mRNA_H-paniculata_contig524.12607.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig524.12607.1 vs. uniprot
Match: D8LDT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT6_ECTSI) HSP 1 Score: 556 bits (1434), Expect = 1.430e-181 Identity = 335/632 (53.01%), Postives = 432/632 (68.35%), Query Frame = 1
Query: 1 AGVPCATRMRRLEAAMEAALERPVTYEEQARQERLAHLRMTYTMEKEMGELPVEFLRGVDCEDFGINLRLARMCALLTNSHRRTERTAFSIWEKALEEQLAGKFAEDMLRYEHTRLFATLSAAKQRWETKIVRRRFGLWRRSARLTRTAENEVVAKDAASAIQRWTRIQFAIRRRKTAIRRRERRLAAEAHERSEAVLGVLAFEDERRHVAAWLSTLWRTLRLMEAKKRYDGRHQCATELQNAWLG----CYILEVAEVERQELRKYRLAEQEKRWKIIHPFAQNFLSSTLDQSARAALAKTHACHQQLQLIYEEKMAEYIRILTSAHAKVTPIWRGKVARLRYSAMSKALVEIQRAWRRACQRRAFCREIDDRVQATREEVAAQRVAAAIRLQRFVIKQGDRHRLSVRFKARKGRLDFERRNRTELASAILVLQQPFTTVRDYSEQEDFESMGEAVRPAVAVARIRALAASRGVSLEDLTASATAAVAKGRGSEGQYDGELDE-----RLGG-ELARAVLEQERTQGRAAARLQNVWRRKIASRIMNERFRLKKIQLEGERRERSACSIQRAWTSLCLRAEIATRVLLRRERIWAQRDAATRRLQKLCRRRKDAKELKRRFVVRKIILEQA 1866
A A RM +LEA M AA+E PVTYEEQ R+ERLAHLR+ YT+E++M ELPV+FLRGV ED+GI RL+RMCA L SHR ++ A S W +ALE+ A +FAEDMLRYEH RLFATLS+ ++RWE K RRRF WR+ RL R AE+E A+ A IQRW R + A RR + +RERR A A ++++AV GVL+FED RR TLWRTLRL++ K+RY+ H+ AT LQ+AWL C +LE AE+ERQEL + RLAEQ +RW +I P A+ FLS+ LD+S RA +AK A H+ L+L +E ++AE+ R+L +AHA + WRGK +RL + A KALV++QRAW+RA RR EIDDRV AT + + R +AA RLQ F K RH+LS RF ARK +LDFERRNR+ELASA LV+ +P +R+ + +EDFE+MG+AVRPA VAR+RA AA+RGVSL + + A +G ++G + E RL G ELARAVL+Q+ +Q RAA +Q+ WR++ A + F +K+Q+ +RRE SA +QR W S LR E+A RV R RI A+RD R LQ+LCRRRKDAKEL RF +RKIILEQA
Sbjct: 84 AAAKAAERMTKLEALMNAAMESPVTYEEQVRRERLAHLRVMYTVERDMAELPVDFLRGVGYEDYGIKPRLSRMCAALGKSHRWSKTVALSRWARALEKARADEFAEDMLRYEHARLFATLSSIRKRWELKQARRRFLGWRKRVRLARLAEDEHRARVGAIKIQRWARRRLAARRXXXXLEQRERRRNALARDKADAVAGVLSFEDNRRE------TLWRTLRLVDEKRRYEANHRAATALQDAWLRHVGRCQLLEYAEMERQELHRRRLAEQARRWVVILPMARGFLSACLDRSQRAVIAKLRARHETLRLAHEAELAEHRRVLNAAHAVIAHAWRGKSSRLEFLARMKALVDVQRAWKRAAGRRRLQAEIDDRVVATAQRIKKARESAASRLQAFARKSAQRHQLSKRFAARKAKLDFERRNRSELASACLVMFKPSRAIREAAGREDFEAMGDAVRPAEVVARLRASAAARGVSLSQIMSGAF----DDDDDDGDHEGGVGEDGAPKRLSGSELARAVLKQQESQRRAAEAVQHAWRKRKAMLHLEGLFAKRKVQILNDRRELSAFRLQRVWASARLRVELAARVEATRRRIAAERDWGARMLQRLCRRRKDAKELASRFAIRKIILEQA 705
BLAST of mRNA_H-paniculata_contig524.12607.1 vs. uniprot
Match: A0A6H5KDD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD4_9PHAE) HSP 1 Score: 498 bits (1282), Expect = 2.220e-160 Identity = 313/642 (48.75%), Postives = 405/642 (63.08%), Query Frame = 1
Query: 1 AGVPCATRMRRLEAAMEAALERPVTYEEQARQERLAHLRMTYT-------------------MEKEMGELPVEFLRGVDCEDFGINLRLARMCALLTNSHRRTERTAFSIWEKALEEQLAGKFAEDMLRYEHTRLFATLSAAKQRWETKIVRRRFGLWRRSARLTRTAENEVVAKDAASAIQRWTRIQFAIRRRKTAIRRRERRLAAEAHERSEAVLGVLAFEDERRHVAAWLSTLWRTLRLMEAKKRYDGRHQCATELQNAWLGCYILEVAEVERQELRKYRLAEQEKRWKIIHPFAQNFLSSTLDQSARAALAKTHACHQQLQLIYEEKMAEYIRILTSAHAKVTPIWRGKVARLRYSAMSKALVEIQRAWRRACQRRAFCREIDDRVQATREEVAAQRVAAAIRLQRFVIKQGDRHRLSVRFKARKGRLDFERRNRTELASAILVLQQPFTTVRDYSEQEDFESMGEAVRPAVAVARIRALAASRGVSLEDLTASATAAVAKGRGSEGQYDGELDERLGG-ELARAVLEQERTQGRAAARLQNVWRRKIASRIMNERFRLKKIQLEGERRERSACSIQRAWTSLCLRAEIATRVLLRRERIWAQRDAATRRLQKLCRRRKDAKELKRRFVVRKIILEQA 1866
A A RM+RLEA M AA+E PVTYEEQ R+ERLAHLR+ YT +EKEM ELPV+FLRGV ED+GI RL+RMCA L SHR ++ A S W +ALE+ A +FAE+MLRYEH RLFA LS+ ++RWE K RRRF WR+ RL R AE++ A+ A IQRW R + A RRR A+ +RERR A A ++++A+ GVL+FED RR C +LE AE+ERQEL + RLAE +RW +I P A+ FLS+ LD+S RA +AK A H+ L+L YE ++AE+ R+L +AHA ++ WRGK RL + A KALV++QRAW+RA RR EID RV AT + + R +AA RLQ F K RH+LS RF ARK +LDFERRNR+ELASA LV+ +P +R+ + +EDFE+MG+AVRPA VAR+RA AA+RGVSL + + A G +G + + +RL G ELARAVL+Q+ +Q RAA +Q WR++ A + F +K+++ +RRE SA +QR W S LR E+A RV R RI A+R+ R LQ+LCRRRKDAKEL RF +RKIILEQA
Sbjct: 463 AAAKAAERMKRLEALMNAAMESPVTYEEQVRRERLAHLRVMYTGVDLLEGHGEKQIVSQANKVEKEMAELPVDFLRGVGYEDYGIKSRLSRMCAALGKSHRWSKAVALSRWAQALEKARADEFAEEMLRYEHARLFAMLSSIRKRWELKQARRRFLGWRKRVRLARLAEDQDQARVGAIKIQRWARRRLAARRRXXALEQRERRRIALARDKADAIAGVLSFEDNRR--------------------------------------CQLLEYAEMERQELHRRRLAEHARRWAVILPMARGFLSACLDRSQRAVIAKLRARHETLRLAYEAELAEHRRVLNAAHAVISHAWRGKRCRLEFVARMKALVDVQRAWKRAAGRRRLQAEIDARVAATAQRIKKARESAASRLQAFARKSAQRHQLSKRFAARKAKLDFERRNRSELASACLVMFEPSRAIREAAGREDFEAMGDAVRPAEVVARLRASAAARGVSLSQIMSGAFDDDDGGDXEDGVGEDGVPKRLSGSELARAVLKQQESQRRAAEAVQLAWRKRKAMLHLEGLFAKRKVKILNDRRESSALRLQRVWASARLRVELAARVEATRRRIAAEREWGARMLQRLCRRRKDAKELASRFAIRKIILEQA 1066 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig524.12607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig524.12607.1 >prot_H-paniculata_contig524.12607.1 ID=prot_H-paniculata_contig524.12607.1|Name=mRNA_H-paniculata_contig524.12607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=614bp MRRLEAAMEAALERPVTYEEQARQERLAHLRMTYTMEKEMGELPVEFLRGback to top mRNA from alignment at H-paniculata_contig524:2637..17376+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig524.12607.1 ID=mRNA_H-paniculata_contig524.12607.1|Name=mRNA_H-paniculata_contig524.12607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14740bp|location=Sequence derived from alignment at H-paniculata_contig524:2637..17376+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig524:2637..17376+ >mRNA_H-paniculata_contig524.12607.1 ID=mRNA_H-paniculata_contig524.12607.1|Name=mRNA_H-paniculata_contig524.12607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3684bp|location=Sequence derived from alignment at H-paniculata_contig524:2637..17376+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |