mRNA_H-paniculata_contig524.12608.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig524.12608.1 vs. uniprot
Match: D8LDT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT6_ECTSI) HSP 1 Score: 627 bits (1618), Expect = 9.260e-210 Identity = 347/568 (61.09%), Postives = 395/568 (69.54%), Query Frame = 1
Query: 1 ARSLREMNKAAMTIQLWYRRRHGVYYTTLRIVARYQLAFKRAAAAEKEYLRKREEAVHVIQLAWRNRAMRGYLRARFEARRARLFREKEAAARVGAALVLQGWWHRLQARMSLKSRFAKRARIAMKKMEDDQRAQEEDQASRIMQRAWLRHVEWEKMRLRFTLRRKALDEKHALKESARLELECLAISKKEEARRLKAGHEATKVKLLMEETAKKRKEEEAASYLLKAWKLGYNPDTQTNYWFNHITGESTTTRPEGWKIEPSERWLKQMNDKGLRFYLDQETGESHWFPPCEQCYKREGDRVCQGCDGQIYCLRCWTMEHKSDDMATHKWNGADSGEGKINGTRAPTATADLAPGERHCVDCGYRKAKWACLQCKDALCQECSARIHGSGHRKNHQLEIFAQSKKGWQTVEGRTDNEPTFYFNATTNDSTFDKPQELMLPEELVEHKRFLEYKEVSEKYVKKIEKLQFQLEELMYEKDKIAHQWANAEKDMKAKGVHTLTGAAGLSLGGLKIGGXXXXXXXXXXXHEAGSPRTPVQEEAYKKGLLISRKDKKNMGFEVKLKKTAVLD 1704
ARSLREMN A IQLWYRRR GVYYTTLRIVARYQLA+KR A +EYLR+REEA +QLAWR R+MR YL RFE RRAR+ K+AA AKRAR+ +KK E+++RA+ ED LDE AL+ES RLELE L K+EE +RL+ HEATKVKLL+EET KKRK +EAA YLLKAWKLGY+ D NYWFNH+TGES+ RPEGW I PSERW KQ NDKGL +YLD ETG++HWFPPCEQCYKREG++VC C+ Q+YC RCWTM HK + MA H W GADSG+ DL+PGERHCVDCG+RKAKW CLQCKDALC EC+ARIHGSGHRKNHQ+E +A+SKKGWQTVEGRTDNEPT+YFNA+T +STFDKPQ+LMLPEELVEH RFL+YKE SEKYV+KI IA+QWANA+KDMKA H G GLSL GLK GG XXXXXX + PRT QEE YKK LL+SRKDKK+MGFEVKLKK VLD
Sbjct: 705 ARSLREMNAAVSKIQLWYRRRQGVYYTTLRIVARYQLAYKRDVLAREEYLRRREEAAVAVQLAWRRRSMRVYLSRRFEGRRARIALAKKAAEXXXXXXXXXXXXXXXXXXXXXXXXXAKRARLMVKKAEEEERARLEDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDETFALEESKRLELEQLEHEKREEEKRLQREHEATKVKLLLEETEKKRKADEAADYLLKAWKLGYDQDNARNYWFNHVTGESSLERPEGWVILPSERWKKQTNDKGLAYYLDLETGKTHWFPPCEQCYKREGEKVCMDCEEQVYCGRCWTMAHKEEHMAGHVWKGADSGK------------EDLSPGERHCVDCGFRKAKWVCLQCKDALCGECNARIHGSGHRKNHQVETYAKSKKGWQTVEGRTDNEPTYYFNASTGESTFDKPQDLMLPEELVEHLRFLKYKETSEKYVQKIXXXXXXXXXXXXXXXXIAYQWANAQKDMKAD--HGTGG--GLSLSGLKFGGSDKKSXXXXXXXD---PRTREQEEGYKKSLLLSRKDKKDMGFEVKLKKETVLD 1253
BLAST of mRNA_H-paniculata_contig524.12608.1 vs. uniprot
Match: A0A6H5KED0_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED0_9PHAE) HSP 1 Score: 249 bits (636), Expect = 1.400e-75 Identity = 161/323 (49.85%), Postives = 186/323 (57.59%), Query Frame = 1
Query: 736 ITGESTTTRPEGWKIEPSERWLKQMNDKGLRFYLDQETGESHWFPPCEQCYKREGDRVCQGCDGQIYCLRCWTMEHKSDDMATHKWNGADSGEGKINGTRAPTATADLAPGERHCVDCGYRKAKWACLQCKDALCQECSARIHGSGHRKNHQLEIFAQSKKGWQTVEGRTDNEPTFYFNATTNDSTFDKPQELMLPEELVEHKRFLEYKEVSEKYVKKIEKLQFQLEELMYEKDKIAHQWANAEKDMKAKGVHTLTGAAGLSLGGLKIGGXXXXXXXXXXXHEAGSPRTPVQEEAYKKGLLISRKDKKNMGFEVKLKKTAVLD 1704
+T ES+ RPEGW I PSERW KQ NDKGL +YLD ETGE+HWFPPCEQCYKREG+++C C+ Q+YC RCWTM HK +DMA H W GADSG+ + C ++ E G + + +K GRTDNEPT+YFNA+T +STFDKPQ+LMLPEELVEH RFL+YKE SEK K + H DMKA H G GLSL GLK GGXXXXXXXXXXX QEE YKK LL+SRKDKK+MGFEVKLKK VLD
Sbjct: 1 MTRESSLERPEGWIILPSERWRKQTNDKGLAYYLDLETGETHWFPPCEQCYKREGEKICMDCEEQVYCGRCWTMAHKEEDMAGHVWKGADSGK----------------------------------MPCAASVTLE----FTGVDTARTTKSRRTPSPRKA-----GRTDNEPTYYFNASTGESTFDKPQDLMLPEELVEHLRFLKYKETSEK------------------KPHVMH------ADMKAD--HGTGG--GLSLSGLKFGGXXXXXXXXXXXXXXXXXE---QEEGYKKSLLLSRKDKKDMGFEVKLKKETVLD 249
BLAST of mRNA_H-paniculata_contig524.12608.1 vs. uniprot
Match: A0A8J2SF21_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SF21_9STRA) HSP 1 Score: 212 bits (540), Expect = 2.870e-55 Identity = 150/473 (31.71%), Postives = 229/473 (48.41%), Query Frame = 1
Query: 73 YYTTLRIVARYQLAFKRAAAAEKEYLRKREEAVHVIQLAWRNRAMRGYLRARFEARRARLFREKEAAARVGAALVLQGWWHRLQARMSLKSRFAKRARIAMKKMEDDQRAQ---EEDQASRIMQRAWLRHVEWEKMRLRFTLRRKALDEKHALKESARLELECLAISKKEEARRLKAGHEATKVKLLMEETAKKRKEEEAASYLLKAWKLGYNPDTQTNYWFNHITGESTTTRPEGWKIEPSERWLKQMNDKGLRFYLDQETGESHWFPPCEQCYKREGDRVCQGC-----DGQIYCLRCWTMEHKSDDMATHKWNGADSGEGKINGTRAPTATADLAPGERHCVDCGYRKAKWACLQCKDALCQECSARIHGSGHRKNHQLEIFAQSKKGWQTVEGRTDNEPTFYFNATTNDSTFDKPQELMLPEELVEHKRFLEYKEVSEKYVKKIEKLQFQLEELMYEKDKIAHQWANAE 1467
Y LRI+AR ++ AE +R++A V + A R YL RF+A+R RL E+ R+ +A +Q W ++ R A+RAR+ + D +R + +ED A +I QR ++ + LRF + LD +++E+ RR L +WK+G + + TNY++N +TGES+ +PEGW E W+KQ + KG +Y +Q+T ES WFPPC C + E +VC C DG YC C+ H D + H W GAD + +L GE+HC+ CG KA C C+D C +C A H G K H + ++K+GWQ + GR E T+Y+N +T ++ +DKP+E ML +EL EH FL+++ +E + KK+ +LQ ++E L YEKD + + A+
Sbjct: 933 YNQPLRIIARRRVENNERMCAEVVEQVRRDDAALVFRRAIRRWLDWKYLCRRFDAQRERLDLEETLRERLESAECIQRNW------LAYLERCAERARVLALRDRDARREELELQEDAAFQI-QRCVQCYLFNRLLELRFQAAAQRLD------------------AEREQRRRXXXXXXXXXXXXXXXXXXXXX----XXQVELSSWKMGADEEG-TNYYYNWVTGESSYEKPEGWYPPAEEVWIKQTDAKGNVYYFNQDTLESAWFPPCMVCMRLEAKKVCFSCPDAGVDGLFYCNECFEKAHDEDAVNEHNWRGADQDK------------EELKSGEKHCLVCGKAKASVVCKVCRDEYCDKCFAETHSHGQLKEHPTIPYLEAKQGWQKMVGRVAGEQTYYYNVSTGETRYDKPEEFMLEDELREHHNFLKFQLAAETHAKKVGELQVEVERLQYEKDTTMYNLSKAK 1363
BLAST of mRNA_H-paniculata_contig524.12608.1 vs. uniprot
Match: A0A835Z6W4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6W4_9STRA) HSP 1 Score: 185 bits (469), Expect = 4.580e-46 Identity = 152/518 (29.34%), Postives = 231/518 (44.59%), Query Frame = 1
Query: 244 ARLFREKEAAARVGA----ALVLQGWWHRLQARMSLKSRFAKRARIAMKKMEDDQRAQEEDQASRIMQRAWLRHVEWEKMRLRFTLRRKALDEKHALKESARLELECLAISKKEEARRLKAG-------HEATKVKL----LMEETAKKRKEEEAASYLLKAWKLGYNPDTQTNYWFNHITGESTTTRPEGWKIEPSERWLKQMNDKGLRFYLDQETGESHWFPPCEQCYKREGDRVCQGCDGQIYCLRCWTMEHKSDDMATHKWNGADSGEGKINGTRAPTATADLAPGERHCVDCGYRKAKWACLQCK-DALCQECSARIHGSGHRKNHQLEIFAQSKKGWQT---------------------VEGRTDNEPTFYFNATTNDSTFDKPQELMLPEELVEHKRFLEYKEVSEKYVKKIEKLQFQLEELMYEKDKIAHQWANAEKDMKAKGVHTLTGAAGLSLGGLKIGGXXXXXXXXXXXHEAGSPRTPVQEEAYKKGLLISRKDKKNMGFEVKLK 1686
AR RE+ AAA V A AL LQ WW + A R A+R R + + + + + A RF K A+ + LA + + EARRL+ H K +L ++E +A KR EEE + +L AWK+ ++ T++N + N+ITGE+ T P GW++ P++RW+ Q +++G + +LD TG+ WFPP C C C+ H + H + PTA + GE CV C YR A C C DALC CS +H +G R+ H L A+ ++GWQ VE RTD+E T+YFNATT +S +KP+ LML EL E ++ LE +E + K++ + E+LQ LE+++ E+D + + +KD++ A LG ++ + Y+K LL+SR ++++G VKLK
Sbjct: 859 ARRERERAAAAHVNAQHAAALKLQRWWRQSAALW----RLARRVRRGQARRDREALWRRREGAXXXXXXXXXXXXXXXXXXARF-------------KAQAKKQGRALAAAHEAEARRLRDSAALDRQRHSEEKARLEAHLMLETSALKRTEEEKRAQMLAAWKVSFDKATKSNVYKNYITGETATAGPPGWQVNPADRWVVQEDEQGFKRHLDNVTGDLCWFPPEPGCKTLRAP----------LCDACFARAHPPPTLRHHAF------------AAPPTAKEPVPRGEAACVACLYRVATVFCRVCGGDALCARCSGALHRTGRRRAHALVACAEQRRGWQQRRGWEVGAPRDACGTYVLWQMVEARTDSEKTYYFNATTGESASEKPESLMLGGELDERRKCLEAREAASKHLTRAERLQQLLEQVVLERDNMQIELQQLKKDLETATADLEAARANAMLGTVE-----------------------TDKLTYRKELLLSRTQRRDLGQSVKLK 1314
BLAST of mRNA_H-paniculata_contig524.12608.1 vs. uniprot
Match: A0A6H5KDD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD4_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 2.550e-8 Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 1
Query: 1 ARSLREMNKAAMTIQLWYRRRHGVYYTTLRIVARYQLAFK 120
ARSLREMN A IQLWYRRR GVYYTTLRIVARYQLA+K
Sbjct: 1066 ARSLREMNAAVSKIQLWYRRRQGVYYTTLRIVARYQLAYK 1105 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig524.12608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig524.12608.1 >prot_H-paniculata_contig524.12608.1 ID=prot_H-paniculata_contig524.12608.1|Name=mRNA_H-paniculata_contig524.12608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=564bp MNKAAMTIQLWYRRRHGVYYTTLRIVARYQLAFKRAAAAEKEYLRKREEAback to top mRNA from alignment at H-paniculata_contig524:17746..34929+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig524.12608.1 ID=mRNA_H-paniculata_contig524.12608.1|Name=mRNA_H-paniculata_contig524.12608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=17184bp|location=Sequence derived from alignment at H-paniculata_contig524:17746..34929+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig524:17746..34929+ >mRNA_H-paniculata_contig524.12608.1 ID=mRNA_H-paniculata_contig524.12608.1|Name=mRNA_H-paniculata_contig524.12608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3384bp|location=Sequence derived from alignment at H-paniculata_contig524:17746..34929+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |