mRNA_H-paniculata_contig53013.12702.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53013.12702.1
Unique NamemRNA_H-paniculata_contig53013.12702.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53013.12702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53013contigH-paniculata_contig53013:27..523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size497
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53013.12702.1prot_H-paniculata_contig53013.12702.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53013 113..448 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930536.6069353-UTR-H-paniculata_contig53013:26..1121622930536.6069353-UTR-H-paniculata_contig53013:26..112Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53013 27..112 +
1691481337.9894373-UTR-H-paniculata_contig53013:26..1121691481337.9894373-UTR-H-paniculata_contig53013:26..112Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53013 27..112 +
1622930536.6349266-UTR-H-paniculata_contig53013:448..5231622930536.6349266-UTR-H-paniculata_contig53013:448..523Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53013 449..523 +
1691481338.0094037-UTR-H-paniculata_contig53013:448..5231691481338.0094037-UTR-H-paniculata_contig53013:448..523Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53013 449..523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930536.622393-CDS-H-paniculata_contig53013:112..4481622930536.622393-CDS-H-paniculata_contig53013:112..448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53013 113..448 +
1691481337.999694-CDS-H-paniculata_contig53013:112..4481691481337.999694-CDS-H-paniculata_contig53013:112..448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53013 113..448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53013.12702.1

>prot_H-paniculata_contig53013.12702.1 ID=prot_H-paniculata_contig53013.12702.1|Name=mRNA_H-paniculata_contig53013.12702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MAASDAPPVPASTDAELCMKADGWARGWSKLTAADHGGDDGAATVVVAMA
AAGVRLVGAGAVVAAVPVTDTVVAAVSPPETSKPMVAAGVSPTPTSTDAE
LRMKADGWARG*
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mRNA from alignment at H-paniculata_contig53013:27..523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53013.12702.1 ID=mRNA_H-paniculata_contig53013.12702.1|Name=mRNA_H-paniculata_contig53013.12702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=497bp|location=Sequence derived from alignment at H-paniculata_contig53013:27..523+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGTGTTGCATAGTCGGACGTCATGGGCGCTCGGGTCAGATGAAAGGCG
ACATCAGCAGAGTCACCGTCCGGAATAACCGTACCCATGGCCGCTTCCGA
TGCACCTCCCGTGCCAGCGTCCACCGACGCCGAGCTCTGCATGAAGGCTG
ACGGCTGGGCTCGCGGGTGGTCGAAGCTCACGGCGGCCGACCACGGCGGT
GATGATGGCGCGGCGACGGTGGTAGTGGCGATGGCGGCGGCGGGGGTGAG
GCTGGTGGGGGCGGGGGCGGTGGTAGCGGCGGTGCCAGTAACGGACACAG
TGGTGGCGGCGGTGTCACCTCCGGAGACCAGCAAGCCCATGGTCGCTGCT
GGTGTTTCTCCTACCCCGACGTCCACTGACGCCGAGCTTCGCATGAAGGC
TGACGGCTGGGCTCGCGGGTGATCGAAGCTCACGGCGGCCGACCACGGCG
GTGATGGTGGCGCGGCGACGATGGCAGTGGCGATGGCGGCGGTGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig53013:27..523+

>mRNA_H-paniculata_contig53013.12702.1 ID=mRNA_H-paniculata_contig53013.12702.1|Name=mRNA_H-paniculata_contig53013.12702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig53013:27..523+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGCTTCCGATGCACCTCCCGTGCCAGCGTCCACCGACGCCGAGCT
CTGCATGAAGGCTGACGGCTGGGCTCGCGGGTGGTCGAAGCTCACGGCGG
CCGACCACGGCGGTGATGATGGCGCGGCGACGGTGGTAGTGGCGATGGCG
GCGGCGGGGGTGAGGCTGGTGGGGGCGGGGGCGGTGGTAGCGGCGGTGCC
AGTAACGGACACAGTGGTGGCGGCGGTGTCACCTCCGGAGACCAGCAAGC
CCATGGTCGCTGCTGGTGTTTCTCCTACCCCGACGTCCACTGACGCCGAG
CTTCGCATGAAGGCTGACGGCTGGGCTCGCGGGTGAATGGCCGCTTCCGA
TGCACCTCCCGTGCCAGCGTCCACCGACGCCGAGCTCTGCATGAAGGCTG
ACGGCTGGGCTCGCGGGTGGTCGAAGCTCACGGCGGCCGACCACGGCGGT
GATGATGGCGCGGCGACGGTGGTAGTGGCGATGGCGGCGGCGGGGGTGAG
GCTGGTGGGGGCGGGGGCGGTGGTAGCGGCGGTGCCAGTAACGGACACAG
TGGTGGCGGCGGTGTCACCTCCGGAGACCAGCAAGCCCATGGTCGCTGCT
GGTGTTTCTCCTACCCCGACGTCCACTGACGCCGAGCTTCGCATGAAGGC
TGACGGCTGGGCTCGCGGGTGA
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