mRNA_H-paniculata_contig52286.12596.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52286.12596.1
Unique NamemRNA_H-paniculata_contig52286.12596.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 8.760e-16
Identity = 37/88 (42.05%), Postives = 49/88 (55.68%), Query Frame = 1
Query:    1 SCLDNRSHSHAFGHNLGCYLNRENTNVDKPYEHGYRSCDTQLPFSTIMSVK---CSSGQAP-------RINFYSNPEATWRGLPTGTA 234
            +C DN SH+H   HN+GCY +R+N+     Y HGYR C    P+ TIMS     C     P       ++N++SNPE T+   PTGTA
Sbjct:  478 NCFDNFSHTHEIAHNMGCYHDRDNSETQDEYRHGYRYCTGSDPYRTIMSYYQNGCGGDPTPEADPIVPQVNYFSNPEVTYLNKPTGTA 565          
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.280e-13
Identity = 34/88 (38.64%), Postives = 48/88 (54.55%), Query Frame = 1
Query:    1 SCLDNRSHSHAFGHNLGCYLNRENTNVDKPYEHGYRSCDTQLPFSTIMSVK---CSSGQA-------PRINFYSNPEATWRGLPTGTA 234
            +C DN SH+H   HN+GCY ++ N++    Y HG+R C+   P+ TIMS     C            PR+N++SNP  T+    TGTA
Sbjct:  298 NCFDNFSHTHEIAHNMGCYHDKNNSDTQHAYRHGWRYCEGADPYRTIMSYYHNGCGGDPTSEDDPIVPRVNYFSNPNVTYLNKSTGTA 385          
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: D8LCC0_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC0_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 7.250e-12
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 1
Query:    4 CLDNRSHSHAFGHNLGCYLNRENTNVDKPYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTGT 231
            CLDN SH H  GHN+G   NRE+T+ +  Y H  R C    P+ TIM+ +    QAPR+  +S  + T+     GT
Sbjct:  323 CLDNLSHIHEIGHNMGANHNREDTSSEHDYAHAQRYCTGDTPYRTIMAYETGCLQAPRVAMFSTQDKTYASKSLGT 398          
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: A0A7T0G2Z3_9BACT (Uncharacterized protein n=1 Tax=Candidatus Nitrohelix vancouverensis TaxID=2705534 RepID=A0A7T0G2Z3_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 3.740e-9
Identity = 31/80 (38.75%), Postives = 41/80 (51.25%), Query Frame = 1
Query:    4 CLDNRSHSHAFGHNLGCYLNRENTNVDKP---YEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTGTA 234
            C+ N + +H  GHNLG   +R N N D     + HGY   DT   F TIM  +       RI ++SNP+AT+ G   G A
Sbjct:  308 CISNHTFTHEIGHNLGARHDRANDNTDNSPFTFNHGY--IDTSNNFRTIMGTQTGCSTCTRIQYWSNPDATYNGAVLGVA 385          
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: T2G9U4_MEGG1 (Uncharacterized protein n=2 Tax=Megalodesulfovibrio gigas TaxID=879 RepID=T2G9U4_MEGG1)

HSP 1 Score: 58.5 bits (140), Expect = 3.270e-8
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 1
Query:   19 SHSHAFGHNLGCYLNRENTNVDK--PYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTG 228
            S +H  GHN G + +R +T+      Y +GY+       F TIM+  CS     R+N++SNPE ++ G PTG
Sbjct:  318 SFAHECGHNQGAHHDRASTSGQGVYSYSYGYQQLSASPQFRTIMAYNCSGDGCERVNYWSNPEVSYNGYPTG 389          
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: A0A2V8M050_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8M050_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 4.500e-8
Identity = 31/81 (38.27%), Postives = 44/81 (54.32%), Query Frame = 1
Query:    7 LDNRSHSHAFGHNLGCYLNRENTNVDK-------PYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTG 228
            +DN + +H  GHN+G +  +++ N D        PY +GY+       F TIM+     G  PRIN++SNP  T  GLPTG
Sbjct:  316 VDNYTFAHEMGHNMGAHHAKDDLNPDGTVPSGAYPYSNGYKQKTGPNRFRTIMAYDGDCG-CPRINYWSNPNVTVSGLPTG 395          
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: A0A0S2F801_LYSAN (Peptidyl-Asp metalloendopeptidase domain protein n=3 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A0S2F801_LYSAN)

HSP 1 Score: 57.4 bits (137), Expect = 8.340e-8
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 1
Query:   19 SHSHAFGHNLGCYLN-RENTNVDKPYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTGTA 234
            S +H  GHN G + +    TN   PY HGY +      + TIM+  C S   PR+N++SNP  T+ G+P GTA
Sbjct:  333 SFAHEIGHNFGAHHDPNSGTNGTYPYGHGYWA--PNKTWRTIMAYNCGSN-CPRLNYWSNPNITYNGVPMGTA 402          
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: K6HA13_9DELT (Uncharacterized protein n=1 Tax=Solidesulfovibrio magneticus str. Maddingley MBC34 TaxID=1206767 RepID=K6HA13_9DELT)

HSP 1 Score: 55.1 bits (131), Expect = 5.470e-7
Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 1
Query:   25 SHAFGHNLGCYLNRENTN--VDKPYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTG 228
            +H  GHN G    R N +  +   Y +GY+      PF TIM+  C  G   R+N++SNP+ ++ G PTG
Sbjct:  332 AHECGHNQGAQHERANASPPILYSYAYGYQQTAASPPFRTIMAYNCDGG-CTRVNYWSNPDVSYNGYPTG 400          
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: UPI0012446EA6 (Uncharacterized protein n=5 Tax=Cupriavidus pauculus TaxID=82633 RepID=UPI0012446EA6)

HSP 1 Score: 55.1 bits (131), Expect = 5.580e-7
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    7 LDNRSHSHAFGHNLGCYLNRE-NTNVDKPYEHGYRSCDTQLP--FSTIMSVKCSSG-QAPRINFYSNPEATWRGLPTGTA 234
            + N + +H  GH LG   + + +TN + PY +GY+     LP  + TIM+  CSSG   PR+N++S+P  ++RG+P G A
Sbjct:  543 IGNYTFAHEIGHLLGATHDEQTSTNKNYPYGYGYK-----LPGKWRTIMAYSCSSGGDCPRLNYWSSPTLSFRGVPLGDA 617          
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: UPI001926534C (M12 family metallo-peptidase n=1 Tax=Cedecea davisae TaxID=158484 RepID=UPI001926534C)

HSP 1 Score: 54.7 bits (130), Expect = 7.450e-7
Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = 1
Query:   25 SHAFGHNLGCYLNRENTNVDKP----YEHGYRSCDTQLPFS---TIMSVKCSSGQAPRINFYSNPEATWRGLPTGT 231
            +H  GHN+G        N        Y HGY+  ++++      TIMS  C+SG   R+N +SNP  T+RGLPTG+
Sbjct:  322 AHEMGHNIGVSHELAQYNGTPKRLPCYRHGYKH-ESEIALERWRTIMSYNCTSGNCDRLNMFSNPRYTYRGLPTGS 396          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JF50_9PHAE8.760e-1642.05LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5JRC1_9PHAE1.280e-1338.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCC0_ECTSI7.250e-1240.79Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarp... [more]
A0A7T0G2Z3_9BACT3.740e-938.75Uncharacterized protein n=1 Tax=Candidatus Nitrohe... [more]
T2G9U4_MEGG13.270e-837.50Uncharacterized protein n=2 Tax=Megalodesulfovibri... [more]
A0A2V8M050_9BACT4.500e-838.27Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A0S2F801_LYSAN8.340e-841.10Peptidyl-Asp metalloendopeptidase domain protein n... [more]
K6HA13_9DELT5.470e-737.14Uncharacterized protein n=1 Tax=Solidesulfovibrio ... [more]
UPI0012446EA65.580e-738.75Uncharacterized protein n=5 Tax=Cupriavidus paucul... [more]
UPI001926534C7.450e-738.16M12 family metallo-peptidase n=1 Tax=Cedecea davis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52286contigH-paniculata_contig52286:130..756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.1
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog1304872.JAGC01000003_gene3276
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs1PHGX@1224,2MEPR@213115,2X1BB@28221,437VV@68525,COG3291@1,COG3291@2
COG Functional cat.S
Best tax levelDesulfovibrionales
Best eggNOG OGNA|NA|NA
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930521.155218-CDS-H-paniculata_contig52286:129..2351622930521.155218-CDS-H-paniculata_contig52286:129..235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52286 130..235 -
1691481329.7228742-CDS-H-paniculata_contig52286:129..2351691481329.7228742-CDS-H-paniculata_contig52286:129..235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52286 130..235 -
1622930521.1749675-CDS-H-paniculata_contig52286:628..7561622930521.1749675-CDS-H-paniculata_contig52286:628..756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52286 629..756 -
1691481329.7346735-CDS-H-paniculata_contig52286:628..7561691481329.7346735-CDS-H-paniculata_contig52286:628..756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52286 629..756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52286.12596.1prot_H-paniculata_contig52286.12596.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52286 130..756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52286.12596.1

>prot_H-paniculata_contig52286.12596.1 ID=prot_H-paniculata_contig52286.12596.1|Name=mRNA_H-paniculata_contig52286.12596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
SCLDNRSHSHAFGHNLGCYLNRENTNVDKPYEHGYRSCDTQLPFSTIMSV
KCSSGQAPRINFYSNPEATWRGLPTGTA
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mRNA from alignment at H-paniculata_contig52286:130..756-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52286.12596.1 ID=mRNA_H-paniculata_contig52286.12596.1|Name=mRNA_H-paniculata_contig52286.12596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=627bp|location=Sequence derived from alignment at H-paniculata_contig52286:130..756- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGTGCTTGGACAACCGCTCGCACTCCCACGCGTTCGGCCACAACCTGGG CTGCTACTTGAACAGGGAAAACACGAATGTCGACAAGCCTTACGAGCATG GCTACCGGAGTTGCGACACGCAACTGCCGTGAGTTTATTGATTGGCGGCT GACTTCACGAGAACAGTTATGGTGTAGCCTAATCAAATGTTCTTGTCACC GTCCGTTAGGGTTACATGACTGCAGGCCAAAACCATCAATCTAGACCATC TTGTGGTCGGAATCCACGCAGCAGTTGAGAGAGGGAGAGAAGATTTTCGG TGGCTGTACGGATAAGATCGGTTAGCGCTGGATATAACACGTATAATGAC GAGCAACAAATCAATGAGGTTAAGGTTTTATTGTTTTTTCATGCTTCAGC AACCGTCAAACATAGGTTGCCTGGCAGTAAGCGATCTACTTGTGGATAGC GACTCAGTGTTTTGTCGTTTCTTACTTTTGGTCTACTGTATGATGTTGCA TCGCTCCCAACGGATTATCAGGTTCAGCACCATCATGAGCGTCAAATGCT CGTCTGGCCAAGCCCCAAGGATAAACTTCTACTCTAACCCCGAGGCGACC TGGAGAGGCCTTCCCACCGGTACTGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig52286:130..756-

>mRNA_H-paniculata_contig52286.12596.1 ID=mRNA_H-paniculata_contig52286.12596.1|Name=mRNA_H-paniculata_contig52286.12596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig52286:130..756- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGTGCTTGGACAACCGCTCGCACTCCCACGCGTTCGGCCACAACCTGGG
CTGCTACTTGAACAGGGAAAACACGAATGTCGACAAGCCTTACGAGCATG
GCTACCGGAGTTGCGACACGCAACTGCCTCGTGCTTGGACAACCGCTCGC
ACTCCCACGCGTTCGGCCACAACCTGGGCTGCTACTTGAACAGGGAAAAC
ACGAATGTCGACAAGCCTTACGAGCATGGCTACCGGAGTTGCGACACGCA
ACTGCCGTTCAGCACCATCATGAGCGTCAAATGCTCGTCTGGCCAAGCCC
CAAGGATAAACTTCTACTCTAACCCCGAGGCGACCTGGAGAGGCCTTCCC
ACCGGTACTGCCGTTCAGCACCATCATGAGCGTCAAATGCTCGTCTGGCC
AAGCCCCAAGGATAAACTTCTACTCTAACCCCGAGGCGACCTGGAGAGGC
CTTCCCACCGGTACTGCC
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