESCAILDPQKNKIANVKMQHKRF 430
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Match: A0A2I0WQU9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WQU9_9ASPA) HSP 1 Score: 50.4 bits (119), Expect = 8.590e-5 Identity = 33/97 (34.02%), Postives = 47/97 (48.45%), Query Frame = 1
Query: 1 WVADSGAAAHMTPSNELMFDCETCSNL-FVTVANGETLPIEEYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQNVV-NQGLTVCLKEDGAAI 285
W+ DSGA H+T N + + VTVANG +LPI YG+ L+ D K L R+ HVP L NL S+ + + + + +G I
Sbjct: 322 WILDSGATNHITHDNASLHQSAPYTGSDSVTVANGSSLPIHNYGQGLLPLPDTPR--KLHLLRLLHVPHLTHNLLSVSKLTKDNNIAITFDSNGFTI 416 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig53050.12706.1 >prot_H-paniculata_contig53050.12706.1 ID=prot_H-paniculata_contig53050.12706.1|Name=mRNA_H-paniculata_contig53050.12706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp MTPSNELMFDCETCSNLFVTVANGETLPIEEYGKMLVWTKDRGEIHKFSLback to top mRNA from alignment at H-paniculata_contig53050:751..1095+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig53050.12706.1 ID=mRNA_H-paniculata_contig53050.12706.1|Name=mRNA_H-paniculata_contig53050.12706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig53050:751..1095+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig53050:751..1095+ >mRNA_H-paniculata_contig53050.12706.1 ID=mRNA_H-paniculata_contig53050.12706.1|Name=mRNA_H-paniculata_contig53050.12706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig53050:751..1095+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |