mRNA_H-paniculata_contig5285.12664.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5285.12664.1 vs. uniprot
Match: D8LF16_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF16_ECTSI) HSP 1 Score: 815 bits (2105), Expect = 1.300e-258 Identity = 654/1649 (39.66%), Postives = 807/1649 (48.94%), Query Frame = 3
Query: 876 GVVNIVSCREVVDGELGRLEKELERQQARLSRRDRRSGVDALVAKILLHR--PKASYINHSNAGSSEDSISPRGARGRGRKNFNFLENSSSSGNVSRGRSRV--GEVEVWGGSNSAG---------LSDYFSDDTDGDGALGIEAGGSGKVRGDAGRCGPIRPSGDGVEINGGLEGRMKPE----------AACDVILEAVPTGDMQKEMMDSVPVEMQGVGPPRPLPFIAYDLQTALESVQHIATQTLAGVVHAEATSGPSRRNFDHHXXXXXXXXXFSQESXXXXXXXXXXXXXXXXXXXXXXXGAAAVFAKDQASAAGLEDGWETAWPPRQLTAALTLVTARQMAHAMRCDSEPLIQIWMRCFTPLEVKHRDALWAALSPYPTDSYDRVL--GVYHRQLVCGLVTLFAQVHVSWSFLAKPSDDPAVAVGLLSLRLKTSWF-TALDVDNHVNSDAGIHGDNGETAPLSPSSGNGEDVGNEKSSGGTWGKRTSGQ--RGPEQWDERKTLKFIRDYGSYLDADVLACAASCREMAQALHETLRLAAQCQHYKDKEKHLHQLIRGVRTPTGT-------PLLHH--------TP-------VSTPGTRTP-----TLLSPSSPSFHSSTVSPLAISAAIDRAAAAAPTSS------TRYVATRPMEEEAVRKILGL--GPARGHHEGAGGML-GRGHR-----DGVEGMGTAASEGAGDKRGDAKDSGSEEHPPGSAPLCLLLKNLGELFRWDAASAAEMCADAFPGVRPWNVHHALY--EDSPWGKVESATSFPAAT--------PSSASVSGRYSVGD-DVSTRYDTAFHTYLWATISKQPAICRRDWKMVQRCLQLSLRIGSKLRSLPSSHPLHVFCLAATRNFG----GDSCSTGRDNNVASP---LMMDSRPGWNNRTFGNRLAQSWQSIHREEGGAGAWEARNG---GIGD----GSGSACRRYSDIVEEVALMWCQDPNGVSLDPLWLLQKLRVHKNWSIAFHICAALTRSWEEAREDLYDIGDGESLNVSSPHRHSHTEGTHTYGAGLASALTVFDTLAEACFVSFEDGNTVVLSSALGAIWAADGAMRRASSAGDPDKAGRNVGGDKEQLSLWFHGQGNVSRSGTMGEEARRAQAGAYSPRARENDLGQYQGGGGGISAIPRSREIGLGVESGGQASGRTRSEYKGDCDASPSKRDGHDRTGAGIGEPSAGPGGGELNAGSWTRDSRTVDVIWSLMQRCRDYAPRGEEGDGGVRHGGMERGGNR----------GRGVSMGSESAA------------RDWTAAAALLLVDLAEALADGVGPQAAGDVLAACPCLLEAMPPKFFQGLADRQAALYREQALEATLLQQTMTGVWALGGVSKPGVATAAVAALADNDQKKFETRGGAGSDGRNG-ASPLGPRLAWLACEELTSFFQQNDNT---------LPGRGGLGGRS--------QFVTRLESTTDHAGI---TARRPWQWSAGVEEVLRHGISRS-----------------GLNLLLPGRTHRGTTLIPTSPCAFCGLVLAGTASLSRESSGKGRGTATNDVASSNTGEDLDAAIL--TCGHGFHVRCMEERVARLTERDGTWP---WQEMVGGGAHMSIHMPCAEC 5345
GV+N+VSC+ VV E+ RLE ELERQ+ARL+RR+RRS +LVAK+L H+ P A + S+DS SP ARG GR ++G SR RS + G W NS G L+D SDD G A A + +V G+A G DG I+ ACD+ LEAV T +Q E++ + VE+ GV PPRPLP AYDLQTALESVQH ATQTLAGVV A A G + D+ G+AA A++ AAGL + WE AWPPR+LTAAL LVTARQMAHAMRCD+EPLIQIWMRCFTP++ KHR LW L+P P+ + DR L G +HRQLVCGL+TL+AQVH+SW FLA+P DDP AVGL SLRL+T+WF T DV SP S+ G+W + G RGP QWDE K + FI+DYG+YL+ D +A AASCREM AL E LRLA QC+ YK KE+ LHQL+RG RTP+ T P + H TP +ST GTRTP T++SPS +F S + A+SA + +++ PMEE+AVRK LGL PA + AG ++ HR + +G+G + E G R S + + PG APLCLLL NL ELFRWD A+AAEMCADAFPGVRPWNVHHAL+ +D PW E T T P+ A V+G GD D TR D AFH YLWA + K P CR DWK++QRCLQLSLR+ +KLRSLPS HPLH FC AATRNF D +T R+ V P D R ++N ++ W++ GG+G G+ D G GSA RRYSD+VEE+ WC+ + LDPLWLL KLR HKNW +AF IC A+ SWEE E + + G + + E H Y + L S L VFDTLA+ACF +F DG+T L++ALG WAADGA+RR S P + GG GQ V+ S ++ E Q AY A +A E G G Q S R+ G C G W +SR VDV+ L +RC P G + GG + G + G G SM SE AEA+ DGVGP+A GDVLAACP LLE +PPKFFQ LADRQAAL +++ALEA LL Q +WA G ++ T GAG G + ASPLGPRLAWLACEELTSFFQ N N+ L G G G S Q R AGI R + S G ++ L + R LNL+LPG HRG P SPC FCGL L+G VA GE+ + ++ CG G H RC+ +G W W E A + PC +C
Sbjct: 379 GVINLVSCQGVVQAEVSRLEGELERQRARLARRNRRSSARSLVAKML-HKCGPSALF--------SDDSPSPT-ARGSGR--------GPAAGAFSRRRSSLAGGTGASWREENSGGGLGRPSDGDLTDS-SDDISGTVARRATAAAA-RVSGEASGVGQGE---DGFSIDDXXXXXXXXXXXXXXXXXXXGACDIFLEAVSTAGLQDELLCNRDVEVLGVDPPRPLPAAAYDLQTALESVQHFATQTLAGVVQAAAVRGSDLYDNDY------------------DPLSGARSPRHLAGGGRAGKGSAAKEAREGGVAAGLVEEWEAAWPPRELTAALGLVTARQMAHAMRCDTEPLIQIWMRCFTPVDAKHRTKLWGGLAPPPSVN-DRFLEAGRWHRQLVCGLLTLYAQVHMSWPFLARPKDDPD-AVGLRSLRLETTWFGTQEDVGXXXXXXXXXXXXXXXXEEESPIGAG--------SAAGSWDEAGGGAVGRGPLQWDEEKAVGFIQDYGAYLEGDAVAAAASCREMEWALDEVLRLAEQCEDYKSKERVLHQLLRGPRTPSMTTVSGRSSPTVWHQRSAMFGTTPARSPANSISTTGTRTPGNWTPTIMSPSRAAFPSYQLPSEAMSAGGXXXXSGWKDGDGFGGTLDAALSSGPMEEDAVRKALGLLVPPA----DPAGNVVEDENHRRHANAEHGQGVGFSGHEAGGSGR---LLSQTTKQAPGGAPLCLLLNNLRELFRWDVAAAAEMCADAFPGVRPWNVHHALHRDQDKPWTTSEPVTPVGGGTARYQAQAPPAGAGVAG----GDGDGGTRTDAAFHAYLWAVLRKHPGECRGDWKVIQRCLQLSLRLSTKLRSLPSDHPLHSFCKAATRNFKRRRRADDPAT-RETGVRHPEGAFSTDGRGQFHN-------SRRWRAGGGSGGGSGMRTPTGDLRLGVEDSGETGDGSAWRRYSDVVEELVSQWCKHGDAFGLDPLWLLPKLRAHKNWPVAFRICGAIACSWEEQGERGHQMSTGVISHCHATAAADGLEEGHDYDS-LVSTLPVFDTLADACFATFNDGDTETLAAALGTTWAADGALRRVSLRARPPPLRGDDGGGVSP------GQQAVAASLSVEESQVLGQVSAYGNVA--------------AAAAAAGPEFGHQSPIGMQGSSSARA---GACAQEXXXXXXXXXXG-------------------WVEESRMVDVVRGLARRCSGQ-PVGADDAGGSNNDGGDADGRGDADLGCSSTGGGDASMASEDPEGGSXXXXXXXXXXXXXXXXXXXXXXXAEAVLDGVGPEATGDVLAACPHLLEGIPPKFFQDLADRQAALSQQRALEAALLHQATAAIWASRG-------------------RRRATVTGAGDTGDSSDASPLGPRLAWLACEELTSFFQDNANSASASPNARLLGGEPGSAGSSCAGSPPGLQHHHRATMEVFAAGIGGDNLSRVFNGSGGNDDGLFRSLRRKEPGSVSQGLVASMGVNLDLNLVLPGNAHRGAAFDPASPCGFCGLALSG-----------------GGVACDGGGEEGEGELVLCACGRGIHSRCLA-----AAGWEGGWDSGRWYE-----AGSMLVFPCPQC 1867
BLAST of mRNA_H-paniculata_contig5285.12664.1 vs. uniprot
Match: A0A6H5JMZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ7_9PHAE) HSP 1 Score: 734 bits (1895), Expect = 3.920e-234 Identity = 569/1433 (39.71%), Postives = 703/1433 (49.06%), Query Frame = 3
Query: 1464 GVGPPRPLPFIAYDLQTALESVQHIATQTLAGVVHAEATSGPSRRNFDHHXXXXXXXXXFSQESXXXXXXXXXXXXXXXXXXXXXXXGAAAVFAKDQASAAGLEDGWETAWPPRQLTAALTLVTARQMAHAMRCDSEPLIQIWMRCFTPLEVKHRDALWAALSPYPTDSYDRVL--GVYHRQLVCGLVTLFAQVHVSWSFLAKPSDDPAVAVGLLSLRLKTSWF-TALDVD-----NHVNSDAGIHGDNG--ETAPLSPSSGNGEDVGNEKSSGGTWGKRTSGQRGPEQWDERKTLKFIRDYGSYLDADVLACAASCREMAQALHETLRLAAQCQHYKDKEKHLHQLIRGVRTPTGT-------PLLHH--------TP-------VSTPGTRTP-----TLLSPSSPSFHSSTVSPLAISAAIDRAAAAAPTSS------TRYVATRPMEEEAVRKILGL--GPARGHHEGAGGML-GRGHR-----DGVEGMGTAASEGAGDKRGDAKDSGSEEHPPGSAPLCLLLKNLGELFRWDAASAAEMCADAFPGVRPWNVHHALY--EDSPWGKVESATSFPA--------ATPSSASVSGRYSVGD-DVSTRYDTAFHTYLWATISKQPAICRRDWKMVQRCLQLSLRIGSKLRSLPSSHPLHVFCLAATRNFG----GDSCSTGRDNNVASP---LMMDSRPGWNNRTFGNRLAQSWQSIHREEGGAG----AWEARNGGIGDGS---GSACRRYSDIVEEVALMWCQDPNGVSLDPLWLLQKLRVHKNWSIAFHICAALTRSWEEAREDLYDIGDGESLNVSSPHRHSHTEGTHTYGAGLASALTVFDTLAEACFVSFEDGNTVVLSSALGAIWAADGAMRRASSAGDPDKAGRNVGG---DKEQLSLWFHGQGNVSRSGTMGEEARRAQAGAYSPRARENDLGQYQGGGGGISAIPRSREIGLGVESGGQASGRTRSEYKGDCDASPSKRDGHDRTGAGIGEPSAGPGGGELNAGSWTRDSRTVDVIWSLMQRCRDYAPRGEEGDGGVRHGGMERGGNR----------GRGVSMGSESAA------------RDWTAAAALLLVDLAEALADGVGPQAAGDVLAACPCLLEAMPPKFFQGLADRQAALYREQALEATLLQQTMTGVWALGGVSKPGVATAAVAALADNDQKKFETRGGAGSDGRNGASPLGPRLAWLACEELTSFFQQNDNT---------LPGRGGLGGRS--------QFVTRLESTTDHAGI---TARRPWQWSAGVEEVLRHGISRS-----------------GLNLLLPGRTHRGTTLIPTSPCAFCGLVLAGTASLSRESSGKGRGTATNDVASSNTGEDLDAAIL-TCGHGFHVRCMEERVARLTERDGTWPWQEMVGGGAHMSIHMPCAEC 5345
GV PPRPLP AYDLQTALESVQH ATQTLAGVV A A G + D+ G+ A A+D AAGL +GWE AWPPR+LTAAL LVTARQMAHAMRCD+EPLIQIWMRCFTP++ KHR LW L+P P+ + D L G +HRQLVCGL+TL+AQVH+SW FLA+P DDP AVGL SLRL+T+WF T DV + G+ E +P+ S G VG+ +GG +G RGP QWDE K + FI+DYG+YL+AD +A AASCREM AL E LRLA QC+ YK KE+ LHQL+RG RTP+ T P + H TP +ST GTRTP T++SPS F S + A+SAA + +++ PMEE+AVRK LGL PA + AG ++ HR + +G+G + E G R + + PG APLCLLL NLGELFRWD A+AAEMCADAFPGVRPWNVHHAL+ +D PW E T A P+ A V+ GD D TR D AFH YLWA + K P CR DWK++QRCLQLSLR+ +KLRSLPS HPLH FC ATRN D +T R+ V P D R ++N ++ W++ GG+G + R G G GSA RRYSD+VEEV WC+ + LDPLWLL KLR HKNW +AF IC A+T SWEE E+ + + G + + E H YG+ L S L VFDTLA+ACF +F DG+T L++ALGA WAADGA+RR S P + GG ++Q G + SG Q GAYS ++ GGG E+G +G Q S + AG+G + W +SR VDV+ L +RC P G + GG + G + G G SM SE AEA+ D VGP+A GDVLAACP LLE +PPK AAL +++ALEA LL Q +WA G +++ G G + ASPLGPRLAWLACEELTSFFQ N N+ L G G G S Q R + AG+ R + G ++ L + R LNL+LPG HRG P SPC FCGL L+G A VA GE +L CG G H RC+ A G W A + +PC +C
Sbjct: 37 GVDPPRPLPAAAYDLQTALESVQHFATQTLAGVVQAAAVRGSDLYDNDY------------------DSLSGARSPRHLAGGGRAGKGSGAKEARDGGVAAGLVEGWEAAWPPRELTAALGLVTARQMAHAMRCDAEPLIQIWMRCFTPVDAKHRTKLWGGLAPAPSVN-DPFLEAGRWHRQLVCGLLTLYAQVHMSWPFLARPKDDPD-AVGLRSLRLETTWFGTQEDVGAGGXXXXXXXGIAVPGNAAAEEESPIGAGSPAGS-VGDWDEAGGG-----AGGRGPLQWDEEKAVGFIQDYGAYLEADAVAAAASCREMEWALDEVLRLAEQCEDYKSKERVLHQLLRGPRTPSVTTVSGRSSPRVWHQRAGMLGTTPARSPANSISTTGTRTPGNWTPTIMSPSRAGFPSYQLPIEAMSAAGGAGGSGWKDGDGFGGTLDAALSSGPMEEDAVRKALGLLVPPA----DPAGNVVEDENHRRHANEEHGQGVGFSGHEAGGSGRLLGQTT---SQAPGGAPLCLLLNNLGELFRWDVAAAAEMCADAFPGVRPWNVHHALHRDQDKPWTTSEPVTPVEGGSARYQTHAPPAGAGVAR----GDGDGGTRTDAAFHAYLWAVLRKHPGECRGDWKVIQRCLQLSLRLSTKLRSLPSDHPLHNFCKVATRNLKRRQRADDPAT-REAGVRHPEGGFSTDGRGQFHN-------SRRWRAGGGSGGGSGMRTPTGDLRLGVEDSGETDDGSAWRRYSDVVEEVVSQWCKHGDAFGLDPLWLLPKLRAHKNWPVAFRICGAITCSWEEQEEEGHQMNTGVISHCYATAAADGLEEGHDYGS-LGSTLPVFDTLADACFATFNDGDTETLAAALGATWAADGALRRVSLRARPPSLRGDDGGRLSPRQQAVASSLSGGKIQASG---------QTGAYS------NVTAAAGGG---------PELGHQSLTGMQGS-----------------------SSAGVGASAEXXXXXXXXXXGWVEESRMVDVVRGLARRCSGQ-PVGADDAGGSNNDGGDADGRGDANLGCSSTGGVDASMTSEDPEGGSXXXXXXXXXXXXXXXXXXXXXXXAEAVLDAVGPEATGDVLAACPHLLEGIPPK---------AALSQQRALEAALLHQATAAIWASRG------------------RRRTTATGAGNKGGSSDASPLGPRLAWLACEELTSFFQDNANSASASPNARLLGGEPGSAGPSCAESPPGLQHHHRATTDVFAAGVGGDNLSRVFSGFGGNDDGLFRSLRRKEPGSVSQGLVATMGVNLDLNLVLPGNAHRGAAFNPASPCGFCGLALSGGA-----------------VACDGGGEGEGKLVLCACGRGIHSRCL----AAAGWDSGRWY-------EAGSMLVLPCPQC 1320 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5285.12664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5285.12664.1 >prot_H-paniculata_contig5285.12664.1 ID=prot_H-paniculata_contig5285.12664.1|Name=mRNA_H-paniculata_contig5285.12664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1741bp MRRPTFAAGGDNDGKSLSIMDGSSRMKRARSGDHTSLGQGNSTRTKTQEKback to top mRNA from alignment at H-paniculata_contig5285:1242..12346- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5285.12664.1 ID=mRNA_H-paniculata_contig5285.12664.1|Name=mRNA_H-paniculata_contig5285.12664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11105bp|location=Sequence derived from alignment at H-paniculata_contig5285:1242..12346- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5285:1242..12346- >mRNA_H-paniculata_contig5285.12664.1 ID=mRNA_H-paniculata_contig5285.12664.1|Name=mRNA_H-paniculata_contig5285.12664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=10446bp|location=Sequence derived from alignment at H-paniculata_contig5285:1242..12346- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |