mRNA_H-paniculata_contig52629.12640.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52629.12640.1
Unique NamemRNA_H-paniculata_contig52629.12640.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52629.12640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52629contigH-paniculata_contig52629:524..1073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size552
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930527.780948-CDS-H-paniculata_contig52629:523..9461622930527.780948-CDS-H-paniculata_contig52629:523..946Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52629 524..946 +
1691481333.0737479-CDS-H-paniculata_contig52629:523..9461691481333.0737479-CDS-H-paniculata_contig52629:523..946Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52629 524..946 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930527.795645-UTR-H-paniculata_contig52629:946..10731622930527.795645-UTR-H-paniculata_contig52629:946..1073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52629 947..1073 +
1691481333.0848043-UTR-H-paniculata_contig52629:946..10731691481333.0848043-UTR-H-paniculata_contig52629:946..1073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52629 947..1073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52629.12640.1prot_H-paniculata_contig52629.12640.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52629 524..946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52629.12640.1

>prot_H-paniculata_contig52629.12640.1 ID=prot_H-paniculata_contig52629.12640.1|Name=mRNA_H-paniculata_contig52629.12640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
RRSVNGVRGCPGPGSSGRDVGGYLRQTSPPARAAGRGTGAGCHYEWGRGQ
GTGRGRGSELLRLALHGVRCACCSTEVVRGVWAMGLHALTPYIPCARLTY
WNAPQRRVRFAARTQGAGRGTTVNRCWSISCRKTQAAVRG*
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mRNA from alignment at H-paniculata_contig52629:524..1073+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52629.12640.1 ID=mRNA_H-paniculata_contig52629.12640.1|Name=mRNA_H-paniculata_contig52629.12640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=550bp|location=Sequence derived from alignment at H-paniculata_contig52629:524..1073+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGGAGCGTTAATGGCGTCCGAGGTTGCCCAGGACCTGGTTCCTCGGG
GAGGGACGTCGGAGGATACCTTCGACAGACCTCGCCGCCGGCGCGGGCAG
CTGGACGGGGGACAGGGGCAGGATGCCACTACGAATGGGGACGAGGACAA
GGTACTGGACGCGGACGTGGTAGCGAGCTCCTGAGGCTGGCCTTGCATGG
AGTTCGCTGCGCATGTTGTTCGACGGAGGTGGTGCGCGGGGTATGGGCTA
TGGGACTGCATGCACTCACGCCCTATATACCGTGTGCGCGCTTAACATAC
TGGAACGCTCCCCAGCGCCGGGTCCGCTTTGCTGCCCGTACTCAGGGTGC
GGGGCGAGGCACGACTGTCAACCGGTGCTGGAGTATATCGTGCAGGAAGA
CCCAAGCAGCCGTGAGAGGGTAGAGGCTCTCGGCGGGGTGCGCCCCGGCG
AAAGCTCCGCAGCCAGGCGGCGATGCTTCTTCGCCTGGGACCAAAATAGC
CTGGGTATGGCGGGACCTCTGGATCGCTACACGGTCGTCGACTTTAAACA
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Coding sequence (CDS) from alignment at H-paniculata_contig52629:524..1073+

>mRNA_H-paniculata_contig52629.12640.1 ID=mRNA_H-paniculata_contig52629.12640.1|Name=mRNA_H-paniculata_contig52629.12640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig52629:524..1073+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGGAGCGTTAATGGCGTCCGAGGTTGCCCAGGACCTGGTTCCTCGGG
GAGGGACGTCGGAGGATACCTTCGACAGACCTCGCCGCCGGCGCGGGCAG
CTGGACGGGGGACAGGGGCAGGATGCCACTACGAATGGGGACGAGGACAA
GGTACTGGACGCGGACGTGGTAGCGAGCTCCTGAGGCTGGCCTTGCATGG
AGTTCGCTGCGCATGTTGTTCGACGGAGGTGGTGCGCGGGGTATGGGCTA
TGGGACTGCATGCACTCACGCCCTATATACCGTGTGCGCGCTTAACATAC
TGGAACGCTCCCCAGCGCCGGGTCCGCTTTGCTGCCCGTACTCAGGGTGC
GGGGCGAGGCACGACTGTCAACCGGTGCTGGAGTATATCGTGCAGGAAGA
CCCAAGCAGCCGTGAGAGGGTAGCGGCGGAGCGTTAATGGCGTCCGAGGT
TGCCCAGGACCTGGTTCCTCGGGGAGGGACGTCGGAGGATACCTTCGACA
GACCTCGCCGCCGGCGCGGGCAGCTGGACGGGGGACAGGGGCAGGATGCC
ACTACGAATGGGGACGAGGACAAGGTACTGGACGCGGACGTGGTAGCGAG
CTCCTGAGGCTGGCCTTGCATGGAGTTCGCTGCGCATGTTGTTCGACGGA
GGTGGTGCGCGGGGTATGGGCTATGGGACTGCATGCACTCACGCCCTATA
TACCGTGTGCGCGCTTAACATACTGGAACGCTCCCCAGCGCCGGGTCCGC
TTTGCTGCCCGTACTCAGGGTGCGGGGCGAGGCACGACTGTCAACCGGTG
CTGGAGTATATCGTGCAGGAAGACCCAAGCAGCCGTGAGAGGGTAG
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