mRNA_H-paniculata_contig52286.12596.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 8.760e-16 Identity = 37/88 (42.05%), Postives = 49/88 (55.68%), Query Frame = 1
Query: 1 SCLDNRSHSHAFGHNLGCYLNRENTNVDKPYEHGYRSCDTQLPFSTIMSVK---CSSGQAP-------RINFYSNPEATWRGLPTGTA 234
+C DN SH+H HN+GCY +R+N+ Y HGYR C P+ TIMS C P ++N++SNPE T+ PTGTA
Sbjct: 478 NCFDNFSHTHEIAHNMGCYHDRDNSETQDEYRHGYRYCTGSDPYRTIMSYYQNGCGGDPTPEADPIVPQVNYFSNPEVTYLNKPTGTA 565
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 1.280e-13 Identity = 34/88 (38.64%), Postives = 48/88 (54.55%), Query Frame = 1
Query: 1 SCLDNRSHSHAFGHNLGCYLNRENTNVDKPYEHGYRSCDTQLPFSTIMSVK---CSSGQA-------PRINFYSNPEATWRGLPTGTA 234
+C DN SH+H HN+GCY ++ N++ Y HG+R C+ P+ TIMS C PR+N++SNP T+ TGTA
Sbjct: 298 NCFDNFSHTHEIAHNMGCYHDKNNSDTQHAYRHGWRYCEGADPYRTIMSYYHNGCGGDPTSEDDPIVPRVNYFSNPNVTYLNKSTGTA 385
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: D8LCC0_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC0_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 7.250e-12 Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 1
Query: 4 CLDNRSHSHAFGHNLGCYLNRENTNVDKPYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTGT 231
CLDN SH H GHN+G NRE+T+ + Y H R C P+ TIM+ + QAPR+ +S + T+ GT
Sbjct: 323 CLDNLSHIHEIGHNMGANHNREDTSSEHDYAHAQRYCTGDTPYRTIMAYETGCLQAPRVAMFSTQDKTYASKSLGT 398
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: A0A7T0G2Z3_9BACT (Uncharacterized protein n=1 Tax=Candidatus Nitrohelix vancouverensis TaxID=2705534 RepID=A0A7T0G2Z3_9BACT) HSP 1 Score: 61.2 bits (147), Expect = 3.740e-9 Identity = 31/80 (38.75%), Postives = 41/80 (51.25%), Query Frame = 1
Query: 4 CLDNRSHSHAFGHNLGCYLNRENTNVDKP---YEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTGTA 234
C+ N + +H GHNLG +R N N D + HGY DT F TIM + RI ++SNP+AT+ G G A
Sbjct: 308 CISNHTFTHEIGHNLGARHDRANDNTDNSPFTFNHGY--IDTSNNFRTIMGTQTGCSTCTRIQYWSNPDATYNGAVLGVA 385
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: T2G9U4_MEGG1 (Uncharacterized protein n=2 Tax=Megalodesulfovibrio gigas TaxID=879 RepID=T2G9U4_MEGG1) HSP 1 Score: 58.5 bits (140), Expect = 3.270e-8 Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 1
Query: 19 SHSHAFGHNLGCYLNRENTNVDK--PYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTG 228
S +H GHN G + +R +T+ Y +GY+ F TIM+ CS R+N++SNPE ++ G PTG
Sbjct: 318 SFAHECGHNQGAHHDRASTSGQGVYSYSYGYQQLSASPQFRTIMAYNCSGDGCERVNYWSNPEVSYNGYPTG 389
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: A0A2V8M050_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8M050_9BACT) HSP 1 Score: 58.2 bits (139), Expect = 4.500e-8 Identity = 31/81 (38.27%), Postives = 44/81 (54.32%), Query Frame = 1
Query: 7 LDNRSHSHAFGHNLGCYLNRENTNVDK-------PYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTG 228
+DN + +H GHN+G + +++ N D PY +GY+ F TIM+ G PRIN++SNP T GLPTG
Sbjct: 316 VDNYTFAHEMGHNMGAHHAKDDLNPDGTVPSGAYPYSNGYKQKTGPNRFRTIMAYDGDCG-CPRINYWSNPNVTVSGLPTG 395
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: A0A0S2F801_LYSAN (Peptidyl-Asp metalloendopeptidase domain protein n=3 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A0S2F801_LYSAN) HSP 1 Score: 57.4 bits (137), Expect = 8.340e-8 Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 1
Query: 19 SHSHAFGHNLGCYLN-RENTNVDKPYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTGTA 234
S +H GHN G + + TN PY HGY + + TIM+ C S PR+N++SNP T+ G+P GTA
Sbjct: 333 SFAHEIGHNFGAHHDPNSGTNGTYPYGHGYWA--PNKTWRTIMAYNCGSN-CPRLNYWSNPNITYNGVPMGTA 402
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: K6HA13_9DELT (Uncharacterized protein n=1 Tax=Solidesulfovibrio magneticus str. Maddingley MBC34 TaxID=1206767 RepID=K6HA13_9DELT) HSP 1 Score: 55.1 bits (131), Expect = 5.470e-7 Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 1
Query: 25 SHAFGHNLGCYLNRENTN--VDKPYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTG 228
+H GHN G R N + + Y +GY+ PF TIM+ C G R+N++SNP+ ++ G PTG
Sbjct: 332 AHECGHNQGAQHERANASPPILYSYAYGYQQTAASPPFRTIMAYNCDGG-CTRVNYWSNPDVSYNGYPTG 400
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: UPI0012446EA6 (Uncharacterized protein n=5 Tax=Cupriavidus pauculus TaxID=82633 RepID=UPI0012446EA6) HSP 1 Score: 55.1 bits (131), Expect = 5.580e-7 Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 1
Query: 7 LDNRSHSHAFGHNLGCYLNRE-NTNVDKPYEHGYRSCDTQLP--FSTIMSVKCSSG-QAPRINFYSNPEATWRGLPTGTA 234
+ N + +H GH LG + + +TN + PY +GY+ LP + TIM+ CSSG PR+N++S+P ++RG+P G A
Sbjct: 543 IGNYTFAHEIGHLLGATHDEQTSTNKNYPYGYGYK-----LPGKWRTIMAYSCSSGGDCPRLNYWSSPTLSFRGVPLGDA 617
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Match: UPI001926534C (M12 family metallo-peptidase n=1 Tax=Cedecea davisae TaxID=158484 RepID=UPI001926534C) HSP 1 Score: 54.7 bits (130), Expect = 7.450e-7 Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = 1
Query: 25 SHAFGHNLGCYLNRENTNVDKP----YEHGYRSCDTQLPFS---TIMSVKCSSGQAPRINFYSNPEATWRGLPTGT 231
+H GHN+G N Y HGY+ ++++ TIMS C+SG R+N +SNP T+RGLPTG+
Sbjct: 322 AHEMGHNIGVSHELAQYNGTPKRLPCYRHGYKH-ESEIALERWRTIMSYNCTSGNCDRLNMFSNPRYTYRGLPTGS 396 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52286.12596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig52286.12596.1 >prot_H-paniculata_contig52286.12596.1 ID=prot_H-paniculata_contig52286.12596.1|Name=mRNA_H-paniculata_contig52286.12596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp SCLDNRSHSHAFGHNLGCYLNRENTNVDKPYEHGYRSCDTQLPFSTIMSVback to top mRNA from alignment at H-paniculata_contig52286:130..756- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig52286.12596.1 ID=mRNA_H-paniculata_contig52286.12596.1|Name=mRNA_H-paniculata_contig52286.12596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=627bp|location=Sequence derived from alignment at H-paniculata_contig52286:130..756- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig52286:130..756- >mRNA_H-paniculata_contig52286.12596.1 ID=mRNA_H-paniculata_contig52286.12596.1|Name=mRNA_H-paniculata_contig52286.12596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig52286:130..756- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |