mRNA_H-paniculata_contig52409.12611.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52409.12611.1
Unique NamemRNA_H-paniculata_contig52409.12611.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig52409.12611.1 vs. uniprot
Match: D8LLK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK2_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 3.270e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 SFCAVGSQVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMCIRFFPQV 165
            SF    +QVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRT++CIRFFPQV
Sbjct:  512 SFTLRETQVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTAVCIRFFPQV 566
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BLAST of mRNA_H-paniculata_contig52409.12611.1 vs. uniprot
Match: A0A6H5K094_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K094_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.940e-19
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:   13 VGSQVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMCIRFFPQV 165
            V   VGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRT++CIRFFPQV
Sbjct:  562 VPIMVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTAVCIRFFPQV 612
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BLAST of mRNA_H-paniculata_contig52409.12611.1 vs. uniprot
Match: A0A7S2F3B4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F3B4_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.430e-17
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:   13 VGSQVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMCIRFFPQV 165
            V   VGILFFLFEFFSDQLLAFMVLS+VW+CEVYSV+SVRT + IRFFP++
Sbjct:   22 VPIMVGILFFLFEFFSDQLLAFMVLSLVWICEVYSVISVRTMLSIRFFPRI 72
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BLAST of mRNA_H-paniculata_contig52409.12611.1 vs. uniprot
Match: A0A835Z245_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z245_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.470e-17
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:   13 VGSQVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMCIRFFPQV 165
            V   VGILFFLFEFFSDQLLAFMVLSVVW+CEVYSV+SVRTS  IRFFP+V
Sbjct:  248 VPIMVGILFFLFEFFSDQLLAFMVLSVVWMCEVYSVISVRTSTSIRFFPRV 298
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BLAST of mRNA_H-paniculata_contig52409.12611.1 vs. uniprot
Match: A0A7S1U341_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U341_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.580e-16
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:   13 VGSQVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMCIRFFPQV 165
            V   VGILFFLFEFFSDQLLAF+VLSVVWLCEVYSVV+VRTS+  RFFP++
Sbjct:  338 VPIMVGILFFLFEFFSDQLLAFLVLSVVWLCEVYSVVAVRTSLSTRFFPRI 388
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BLAST of mRNA_H-paniculata_contig52409.12611.1 vs. uniprot
Match: A0A7S2SU34_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU34_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.370e-15
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:   13 VGSQVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMCIRFFPQ 162
            V   VGILFFLFEFFSDQLLAFMVLSVVW+CEVYSV+SVRT+  I+ FP+
Sbjct:  172 VPLMVGILFFLFEFFSDQLLAFMVLSVVWICEVYSVISVRTTESIQLFPR 221
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BLAST of mRNA_H-paniculata_contig52409.12611.1 vs. uniprot
Match: A0A425DGZ8_9STRA (DUF4110 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DGZ8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.600e-13
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    4 FCAVGSQVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMCIRFFPQVRVS 174
            F A  + VG+LFFLFEFF D+LLAFMV+SVVWLCE+YSV+ VRT + + FFP V +S
Sbjct:  126 FHATTATVGMLFFLFEFFKDRLLAFMVMSVVWLCELYSVICVRTWLSLTFFPPVFLS 182
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BLAST of mRNA_H-paniculata_contig52409.12611.1 vs. uniprot
Match: A0A024U8M7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U8M7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 8.360e-13
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:   13 VGSQVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMCIRFFPQVRVS 174
            V   VG+LFFLFEFF D+LLAFM++SVVWLCE+YSV+ VRT + + FFP V +S
Sbjct:  274 VPIMVGMLFFLFEFFKDRLLAFMIMSVVWLCELYSVICVRTCLSLTFFPPVFLS 327
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BLAST of mRNA_H-paniculata_contig52409.12611.1 vs. uniprot
Match: A0A7C9D994_OPUST (Uncharacterized protein (Fragment) n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9D994_OPUST)

HSP 1 Score: 67.8 bits (164), Expect = 1.060e-12
Identity = 31/50 (62.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   13 VGSQVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMCIRFFPQ 162
            V   +GILFFLFEF+ DQLLAFMVL +VWLCE+++++SVRT + ++FFP+
Sbjct:   32 VPIMIGILFFLFEFYDDQLLAFMVLILVWLCEIFTLISVRTPISMKFFPR 81
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BLAST of mRNA_H-paniculata_contig52409.12611.1 vs. uniprot
Match: W4GVL1_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GVL1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.190e-12
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:   13 VGSQVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMCIRFFPQVRVS 174
            V   VG+LFFLFEFF D+LLAFMV+SVVWLCE+YSV+ VRT + + FFP V +S
Sbjct:  286 VPIMVGMLFFLFEFFKDRLLAFMVMSVVWLCELYSVICVRTWLSLTFFPPVFLS 339
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52409.12611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLK2_ECTSI3.270e-2087.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K094_9PHAE3.940e-1990.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2F3B4_9STRA2.430e-1778.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835Z245_9STRA3.470e-1784.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1U341_9STRA3.580e-1680.39Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2SU34_9STRA8.370e-1578.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A425DGZ8_9STRA3.600e-1364.91DUF4110 domain-containing protein n=1 Tax=Aphanomy... [more]
A0A024U8M7_9STRA8.360e-1364.81Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A7C9D994_OPUST1.060e-1262.00Uncharacterized protein (Fragment) n=2 Tax=Opuntia... [more]
W4GVL1_9STRA1.190e-1266.67Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52409contigH-paniculata_contig52409:214..387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue9.5e-17
Seed eggNOG ortholog2880.D8LLK2
Preferred nameTMEM259
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0008150,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0010941,GO:0012505,GO:0019222,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032268,GO:0032270,GO:0033554,GO:0034976,GO:0042176,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060548,GO:0061136,GO:0065007,GO:0080090,GO:0080134,GO:0080135,GO:1901214,GO:1901215,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1905897,GO:1905898
EggNOG free text desc.positive regulation of ERAD pathway
EggNOG OGsKOG2092@1,KOG2092@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930523.339286-CDS-H-paniculata_contig52409:213..3871622930523.339286-CDS-H-paniculata_contig52409:213..387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52409 214..387 -
1691481330.8265808-CDS-H-paniculata_contig52409:213..3871691481330.8265808-CDS-H-paniculata_contig52409:213..387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52409 214..387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52409.12611.1prot_H-paniculata_contig52409.12611.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52409 214..387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52409.12611.1

>prot_H-paniculata_contig52409.12611.1 ID=prot_H-paniculata_contig52409.12611.1|Name=mRNA_H-paniculata_contig52409.12611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
SFCAVGSQVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMCIR
FFPQVRVS
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mRNA from alignment at H-paniculata_contig52409:214..387-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52409.12611.1 ID=mRNA_H-paniculata_contig52409.12611.1|Name=mRNA_H-paniculata_contig52409.12611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig52409:214..387- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGTTTTGTGCTGTCGGTTCGCAGGTGGGCATCTTGTTTTTCCTGTTTGA
GTTCTTCTCTGACCAGCTGCTAGCCTTCATGGTACTCTCCGTGGTGTGGC
TGTGCGAAGTCTACTCCGTCGTGAGCGTGAGAACTTCGATGTGTATACGT
TTCTTTCCCCAGGTGAGGGTGTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig52409:214..387-

>mRNA_H-paniculata_contig52409.12611.1 ID=mRNA_H-paniculata_contig52409.12611.1|Name=mRNA_H-paniculata_contig52409.12611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig52409:214..387- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGTTTTGTGCTGTCGGTTCGCAGGTGGGCATCTTGTTTTTCCTGTTTGA
GTTCTTCTCTGACCAGCTGCTAGCCTTCATGGTACTCTCCGTGGTGTGGC
TGTGCGAAGTCTACTCCGTCGTGAGCGTGAGAACTTCGATGTGTATACGT
TTCTTTCCCCAGGTGAGGGTGTCTTCGTTTTGTGCTGTCGGTTCGCAGGT
GGGCATCTTGTTTTTCCTGTTTGAGTTCTTCTCTGACCAGCTGCTAGCCT
TCATGGTACTCTCCGTGGTGTGGCTGTGCGAAGTCTACTCCGTCGTGAGC
GTGAGAACTTCGATGTGTATACGTTTCTTTCCCCAGGTGAGGGTGTCT
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