mRNA_H-paniculata_contig5221.12589.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5221.12589.1
Unique NamemRNA_H-paniculata_contig5221.12589.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5221.12589.1 vs. uniprot
Match: D8LS86_ECTSI (PARP catalytic domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS86_ECTSI)

HSP 1 Score: 402 bits (1034), Expect = 6.230e-126
Identity = 222/464 (47.84%), Postives = 271/464 (58.41%), Query Frame = 3 
Query:   45 CCIPECTRPRFE-REGIVHDFCGRTHASEALSRGLIDNLRPPH------GVCHRCQLRGCNKDVYFDHETGRXXXXXXXXXXXXXXA--RREWPLEDS----------KGRKEXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAGRAQQSRQXXXXXXXXXXXXXXXXXXXXXXXGIRCARATGKGDLAGSSXXXXXXXXXXXXXXXXXXXXXGFCCEEHRFRATRRDLAPITEPFVDRTFRGGTTSATDFRLSVLTNRHADHQSVKEQFKKKWIKAEPASGVSVLRIFKVEVPADIRKKTKRYQEIVTNVRRRFHGTSCSDACNFFVDLQGGPCGEQMCAVCNICTHGFKV-SCAGRTAQRAKFDLRFGEGLYFSSVSGKANDYAELSEKTDKKGRQVRCMFVASVAVGNAFVTHEGKLPVERCPPQGYDSVIGEVGPNLNYDEVVVYKEEAALPTHLIVYAFN 1376
            C +P+C  P FE ++G VH +C RT ++EAL+R    +LR             RC+L GC++ VY D  +GR              A  +R  P   +          KG  E                            VAG A  + +                       G RCA   G   L G                       G+CCE+HR RAT+R L P  EPFVDRTFRGGTTSA DF+LSVLTNRH ++ S K+QF +KW K    +GVSVLRIFKV+VP DIR++T+     V NV+RRFHGTSCS+ C FFVDL+GGPCGE  C VCNICTHGF++    G TA+R  FDLR+G+GLYFSSVSGKANDYAELSEKTD+ G++VRCMF++SV VG AF+T+EGKLP E+CPP G+DSV+GE GP LNY EVVVYKEEAALPTHLIVYA +
Sbjct:   12 CALPDCQSPCFEDQDGFVHSYCSRTCSNEALARAKWASLRSSSRNRGGGSDGSRCKLAGCSRTVYVDERSGRVHEFCGRGHANEAMANGKRSSPSRGTGAGKGAPAHEKGTGECSLEGCKELVYRDPVTKVDSKYCSNRHYVAGTAMLNSECIRDGCSRAAWVDEGTGGVLDYCGSRCAGEVGMNYLVGVGVCSLPGCVNPNFVHPRDRQETGYCCEDHRLRATQRSLGPNPEPFVDRTFRGGTTSADDFQLSVLTNRHPEYLSRKQQFMQKWEKPLVGTGVSVLRIFKVQVPKDIRRRTETCMGQVGNVQRRFHGTSCSNVCTFFVDLRGGPCGESTCKVCNICTHGFQLRDNVGDTARRTNFDLRYGDGLYFSSVSGKANDYAELSEKTDRSGKKVRCMFLSSVTVGRAFITYEGKLPPEQCPPPGFDSVVGEKGPALNYPEVVVYKEEAALPTHLIVYALH 475
[Close]
BLAST of mRNA_H-paniculata_contig5221.12589.1 vs. uniprot
Match: D8LS87_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS87_ECTSI)

HSP 1 Score: 379 bits (974), Expect = 1.860e-117
Identity = 217/444 (48.87%), Postives = 260/444 (58.56%), Query Frame = 3 
Query:   45 CCIPECTRPRFEREGIVHDFCGRTHASEALSRGLIDNLRPPHGVCHRCQLRGCNKDVYFDHETGRXXXXXXXXXXXXXXARREWPLEDSKGRKEXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAGRAQQSRQXXXXXXXXXXXXXXXXXXXXXXXGIRCARATGKGDLAGSSXXXXXXXXXXXXXXXXXXXXX-GFCCEEHRFRATRRDLAPITEPFVDRTFRGGTTSATDFRLSVLTNRHADHQSVKEQFKKKWIKAEPASGVSVLRIFKVEVPADIRKKTKRYQEIVTNVRRRFHGTSCSDACNFFVDLQGGPCGEQMCAVCNICTHGFKVSC-AGRTAQRAKFDLRFGEGLYFSSVSGKANDYAELSEKTDKKGRQVRCMFVASVAVGNAFVTHEGKLPVERCPPQGYDSVIGEVGPNLNYDEVVVYKEEAALPTHLIVYA 1370
            C IPECTRP  +   +VHDFCGRTHA EA+SRG+  +LR PHG CH C+L GC+  VYFD      XXXXXXXXXXXXXA  +W    S G                                     Q+                           RCA   G G  AGSS                       +C E+HR R  ++ L    + +V+R F  GTT  TDF+L VL+  H  + S+ +QF  KW+K EP  G+SV +I  VEVPAD+R+KTK Y++ V NVRRRFHGTSCS  CNFFVDL+G PC ++ C VC+ICTHGF +    G TA+R  F LR+GEGLYFSSVSGKANDYA+ SEKTD  GR++RCMFVA+VA G AF THE  L    CPP GYDSV+GEVG  LNYDE+VVYK+EAALPTHLIVY+
Sbjct:   11 CGIPECTRPCHDGGTVVHDFCGRTHAEEAVSRGIRPSLRRPHGNCHECKLDGCSLPVYFDSAKKHVXXXXXXXXXXXXXADGQWTRSTSAGNTNAGGSTCKLPGCHLGVFIDPATSLESDYCSKSHRAQANTRECLRKGCTSTAWLANIEGPQYCSSRCAIDDG-GQKAGSSRSCKLAGCSEVALYHHQTGNALDYCGEDHRVRNEQQTLGTNGDTYVERIFHRGTTGTTDFKLCVLSKAHPHYPSLIDQFVNKWVKPEPVGGISVEKILTVEVPADVRRKTKTYEKTVGNVRRRFHGTSCSTKCNFFVDLRGNPCSDKGCKVCSICTHGFTLQGNVGGTARRTNFGLRYGEGLYFSSVSGKANDYADFSEKTDSNGRRLRCMFVANVAAGKAFKTHETSLQQNECPPAGYDSVVGEVGQGLNYDELVVYKDEAALPTHLIVYS 453
[Close]
BLAST of mRNA_H-paniculata_contig5221.12589.1 vs. uniprot
Match: D8LS88_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS88_ECTSI)

HSP 1 Score: 343 bits (880), Expect = 6.750e-104
Identity = 230/452 (50.88%), Postives = 278/452 (61.50%), Query Frame = 3 
Query:   33 ATTSCCIPECTRPRFEREGIVHDFCGRTHASEALSRGLIDNLRPPHGVCHRCQLRGCNKDVYFDHETGRXXXXXXXXXXXXXXARREWPLEDSKGRKEXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAGRAQQ-SRQXXXXXXXXXXXXXXXXXXXXXXXGIRCARATGKGDLAGSSXXXXXXXXXXXXXXXXXXXXXGFCCEEHRFRATRRDLAPI--TEPFVDRTFRGGTTSATDFRLSVLTNRHADHQSVKEQFKKKWIKAEPASGVSVLRIFKVEVPADIRKKTKRYQEIVTNVRRRFHGTSCSDACNFFVDLQGGPCGEQMCAVCNICTHGFKVS-CAGRTAQRAKFDLRFGEGLYFSSVSGKANDYAELSEKTDKKGRQVRCMFVASVAVGNAFVTHEGKLPVERCPPQGYDSVIGEVGPNLNYDEVVVYKEEAALPTHLIVYAFN 1376
            A  SC IPECTRPR +R GIVH+FCGRTHA EA+SRGL   L  PHG CH CQLRGC+K VYFD +TGR  XXXXXXXXXXX  R +W          XXXXXXXXXXXXXXXXXXXXXXXX    + G+A+  +R+                         R       G     S                     G+C E HR  +       +  +EP+V   +  GT     F L  L   H +  S++ QF  KW+K +PA G+SV+RIF+VEVPA++R K  +Y   V N+RRRFHGTSCSD CNF VD Q  PCG + C++CNI   GFK+    GRTA    F+LR+G+G+YFSSVSGKANDYA+L+ KT K G ++RCMFVA+VA G A+ T E  L   +CPP GY+SV+GEVG  LNYDE+VVYKEEAALPTHLIVYA +
Sbjct:    6 APGSCDIPECTRPRHQRAGIVHNFCGRTHAMEAVSRGLAAKLDRPHGRCHVCQLRGCSKPVYFDSDTGRVYXXXXXXXXXXXMDRGDWIPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSHYLTGQARLCARRGCTSTAWLANTDSRQYCSAYCFSKERLVLNKHAG-----SVCKLRYCSVGTLHHLQTGEDLGYCSEGHRLLSKPPSKGQLRSSEPYVHGVYSVGTPR---FNLCALDEAHPECPSLRSQFSTKWVKPQPAEGISVVRIFRVEVPAEVRDKHDKYARTVRNIRRRFHGTSCSDGCNFIVDPQRSPCGLRSCSLCNISMRGFKLDENVGRTALARNFNLRYGKGVYFSSVSGKANDYADLTAKTAKDGTKLRCMFVANVAAGKAYSTKEKALDDGKCPPPGYESVVGEVGQGLNYDELVVYKEEAALPTHLIVYALH 449
[Close]
BLAST of mRNA_H-paniculata_contig5221.12589.1 vs. uniprot
Match: D8LSB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB5_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 1.470e-82
Identity = 200/384 (52.08%), Postives = 232/384 (60.42%), Query Frame = 3 
Query:   30 MATTSCCIPECTRPRFEREGIVHDFCGRTHASEALSRGLIDNLRPPHGVCHRCQLRGCNKDVYFDHETGRXXXXXXXXXXXXXXARREWP---LEDSKGRKEXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAGRAQQSRQXXXXXXXXXXXXXXXXXXXXXXX-----GIRCARATGKGDLAGSSXXXXXXXXXXXXXXXXXXXXXGFCCEEHRFRATRRDLAPITEPFVDRTFRGGTTSATDFRLSVLTNRHADHQSVKEQFKKKWIKAEPASGVSVLRIFKVEVPADIRKKTKRYQEIVTNVRRRFHGTSCSDACNFFVDLQGGPCGEQMCAVCNICTHGFKV-SCAGRTAQRAKFDLRFGEGLYFSSVSGKANDYAELSEK 1154
            MA   C +PEC RPR +R GI+HDFC RTHA EA   GLI  L  PHG CH CQL GCN +V+FD  T   XXXXXXXXXX   AR +WP   ++ S     XXXXXXXXXXXXXXXXXXXXXXXXXXX     AQ + +                            G RCA   G   L G                       G+CC+ HR +A  R+L    E  VDRTFRGG +   DF+LSVLT  H  + S+KEQF  K+ K  P  G+SV RIFKV+VP D+R+K K ++E   N RRRFHGTSCSDAC FF+DL+GGPCG   C VC+ICTHGF++    GRTAQR   +LR+GEGLYFSSVSGKANDYA  SEK
Sbjct:    1 MAMMVCSLPECYRPRHQRRGIIHDFCSRTHAQEAADMGLIPPLHRPHGRCHVCQLHGCNTEVFFDEATNTVXXXXXXXXXXMARARGQWPRPGMQGSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPAAEEPLTVCQNVRCQRPAWMDHRSGDQLAFCGSRCAYTCGAQHLVGQMKCSLPGCNDFTMLHDRTMDDMGYCCDYHRIKAEERNLTQNPEAHVDRTFRGGPSD--DFKLSVLTKSHQAYSSLKEQFLVKFQK--PVDGLSVERIFKVQVPGDVRQKHKVFEEATNNTRRRFHGTSCSDACRFFMDLRGGPCGRPDCNVCSICTHGFRLRGSVGRTAQRTNMNLRYGEGLYFSSVSGKANDYAAQSEK 380
[Close]
BLAST of mRNA_H-paniculata_contig5221.12589.1 vs. uniprot
Match: D8LKU8_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU8_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 5.840e-78
Identity = 135/232 (58.19%), Postives = 170/232 (73.28%), Query Frame = 3 
Query:  681 TEPFVDRTFRGGTTSATDFRLSVLTNRHADHQSVKEQFKKKWIKAEPASGVS-VLRIFKVEVPADIRKKTKRYQEIVTNVRRRFHGTSCSDACNFFVDLQGGPCGEQMCAVCNICTHGFKVSCAGR-TAQRAKFDLRFGEGLYFSSVSGKANDYAELSEKTDKKGRQVRCMFVASVAVGNAFVTHEGKLPVERCPPQGYDSVIGEVGPNLNYDEVVVYKEEAALPTHLIVYA 1370
            T+  V++TFRGGTT ATDF LS L+  H  + S+  QF  KW+K     GV  VLRI +V+VP DI +KT  Y++   NVRRRFHGTSCS  CNFFVDL+G PC  + C VCNICTHGF +    R TA+RA +  R+GEGLYFSSVSGK+NDYA+ SEK    G++VRCMFVA+V  GNA++T +G L  + CPP GYDSV+GEVG  L +DE+V Y++EAA+P++LIVYA
Sbjct:    4 TQSHVEQTFRGGTTGATDFVLSALSKAHPQYPSLCHQFVSKWLKP----GVPRVLRILEVKVPDDIYQKTVCYKKAKGNVRRRFHGTSCSAQCNFFVDLKGNPCSSKACNVCNICTHGFVLRDNVRGTARRANYRRRYGEGLYFSSVSGKSNDYAQQSEKVGSDGKKVRCMFVANVTAGNAYLTQQGSLGQDMCPPAGYDSVVGEVGSGLIHDELVAYEDEAAIPSYLIVYA 231
[Close]
BLAST of mRNA_H-paniculata_contig5221.12589.1 vs. uniprot
Match: A0A6H5JBF5_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBF5_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 1.300e-64
Identity = 111/215 (51.63%), Postives = 147/215 (68.37%), Query Frame = 3 
Query:  741 LSVLTNRHADHQSVKEQFKKKWIKAEPASGVSVLRIFKVEVPADIRKKTKRYQEIVTNVRRRFHGTSCSDACNFFVDLQGG--PCGEQMCAVCNICTHGFKVSC-AGRTAQRAKFDLRFGEGLYFSSVSGKANDYAELSEKTDKKGRQVRCMFVASVAVGNAFVTHEGKLPVERCPPQGYDSVIGEVGPNLNYDEVVVYKEEAALPTHLIVYAFN 1376
            L +L     ++ +++  F  +W+K  PA GVS+ R++ ++V  ++R+K +RY+ +  N+ +RFHGTSC++ CNF VD QGG  PCG+  C+VCNIC  GFK+      TA+     LR+GEG+Y +SVSGKANDYA  S K      ++RCMFVASVAVG AF T   +LP  +CPP GY SV+GEVG  LN+DE VVY EEAALPTHLIVYA  
Sbjct:   17 LQMLEENSREYTALRGLFNARWMKPRPAKGVSIERVYSIQVSREMREKHERYKGMFGNLCQRFHGTSCNEGCNFMVDPQGGQAPCGKSSCSVCNICKLGFKLGANVAGTARATGVPLRYGEGIYLTSVSGKANDYASRSAKKIGIASELRCMFVASVAVGRAFKTKSTRLPANQCPPPGYQSVVGEVGQGLNFDEFVVYNEEAALPTHLIVYALR 231
[Close]
BLAST of mRNA_H-paniculata_contig5221.12589.1 vs. uniprot
Match: D8LKU5_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU5_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 2.350e-64
Identity = 122/223 (54.71%), Postives = 160/223 (71.75%), Query Frame = 3 
Query:  714 GTTSATDFRLSVLTNRHADHQSVKEQFKKKWIKAEPASGVSVLRIFKVEVPADIRKKTKRYQE-IVTNVRRRFHGTSCSDACNFFVDLQGG--PCGEQMCAVCNICTHGFKVSC-AGRTAQRAKFDLRFGEGLYFSSVSGKANDYAELSEKTDKKGRQVRCMFVASVAVGNAFVTHEGKLPVERCPPQGYDSVIGEVGPNLNYDEVVVYKEEAALPTHLIVYA 1370
            G++S+T   L +L +   +++++ + FK +W+K +P +GVS++RIF ++VP ++  K + Y+  +V N+R+RFHGTSC+D CNF VD QG   PCG   C+VCNIC  GFK+     RTA+ +   LR+G G+YFSSVSGKANDYA LS KT   G ++RCMFVA+VA G AF T +  LP   CPP G  SV+GEVG  LNYDEVVVYKEEAALPTHLIVYA
Sbjct:  456 GSSSST---LRILDDDDWEYEALCDLFKTRWLKPQPTNGVSIVRIFSIQVPLEVHDKHELYKRMVVVNLRQRFHGTSCNDGCNFMVDPQGATAPCGLSSCSVCNICMLGFKLGKNVARTARASGIPLRYGTGIYFSSVSGKANDYARLSAKTGSDGAELRCMFVANVAGGKAFSTKKSHLPQSECPPSGCQSVVGEVGHALNYDEVVVYKEEAALPTHLIVYA 675
[Close]
BLAST of mRNA_H-paniculata_contig5221.12589.1 vs. uniprot
Match: D7FXR2_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR2_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 3.520e-63
Identity = 125/252 (49.60%), Postives = 165/252 (65.48%), Query Frame = 3 
Query:  636 EEHRFRATRRDLAPITEPFVDRTFRGG-TTSATDFRLSVLTNRHADHQSVKEQFKKKWIKAEPASGVSVLRIFKVEVPADIRKKTKRYQEIVTNVRRRFHGTSCSDACNFFVDLQGG--PCGEQMCAVCNICTHGFKVSC-AGRTAQRAKFDLRFGEGLYFSSVSGKANDYAELSEKTDKKGR-QVRCMFVASVAVGNAFVTHEGKLPVERCPPQGYDSVIGEVGPNLNYDEVVVYKEEAALPTHLIVYAFN 1376
            E+ R  AT  +     E    RT RG  +   +   L  L    A+ +++ + F  +WIK  P +GVS++RIF ++V  ++R+K +RY+    N+ +RFHGTSC++ CNF VD QGG  PCGE  C+VCNIC  GF++     RTA+  +F LR+G G+Y +SVSGKANDYA  S K  K G  ++RCMFVASVA+GN F T   +LP ++CPP GY SV+GE G  LN+DE VVYKEEAALPTHLIVYA  
Sbjct:  178 EDWRENATEDERKKNVEHEQRRTSRGVLSVGFSGSFLQRLEGNGAECKALCDLFNARWIKPRPENGVSIVRIFSIQVSREVREKHERYKGKFGNLCQRFHGTSCNEGCNFMVDPQGGQAPCGESSCSVCNICKLGFQLGPNVARTARATRFPLRYGAGIYLTSVSGKANDYASRSAK--KVGELELRCMFVASVALGNTFKTTSARLPADQCPPPGYHSVVGEAGQRLNFDEFVVYKEEAALPTHLIVYALR 427
[Close]
BLAST of mRNA_H-paniculata_contig5221.12589.1 vs. uniprot
Match: D8LKU6_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU6_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 7.260e-61
Identity = 116/225 (51.56%), Postives = 148/225 (65.78%), Query Frame = 3 
Query:  627 FCCEEHRFRATR--RDLAPITEPFVDRTFRGGTTSATDFRLSVLTNRHADHQSVKEQFKKKWIKAEPASGVS-VLRIFKVEVPADIRKKTKRYQEIVTNVRRRFHGTSCSDACNFFVDLQGGPCGEQMCAVCNICTHGFKVSC-AGRTAQRAKFDLRFGEGLYFSSVSGKANDYAELSEKTDKKGRQVRCMFVASVAVGNAFVTHEGKLPVERCPPQGYDSVIGE 1289
            +C   H+  A    + +  +T   V + FRGGTT ATDF LSVL+  H  + S+  QF  KW+K     GV  V RI +V+VPADI  K   Y++   N+RRRFHGTSCS  CNFFVDL+G PC  + C VCNICT+GF +    G TA+R    LR+GEGLYFSSVSGK+NDYA+ SEK    G++VRCMF+A+V  GNA++T +  L    CPP G+DSV+GE
Sbjct:   47 YCSRGHQAHAIALGQGMRTVTS-HVQQVFRGGTTGATDFMLSVLSKSHHQYSSLCHQFISKWVKG----GVPHVRRILEVKVPADIYGKYANYKKAKGNIRRRFHGTSCSAGCNFFVDLKGNPCSSRGCNVCNICTNGFMLQGNVGGTAKRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVGSDGKKVRCMFIANVTAGNAYLTQQVSLGQNMCPPAGHDSVVGE 266
[Close]
BLAST of mRNA_H-paniculata_contig5221.12589.1 vs. uniprot
Match: A0A836CLI2_9STRA (PARP catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLI2_9STRA)

HSP 1 Score: 223 bits (568), Expect = 2.140e-59
Identity = 205/515 (39.81%), Postives = 244/515 (47.38%), Query Frame = 3 
Query:   99 DFCGRTHASEALSRGLIDNLRPPHGVCHRCQLRGCNKDVYFDHETGRXXXXXXXXXXXXXXARREWPLEDSKGRKEXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAGRAQQSRQXXXXXXXXXXXXXXXXXXXXXXXGIRCARATGKGDLAGSSXXXXXXXXXXXXXXXXXXXXXGFCCEEHRFRATRRDLAPITEPFVDRTF---RGGTTSATD--FRLSVLTNRHADHQSVKEQFKKKWIKAEPASGVSVLRIFKVEVPADI----------------------------------------------------------------------------------RKKTKRYQEIVTN-VRRRFHGTSCSDACNFFVDLQGGPCGEQMCAVCNICTHGFKVSCAGRTAQRAKFDLRFGEGLYFSSVSGKANDYAELSEKTDKKGRQV---RCMFVASVAVGNAFVTHEGKLPVERCPPQGYDSVIGEVGPN-LNYDEVVVYKEEAALPTHLIVY 1367
            DFCGRTHA+EA+ RG+I +L PPHG CH C+L GC+  V+F+H+TGR              A             +   XXXXXXXXXXXXXXXXXXXXXXXX    R     Q       XXXXXXXXXXXXXX        A     L G S                      FC   HR RA  R L  I E  V+R F   R   T  TD  F+LS+LT  HAD   V+EQF  KW K  P +  SV+R+FKV+VP  +                                                                                   +    Y+++  N VRRRFHGTSC   CNFFV+L+ GPCG   CAVC ICTHGF +  +G TA+R  F+LR+G GLYFSS+SGK++DYAELSE            R MFV SV VGNAF T E  L     PP  +DS++       LNYDE+VVY  EAA+PT +I Y
Sbjct:   16 DFCGRTHAAEAVERGIIPSLAPPHGRCHECKLPGCSATVFFEHDTGRVHDFCCRTHAYQAGALSGGGSSGGGYAAQGPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXREHAQMQSDGAAAAXXXXXXXXXXXXXX--------APRDCSLPGCSQPRRLDPYTGQPMH--------FCSHNHRQRAEERGLGAILEAGVERVFTMSRPNATGHTDTGFQLSLLTRTHADFAPVREQFLSKWTK--PGTPPSVIRVFKVKVPDHVFRGGSARRTYSSAPMNVVXXXXXXXXXXXXFSVIXXXXXXXXXXVIQMSVXXXXXXXXXXXXFSSAQXXXXXXXXXXXXXXXXRAYDAYKQLKGNRVRRRFHGTSCGIDCNFFVNLRDGPCGGHDCAVCGICTHGFLMEYSGATAERTNFNLRYGRGLYFSSISGKSHDYAELSEHVSPSNGHAARWRVMFVCSVVVGNAFETEEPTL-AGPLPPAAHDSIVANPSAGKLNYDELVVYCNEAAIPTFMIAY 511
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5221.12589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS86_ECTSI6.230e-12647.84PARP catalytic domain-containing protein n=2 Tax=E... [more]
D8LS87_ECTSI1.860e-11748.87PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LS88_ECTSI6.750e-10450.88PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LSB5_ECTSI1.470e-8252.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKU8_ECTSI5.840e-7858.19PARP catalytic domain-containing protein n=1 Tax=E... [more]
A0A6H5JBF5_9PHAE1.300e-6451.63PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LKU5_ECTSI2.350e-6454.71TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
D7FXR2_ECTSI3.520e-6349.60PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LKU6_ECTSI7.260e-6151.56PARP catalytic domain-containing protein n=1 Tax=E... [more]
A0A836CLI2_9STRA2.140e-5939.81PARP catalytic domain-containing protein n=1 Tax=T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5221contigH-paniculata_contig5221:2..13745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score383.6
Seed ortholog evalue1.2e-103
Seed eggNOG ortholog2880.D8LS87
Hectar predicted targeting categoryother localisation
EggNOG OGs28J37@1,2S14A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons9
Model size3290
Cds size1353
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930520.3891435-UTR-H-paniculata_contig5221:1..19091622930520.3891435-UTR-H-paniculata_contig5221:1..1909Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5221 2..1909 -
1691481329.3574731-UTR-H-paniculata_contig5221:1..19091691481329.3574731-UTR-H-paniculata_contig5221:1..1909Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5221 2..1909 -
1622930520.5560737-UTR-H-paniculata_contig5221:13716..137451622930520.5560737-UTR-H-paniculata_contig5221:13716..13745Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5221 13717..13745 -
1691481329.4590194-UTR-H-paniculata_contig5221:13716..137451691481329.4590194-UTR-H-paniculata_contig5221:13716..13745Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5221 13717..13745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930520.4010344-CDS-H-paniculata_contig5221:1909..20021622930520.4010344-CDS-H-paniculata_contig5221:1909..2002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 1910..2002 -
1691481329.3665624-CDS-H-paniculata_contig5221:1909..20021691481329.3665624-CDS-H-paniculata_contig5221:1909..2002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 1910..2002 -
1622930520.4189239-CDS-H-paniculata_contig5221:3398..35331622930520.4189239-CDS-H-paniculata_contig5221:3398..3533Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 3399..3533 -
1691481329.37666-CDS-H-paniculata_contig5221:3398..35331691481329.37666-CDS-H-paniculata_contig5221:3398..3533Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 3399..3533 -
1622930520.4376526-CDS-H-paniculata_contig5221:5624..58011622930520.4376526-CDS-H-paniculata_contig5221:5624..5801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 5625..5801 -
1691481329.3869085-CDS-H-paniculata_contig5221:5624..58011691481329.3869085-CDS-H-paniculata_contig5221:5624..5801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 5625..5801 -
1622930520.4531076-CDS-H-paniculata_contig5221:7157..72741622930520.4531076-CDS-H-paniculata_contig5221:7157..7274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 7158..7274 -
1691481329.3962348-CDS-H-paniculata_contig5221:7157..72741691481329.3962348-CDS-H-paniculata_contig5221:7157..7274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 7158..7274 -
1622930520.4700892-CDS-H-paniculata_contig5221:8513..87021622930520.4700892-CDS-H-paniculata_contig5221:8513..8702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 8514..8702 -
1691481329.4080205-CDS-H-paniculata_contig5221:8513..87021691481329.4080205-CDS-H-paniculata_contig5221:8513..8702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 8514..8702 -
1622930520.486388-CDS-H-paniculata_contig5221:9108..93161622930520.486388-CDS-H-paniculata_contig5221:9108..9316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 9109..9316 -
1691481329.420925-CDS-H-paniculata_contig5221:9108..93161691481329.420925-CDS-H-paniculata_contig5221:9108..9316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 9109..9316 -
1622930520.5000143-CDS-H-paniculata_contig5221:10143..102261622930520.5000143-CDS-H-paniculata_contig5221:10143..10226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 10144..10226 -
1691481329.4308379-CDS-H-paniculata_contig5221:10143..102261691481329.4308379-CDS-H-paniculata_contig5221:10143..10226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 10144..10226 -
1622930520.5162253-CDS-H-paniculata_contig5221:11491..116891622930520.5162253-CDS-H-paniculata_contig5221:11491..11689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 11492..11689 -
1691481329.4396665-CDS-H-paniculata_contig5221:11491..116891691481329.4396665-CDS-H-paniculata_contig5221:11491..11689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 11492..11689 -
1622930520.53778-CDS-H-paniculata_contig5221:13563..137161622930520.53778-CDS-H-paniculata_contig5221:13563..13716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 13564..13716 -
1691481329.4490604-CDS-H-paniculata_contig5221:13563..137161691481329.4490604-CDS-H-paniculata_contig5221:13563..13716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5221 13564..13716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5221.12589.1prot_H-paniculata_contig5221.12589.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5221 1910..13716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5221.12589.1

>prot_H-paniculata_contig5221.12589.1 ID=prot_H-paniculata_contig5221.12589.1|Name=mRNA_H-paniculata_contig5221.12589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=451bp
MATTSCCIPECTRPRFEREGIVHDFCGRTHASEALSRGLIDNLRPPHGVC
HRCQLRGCNKDVYFDHETGRVHDFCSRRHADMAMARREWPLEDSKGRKEC
KLSGCRELVYRDPVSGEESDYCSNRHVVAGRAQQSRQCVRPGCERTAWID
VNSGDPFDYCGIRCARATGKGDLAGSSQCSLPGCVEATLIDQVNGQDLGF
CCEEHRFRATRRDLAPITEPFVDRTFRGGTTSATDFRLSVLTNRHADHQS
VKEQFKKKWIKAEPASGVSVLRIFKVEVPADIRKKTKRYQEIVTNVRRRF
HGTSCSDACNFFVDLQGGPCGEQMCAVCNICTHGFKVSCAGRTAQRAKFD
LRFGEGLYFSSVSGKANDYAELSEKTDKKGRQVRCMFVASVAVGNAFVTH
EGKLPVERCPPQGYDSVIGEVGPNLNYDEVVVYKEEAALPTHLIVYAFNP
*
back to top

mRNA from alignment at H-paniculata_contig5221:2..13745-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5221.12589.1 ID=mRNA_H-paniculata_contig5221.12589.1|Name=mRNA_H-paniculata_contig5221.12589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13744bp|location=Sequence derived from alignment at H-paniculata_contig5221:2..13745- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAAGTGTCGTAAACGGTAGCAATAGTGCCATGGCCACCACTTCATGCTGC
ATCCCCGAGTGCACCAGGCCCCGCTTCGAGAGAGAGGGCATAGTTCACGA
TTTTTGCGGGCGGACTCATGCGAGCGAGGCTTTATCAAGGGGACTCATTG
ACAATCTCCGTCCTCCTCATGGCGTATGCCACGTGAGCATTTTGGTATTT
GTTTCGTAATCCCATGTGCACTGCAAGGAACTTGAGTGTATTCGATGTGA
AGGGCCTCTCGGTATATGCAGTTTTTACACATGCCCCAGCCCACAATAGT
CGTCTCTTCGCCCGAGCTATTCGTGCCGATATTAGTAGCCAACGTTGTCC
TCATGCCCTCGTACCACATAAATGGGAGGTGTTTTTCCAGGGAGTCGATT
TCCTGCCTTCGTTGATGAGTGATGGTATTTGTCAGCTGCGCCGTGTTGTG
TTTGTTGTGCGAATAGTATATCCTCTTCCAAAAATATTGCACATGTAAAG
GAGGGGTGCGCACCCGAATTGAGATCTTGTAGACTGCAGGACCGCAGTGG
TAAAATATGGCGCACTTCTAAGCCTTGTGCGACTCTCTTTTGCTAGAAGT
TGAATCCTACAAGGGGGTCTCCATGGACACGTCGTATACGTGATGAGTGT
TCTCACTATCGTGCTGGTTTATTGTTCGTTATTCTCCCACACATTGGTCT
GATAGCTCAGACCCGCAGTCACAAAACTAACATCGTGGAAATAGGTATGC
TTTCTACAGCTGGGTAGTAGAGATACATCGCGTATGCGGCGTGGGTTTTG
TAGTGAGCATGTATGTCTGAAAAAAGGCGGGAAACTGGCCCCGTGCCGGG
TGCCTCTTTATTGATTAAATTTCGTTTATGAGTGTACAGCTGAAATTAAA
AAACGAGCTGCATAATCTTAACATGGATATAATCGAGATAATATATAAGC
ATCAGAGCTGCAGTTCTGTAGTCCAACTAACGGTGAAAGTGTTGACTTGC
AAGTGAGAATCTCGGTGAGTGAAATGGAGGATTTTTCGTCTTCAGGGCGT
CAGCCGTTCATATGAAAATTATTTCATTTTTCACCTACATAACACATGCG
AGTGATCTACTAGTAGTAGTATTCGTGCCTGGTAGACGAGGTGCGAGAAG
TCCTGGTCATTGGCCGTGATGGGGTCAAAGCGTAAGTGATAGGAACAAGA
TCCTGTCGATCCACCAAGCAGAAGGCCCACATATCCGTCAAGTCCATTCG
AAAGTCGATTCACCTGATCGGCATGGGTAAGTGGACCTAGATGAGTTGTA
GGAGTGATGAAGGAGAAAGCACGTGCCCCCCCTCCCTGGTTGGGATCAGA
AACGGATTATAAGGCCTGTATCCCACGGACCTACGCCCGAACGGGTAGGG
TAGCTCGTGTACTAAGCATGACTCGAAGTCTAGTCAGAGGTTTTTAGTAG
GTGAAAATCCCACACTGCCTACCTGGTTCTTAGCCGAACCGGGGTGGCGC
CTACCCCGCAGAGGAAACTCTGTTCTGTTAACGGAAGTGTAGACATGTCC
GGGTGAATGCCTGGATATGGAAGCAGCGGAAAAGGTTTTTACCTTAGCCT
TCCGGGGGTTAAAAAAAAGGCCTGTATCCCAATGCTGCGAGATTTGTGCC
CCCTGTTTAGGCATAACCTTCTAACAAGCGCAAACCTCGTCTGAAATAAG
CATTACGCCCACCGTAAGCAAAAATATTGTATCGACTCTTCTTAAGTCAG
CATGTCTAACTCTACATGCTACCATTTAGCATTACTTGAAAGTGACTTGG
CACCACTTAAAGATTACTTCGCATGACTACGTAGAAATGACTTCATATAT
CTAAGAGGTGACTGAGCAACGTGGAATTTTTTTTTGCAGCCAACAGCAAG
GTTTAGGGTTGTTACTGCCTCGATCAGCTCATCCCCCGATACACTTGCTA
TACCATATATTTAGTACAATTCGTAAGTGTCTTAGTCCCAATTTAGTCCC
TCTTTCTCCCATACGCACACGCACGCACGCCCTCCCGTCGACCCTTGTTT
TATTAGAGGTGCCAGCTCCGCGGTTGCAACAAAGATGTGTACTTCGACCA
CGAAACTGGGCGCGTCCACGACTTCTGCTCTCGCCGACACGCCGACATGG
CCATGGCCAGAAGGGAGTGGCCTCTCGAGGACTCTAAGGGCCGTAAAGAA
TGCAAGCTTTCAGGTTGCAGGGAGCTCGTCTACCGCGACCCCGTGTCTGG
CGAGGTACACGCAAAAGAATATTGTAGAGTACGCCGTCATCGAACCTTCC
GTCAGAAGATTTCCTGTTTTTCTTTTTTTTGTTGACCTTTAGGTGTCCGA
TTAGGCTCTTCACAGAGGCTGTGTCGGAACCAAAAATGTGAAGCTGACTA
CAAATGTCGAGCGTGCTGCAGTAGTTATGTGCAGGAGAATCATATGTAAT
TTTTTTGCCTGTGCTCCATGTATCGTCTATGCTGTACGTGCCGTCTGACA
ACATGGACGAGTCTCTTTCCCTTTGCTCAATATCGTGTCAGGAGTATACC
TTACTGGTTTCCCCTGTTGATTTCAGGTTAGGATCAGGTACAGATTTTAT
TATAGACCAGAGTAAATATGGTGAACTTTGCACAAACACGTGCTCCAGGT
CAGGCTTTGAAACAAGTGTCAACTTTATAACTCATTCCGAATATTCCACG
AACATCTGTTCAAAGCTGACCGCCCTTTCAAAACGTGATGCATTGTTAGC
TATCTACATAATCTACATGGTTTAAAACGGCCTAACCAAAACGTTGTCAG
AACGCCGAACATACGGTAAAACATGCTCTTTTCTTGATGCAAACCTCTAG
GAGATCTGTTTGCGAACATGTAGATCTGGTTTCGTTCTGTCGTACTCACT
TACGAAAATCTGTAGGCGAAGTTGTTTAATGGAGATTTATTGAACCAGCA
AAATCAGTCGCGGCTCCGAAGCACAATTTGCAAAACGCCGCATTTTTGCT
GCGAATTTCTTCCCTTTCCTTGGGGGGTCTTTTTCCAGTTTGCCTGGCGC
ACTTTCTTGTCATAAATCATTACCGTTTCCGACGTCGGCCCTTTACGAGA
GCGAGGCCTGTGCCAACCGCGAACGTGTCGAAGAGAAACGGTGTATGTAC
GGTATTGGGGGTAACATGCTCGTAATCAATTTTCCTGTCGAGGAACTTGA
CTTGCTAAGACCAATCGCGATTCAGAACTCTAGGGTATCAAAATATGGTA
AAAACAAATGAAAACACTTGCTGCTGCTGCTGCTGCTGCTGCTCTTTTTG
ACATTATATCTCGCAGGACCGCCCCCCCCCCCCAACGCATATTGATTCGG
TACGGTAGAAACCCACGGCTTTGCTCGAAGAGGAAGCCGACAGCCTCCAT
GATCGCTACTTATGTTGCCGATTTTTTTCTTACTGCAGAACGTAACAGAC
AACCCTGGATCCTTCCATTTCCTTTTGCGCTTGACTCGAGACTCTTTCCT
CGGTCGTGGTTTCTTGCAGGAATCGGACTATTGCAGCAACCGCCATGTTG
TGGCCGGAAGGGCCCAGCAATCTCGTCAGTGCGTGAGACCCGGTTGTGAA
AGGTGGGAATTTGGGTCTTTCCCACCCCCCCCTGTTGATCTAATTTTGCT
GATGAGTGCACACAACTGAAGTTTGAGGTTACCTGCATAACCTCAACAAG
GGTATGGTGGAGATATTTGCAAGGGTTATAGTTTATTACCGCCTCCTGGG
GATGATTTCACAGTCTTCAGTACGCGTTCATTATGTTGGGGGTTGTGTAG
CTTCTGTTTAAAGCTGCATACGCCAAGCCGCCAACTGGATATACTGATGA
AAGGTGACGTTGAGCGGTCTGCAAATCAATTCATTTTGAGCATGGAACGG
TGCCGTACGATATGTACGTGCAAAAGGTCCAGATTGCTGGAAGTATGTCT
GTCAGTACGCCGCGAGAAAGTAGTGGTGTTTCAGGAAGAACACAAAGCAG
AAGAACGAGACAAAACAAAAAACAGTTGGTGGCGGCACCACTTTCTCTCT
CTATCTCTATCCTCTCTTTGCCACGAACGAACACCTCACGAAGAAACGTT
TCTGTACATGCGTATTTAGTGCTTTTCTGCGAACCCTAAGAATATCAAGC
TTTTGCCGCAGTTTCTTCTTAAGTCTGCTATAGCTATAGACCCAACACGC
AAGAATAGGGGAAAACAAACACACATTTTGAGTCGTTAAACTCAACCGAA
ACGCAAGACCAAAAGCTGTTGGAACTACTCAATCTTAAGCTGTTTTGCTA
AATTTATAGAGTTAACGCTCTTGTGTCCGAAACTAACCTCATAGAACACA
TGTACGTGTCTGGTTCTACGCCCGCGCTCTTGTACCGGACCGGACCGGAT
CTCCGATTCCCACACCTTGCCTCCGATAGAACAGCGTGGATCGACGTGAA
CTCGGGCGATCCATTCGACTACTGCGGGATCAGATGCGCCCGAGCTACAG
GAAAGGGCGATCTCGCCGGGTCGTCGCAGTGCAGTCTACCGGGTTGCGTT
GAGGCTACCCTGATTGACCAAGTGAACGGGCAGGACCTAGGGTTCTGCTG
CGAGGAACATCGCTTTCGCGCGACTCGGCGTGACCTGGTGCGTTGGGGAG
AGCTGAAGACCCCTGCCTTACTCGGGTCGCCAATTTTTTTTCTACCCGTT
ACTGTAATTTTGCTGATAAGTGTATACAACTACAGATTAAAGTCAGCTGC
TTAACCTCAACAGCGGTATATCTCACCAGATGGATTTATGTCAAGAAATC
GTATGTCTCGGGTCGGTGAGATACTCTTTGCACACTTTTTTGCGCTATTT
TCCTTTCTTGTTTTTATTTTCCCCCGAAAATGTTTGGGACTAACTCGTGG
GTTTTTTTGCTAACTTTGCGGCTTTCTCCAGTCAGTGAAATGTAGGAGGC
ATTGTAATACGACAGAAAAATGAAGTGATGCACGTGTGGTGTGTGCCGAT
TTTTTCCCCTATTTTCTTTTGGTTTTGTTTTGTACATGTTTAGGCCCCAA
TCACGGAGCCCTTCGTGGATCGTACGTTTAGAGGAGGCACCACAAGCGCG
ACAGACTTTCGGCTTAGCGTCCTCACGAACCGTCATGCAGATCACCAATC
TGTCAAAGAGCAATTCAAGAAGAAATGGATCAAGGCCGAGCCTGCCAGCG
GGGTTTCGGTGCTGAGGATCTTCAAGGTTGAGGTGAGAGGGAAGAAGAGG
CATCGTGCATAGTTATCTGTATGACGGGGGGGGGGAGTCTGGGCGTAGTT
GGTGAGTAAAACCTTCACCCCCCGGACGACCACGACTATTGACGGCTATG
TAAAGAATTAGTCTCCTGATTTCAAGAAGCTCCTTTATTCAGTGTGCTAC
GGGCCATCGAGGACTGTTCCGAATACTAGTAAAACGAAATAACAGAGGTG
AATGTTTTAATCTATTTGCCCGCACATTGTGACACTCAGGTTATTATTTT
TTTAGTAATCGCACGTTGTCGTAGTCCTCCGGGGGATGAAAACCTTGACC
CTTTTATCAAATAATGCCACTGTTTTTTGTTTTTTTGTGTTTTTCCCGCA
AGGTTTGCTTTGTTTTTGTCATGTCTCTAGAATGGTGGTTTCGAGGACCT
AGTAGTACTCAATACTTCTAAATGACGATTTTAAAGGTGAAACAGTATAC
AAGTACCCGGGGTGATTTAGTCGTGAAGATCTCAAGTGAGATAGGAGCGC
AGCAAGGGTTACGCATAGCCGCATATGCGCAGTGCCCTGGGAAATGAAGC
AGGAATGTTGCCTTCCGTACGGGTTGAAGAGAACGATACGAACGGGAGGG
TTGAGGATATTAAATTTTCTTCTTTTTTTTCTCAATATAATATTGCAGAC
CACCCCTCTGTTGGCGATACTAAGGTGGTGTATAGTATATCCATTCTCAG
GAAGATACAGATTTTGCTCTTTTTCATTTTTTGCTAATACCAATATTACC
CGAACTCATGTCAAACCGAGTATAGCCATGTAAGTGAGGCATGAAGAAAG
AGAATGAACAGATGCGGTTGTTGTGCGACGTGCTATTTATTTCCCTTGCT
CGCAGTTGCAGTATCACTTCATAAAACACGATCCCAGTGTTTTTCCTTGA
AGACATCCGGGCATATGGGGCGGCAATCTGTCAACCCCCGCGTCTTTCAT
GCAGGCTTTGGCTCGTTGCCGAAGGGACCAACCAGCCCGGGGTCGGGTTG
ATACCGGGCACCTTTCATGAACCGTGTCTCACAGGACCGTATTTTACAAG
CGTTGTCGGCCTATTCTCCATTCTATTTTACAGATTAACAAAGAATTTGG
TTGCAGATCACTTTATCTATAACCGCGGGAAGTCGCTTACGCTGAACACT
TCGCTCGGAACGTGTCATCACCTGGCCAAAACTGAAAAATTAACTATTCG
GTGATGTAATCACCGCGGCAGGTGCCAGCGGATATTCGCAAGAAGACCAA
GAGGTACCAAGAGATCGTCACTAACGTCCGCCGGCGCTTTCACGGCACAT
CGTGCTCGGACGCCTGCAATTTCTTCGTGGACCTGCAGGTGGGTAGGTTT
GTATTTCACTAGGTAACTCCGTTTGACAACTGATTGAATTTAATTTCATC
TTCGTCGGTCTGTGTTGTATATGTAAATCTACAGTATGACCCATTGCACT
CTTGCGTTGTAATTCTTCTGTTAACGCTGTAGGTCGAGTCTACCTCACCA
CCTACTTTGGCTTAATACAACGTGGCCGCTGCGAATGCCATAGGTTGGAA
GCTGTCTGCACATGCCCTGAAACCCCGCATGGAGACGCTTGGGCACATTT
TGGTGGTGTTAAATGCTATGGTAACGATGATTGCTATTTGAATATAGCGG
GGGTGGAGAAAGTAGCAATAACCGAATTAACCTTTTGGTTCCTATAAAAA
TACGAATGTGTTCACGGTAGGAACAACCTTTTTTCAGGAAGCCAAACGCC
GAATTACCGATCACGTCATAAATCGTGCTGTCATGTTCCGACTGCGACGA
CTGTGTCGCGCCGCCAGCTGCTGTGTCTGTTGGTACCGTTATGCAGTAGT
GGACGCCATACACGCAGCGGCTCTCGCTCGCTGGGGAACTCTCTGGAATG
TTGGTGCCTGCCAATCTGTCTCCCTCTCTCTTTCGTTGTCGCTGTTATCC
CATCATCACCGGGCTGATGTGTGTACATGATGCTGTGGTAGTACACCAAC
TGTTGCATGTATTCTATTCTAGTATATTTTCCTTCCGTAGCCGCGCGCAT
CTCTACTTACTGTACCATACAGTTTGCGCTGTCCAGCTGGCTACCACCGC
TCGATGGAACCAATTTATGTGGCACTGCAGTCTGTCGGCTGTACTCAACT
TTCAAGCACATGGCGTTGCAGCTGTAGCAAGCCGGCCGTGAACGTGCAAG
GGTTGAAATGAAAATTGTCGCTTTGACCACTTTCGCTCTTATGAGTCGCT
GAGTTTTTTCGCGGTTCAGTTCTCATTCATGCCCTACAGGTATATCCATC
TGGTGGTACACCGGTATGGTGTCATCCCCGCCGAAACACGTTTATTCTGT
CTCAAATCGTTACCCCTCATCTTGAAACATCGGACCGTGAGATTTCGCCT
GTCACAAAATTACGCTACAGGCTCCCAGGAGTCAAACGGTCAAGAGCTAT
TTTTTATTTTTAAAATGTAATGATGCAGCGCAGATCGCAACCCCTCCCCA
TGCGCGCGTGAACGTTCCTGCCTCCCCCCGCACACACGAGCTTTTCAATA
TGCCATGTGTTGAAAGGGAAAAAATCGCCCTTTTGTAATGTCTGATATAC
CAAAAGACTCAATATCGCCCTTCTATCGTGGTTGATGGATGTTGGATGTT
GGATGCCCGAACGATTTTTTATCTCCCCGCAATTGAACGAATAGGGTGGA
CCGTGCGGAGAGCAAATGTGCGCCGTGTGCAACATCTGCACGCACGGCTT
CAAGGTCAGTTGCGCCGGCCGCACAGCCCAGCGCGCCAAGTTTGACCTAC
GATTCGGAGAGGGGCTTTACTTCAGCAGCGTGTCGGGGAAGGCGAACGAC
TACGCGGAACTTTCCGAGAAGGTTCGCTTGGTTATGTTTGTGTTCGTTTC
TTCCTGTTTTTCTTGTTTTTTTCCGAACTTTGTTTTTGCGATGACTTTTC
TCGTTTGGCTAAGGTCGTGGGGGGAGGGGGGAGGGAAGGCAGGGCATAGA
CAGAAAATGAACACAAAATCACCCTACTGTAGAATCCGATTTGTCTCATT
GAGTGACAATTATTGAGTGACAAAACATAAGTTGACTGGACAGTTACAAT
GCCAAGAGGAGATCACCGGCGCCGCCTGACGAGCCCTGCGAAAGCGGAAT
CACGGTGAACAATGACACGAGTATTCGAGCTCGCGCTCTCTGCATGTGTT
CGTGGGTTATATTGGTGCCGCGTCCGCACGTAAACTCTGGTTGACAAAAT
AACCCCGGTCATTTGCACGTATTTATTACAATAGTATGTGCAAAATGTCG
CAAATACCATCAGCACTACAATGGATTGTCCCTTGCGCAGATGAAAATTC
AATCACTGAGTGCTGTCCTACCGTTCGCTGCTGAAAAACACCCCGAATCA
TGAATAGTCTGGAATGCTGCATTTGTATGTTCACATGTACATTCGTATTA
AAACGTTCGTTTGTAAGCAGATCACTCGTCGAAATTAAAGGCTGCGGCGT
GAAGATCGCATGTTGAACTCGTCACAATTGATGGGAAAAAATGCGCTTGC
ACACCTGGTCGCACTTTCGCACCCACTAAAGTTGGGCTTCTCGTTGCGAC
CTACCTCATGGGCGAAGCTGTATCGCGTTCAAGGGGTCATTGTGGTACAG
GCACACACACACTCACATGGTGTGCTCAGTAATATGCTTAATAAAGACTG
ACTGTAGTACATAACGTAACTTTTTATCTCTGTACGCCGCAATTTCACTC
TACCCCGTGCCCCGATTGGTTTTTCTGATTGTGTTGGTAAGTAGTACGGA
ATTGACGTTTAAGGCCAGCGGCGTTACCTCAACAGGGGCACGAAGGAGTT
GTTATATGTATTTTTAGAGCCTACTTATTGTGGCAAATGGGTTGATTCGT
GATGGCTACAAGCTGGGCCGGCCAAGAAACGAACAATTCGTCAGATGGTC
GTATCTCTGCTTCTGCTTTGTTGTTTCTCAAACCACAGACACCACTGCGA
TCGTTGAACTGTCACGAAGAAGCTAGAACTCCTCAGATGCTGTGTTGAGT
CTGTTCTGCTTCTGAAGGGTTCTTGACCAATCACAGCACGCTATGATGCG
GCGTGATTACAGGATGAAACCGTCATTTTTCTGCATTTTTAACTTTTTTT
TGCGGCGCAATCAAATTTTGTGGTCACGCACAGCAGCATGAATACATGAA
CACCACAGCCGCGTCGCCTTCGTAAGCGCGCTGTGTCGTGACCTTATACA
AGTACACTTCAACGCCTTGAGCAAGTACAAGTACAATGTGGTTGAACCAG
GGTGGCGCCTAAACCGCAGAGGAATAAATAACTCTGATCCATTAAAGGAA
ATGAAGACACTCAGAAATCTTCCGAAGAGTGGAAGTAGCGGAAAGGGTTT
TTTGCCTGACCTTCTGGGGGTTAAAAAAAAAAGAAGAAAAAAGTACAAGG
TGGTACCAAGTTACTGCACGCACATAGATGGGCAACATAAACTGGGGCTT
TCTCACAGTTCTTCATGCCGATTCAACACATGTAGTTTTCCTACCGACAA
CGGTGCTTTAGAAATCTGGCCATGCTGCGCTCACTTTTTGGCGTTCGGAC
CTGAAATTTTGACACGTGATTTGTAGCGAGCTCACCAAAACACTCATATT
TGGTCACAAAAAATGAGCGCAGCACAACGATATTGCTTATTTCATGGTCT
CTTGGCCGGCCCAGCTTGTACTTGGTGGATAAACTTTCTTGGGGATTTTT
TTCTGTTGGAAGTTCACGTGGAAGCCATTTCATATCATATCACCTTCTTG
ATGAAGGCCGTGGCCCATGTCGTGCCAGGTCGAAGAGGTGCTAGAAGTCC
TGGGGCTTGGTCACGATGAGGCCAAGATACCACCCGCCCCTCTACGAATC
CCTCGTGTTTTCTGGTGTTTCCCGTTGTATTTCACTCTTGTTTTGTTTGC
TTTCTCGCACAGACGGACAAGAAGGGTCGGCAAGTCCGGTGCATGTTCGT
GGCGAGCGTGGCCGTGGGCAACGCCTTCGTGACGCACGAGGGCAAGCTCC
CGGTTGAGCGTTGTCCCCCACAAGGCTATGACTCGGTCATCGGAGAGGTG
AGGGGGGGAAACCCAGGAGCAACGATGTCGGGGATGAAGGTGGTTTATCC
CTCTCGGCTGACCGAGTTAATTTGATACAGTCCCGTCCACGGCAGTGTAA
TATTTTTGCAGATAGAGGAGACGTTGTTTCAGACTAGTTGTTCGGTGCTG
TTTCCCCGCCGCCTATCTTTATGGTCCTCTTTCCACTGTCGTATATAAAA
TACCGAGTCTCTAGTTTTCTTCACATTCATTTGGTCTCCCTATCGGTGAT
TTCTGCCGGGTGTTCGTTGGCTGCTACCTCGTATTTTGACTTGATTAGAA
AAAAATGTCGTCCTGCGTGGTGAGCTCTTGAGTATTGGCCTGCCAGTTTC
TCACGGTTATCGCTGGAGAGAGTCTATTTATCTAATTCTAGCTCCTTTTC
TCAAGTGTGGCGATCGTGCGCCGCTGTTCCTTTCAAGATTGTCATGGGTG
TATATCGTGCTGGTCTGGTTTACATCGGTTGTTTTTGACTTTAGTGGGTG
TGAGCGGCCAATTTATTCGCCCTCATGTTCAATGCTACCAGCCTCATCGC
TCACTTAGAGCGCCGGAACTTTTACTCCAACGGGGTTCCCTGCGTCTACT
GTTGTTGACGGGTTCAATCTCAGGCGTCCATCAGCTGAGCGCGTGCAAGT
GTACCCGGTTAAACTTTAAGCTATCTCGTCTCCAGAGACCCAGTTCGGAC
CCGGAGTTTGTCGGCAGGTTCGCGTTCTCAACTCGCCAGTGAAATCCAAA
TATTTCGTTTTTCAGGTTGTGAGCCATTGTGTAGGGGGTCCCGTTTTCCT
CATCTCGTACTAGGATAAGGCGTATGACGAGTAGCAAATCGAAATATATG
TACAGTACAACCCGCCGCGACAGGGAAGAAGGTGCAATTATTCAAATATC
ATCGAATATGCGTCTATGCAATTTATTTCAATAAATTAATATGACCGGTA
AAGCAAATTGTAGTATTGTAGTACAAAATAATTATACGCTTGATCAAAAT
GTATACAGCACAAAGCAGCATTAACATTTTTTGGCAGCAAGTACACACAA
CCAGACGTGATCCCAATTTTTACAACTCCACCCCAAGAGCACGGCTCTGG
TGCCGAACACACGGGTCAGAAAAGCCAGAAAATTACTCTGGGAGATGACG
TCTTGATGAGATGCTGTCTACTGACTAACATGGTGTGGTTCTGATAATAC
TGAACCAACACTTCACTGCAGTCTTCTGCAGATGTTGGTATTGCACTGTT
CTGTATATACCCTAGAAGTCGTCATTAGTGAGGGCACTAGAGCTGGGGGA
AGATGCTTAGTCTGGATATAGTAATATTCTACTATCCTCACTCCCCGCCC
CCGCTCTCCCCCGCCTGTCTCCGGGTCTTCATTTGGCTGTAAGGTGGGCC
CAAATCTCAACTACGATGAGGTGGTGGTGTACAAAGAGGAGGCTGCGCTA
CCAACTCACCTCATCGTGTATGCTTTCAACCCCTGACGACCCACAACAGC
CTTTCTGCCCATATGGGAATTTTGTACAATAGTCACCTTTGTGTACATCG
TCAAATGCACACGGGGGCCAAAAGAGGACGGCAGCGAGGAGGTGGAGAGT
CCGGCGCGCCGATAAAAAAATATATCTGATGTGGATTCGCATGAGCGTGA
TTGATTTGCGCGATGCCTTTAGTCGTTGGGATACTTTTCCACAGCGGGAC
AAAAATATGTTGATGGGCCTTGCGACTTTTGGTGGTCAATGATCGCACGC
ACATACCAGTTACGTTACGTTTCGTTTCGTTTTTGTTGTGGTTGGATGTC
TGCTTTTATAAAGATAGGGGGGGTTGGATTATTATCGTATTTTGGAGCTT
TGGGGAATTGTGCAACCAGGGGAGGATTTCGGGTTGGTTTGGCAGTAGGA
AGCTTATGATTGTACCCTATATTTGGAGACAAAGCAACGCCTTTGGGTAC
TATTGTACTGTAGAAAATTGATATTATTGAGCCTGTGTAGTAGTGTGTGT
TACTTTCTGAAACGTTCGAGTGTAGCTCTAGAGCTCGAGCTTCCCGTATA
GTCTAGGGTTCATTACAAGTATGTGGTGCTAAAAGGTGACGATATTTCGA
CGCTATGGCGGTGATATGAGGAATTTTCGATTGCATTGGGTGGTTCACCG
TGCGAGCTCGCGCGCTTGGTAGTACGTATTTTAATCACAAGGTAATCGAG
CGCTAGGTGCCCTCGGGGCTTGGCTCAAACATATTTTTGTTGGCCAAAAC
GGTGGAGATCGTGAACTGACTGAACGTGTTCGCCGGAGACGGCGGGAACG
ATGTCATCGTAATTTTCACAAGAGCTCAAGATGGACGGTCTTCATTTGTA
CTGGTAGTGTGGAAGAGTCATCTCTTCAAATTCTCTCGTTTATTTTTTCA
CGTCTGGGGGAAATTATGGTTCGGACGTTACAATGTTTGTCAGCGTCTTT
GCCCTCCAACACTTGATTGAGGATATTCGTGAAAAAAATACCGAGGTTGG
ATTCTCCCCTGTTTTGGGGGCAATACAACCCGGAAAGTGCTTTCATTGGA
TGCACTACAGTTAGCTAACACCACGATGTATTCCTGAGGCAACACAACGA
GCGGTCATGTGTTCCACCTGTTGGGCGATGTAGTCCGACACGAATTTCGA
CTGGATGAAACGATTGGCATTGTCATTCCTTCAGGGTATGTGTTGTAGCA
ACAGAAGTGACGTTGGTATAAAATTTGCGCGGTAAGGTGCTGGTTCATAA
ATTGATTGTTGGCTCTCGACATGTGTTGTGCTCTCACGTGTTGAATATCT
ACAGCAATAAGACGAGTTGAGAGTTGTGTGTAATGTCGTCCAGTGCATTG
GGTCTGAAAAGTCTTGGTGGGTATTGTGTAATGGATGGATTCCGCTATTT
GTTTTGTTACACTCCAACAGGGGTTGTGCTTGGAGGTGCTTGTTCACTGC
CATTCGTGCCAGTGGTGAAATTAATGCATCCTGGGTAAAATACTTCGGGC
CAGATCAGGAGGGAAGTCCCAGAAGTGCGATTACTGAGACTGGAAGTCCA
TGGTCAATATAATTCGATCGAAGTTCTTCAAGCAGGTCGGGTAACAAGCA
ATCGGCATCAGCCTCCGCAACTCGAGAAATCTAGCGTGATGGTCACAGGG
GTGCGCGCGGTCCCGAGCGCATACGACTGGTATAAAAAGAGGATTGATAT
TTCAACGGGACGGAGTAGAACGGAGAATAGTCTCCTTGAGTGAGGTGGAA
GCCAATAAACAACCGATCATCCTTATTGAGGATAAAATAGCTTTTGTTTA
TCCGAAAAAGTATTATTGCTGAATCATGCTAAGCAGTCCAAGGCTGCGCG
AAAGCGGATAACGTCAGCATTCATGGGCCAATTTTTAGTTTTTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5221:2..13745-

>mRNA_H-paniculata_contig5221.12589.1 ID=mRNA_H-paniculata_contig5221.12589.1|Name=mRNA_H-paniculata_contig5221.12589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2706bp|location=Sequence derived from alignment at H-paniculata_contig5221:2..13745- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCACCACTTCATGCTGCATCCCCGAGTGCACCAGGCCCCGCTTCGA
GAGAGAGGGCATAGTTCACGATTTTTGCGGGCGGACTCATGCGAGCGAGG
CTTTATCAAGGGGACTCATTGACAATCTCCGTCCTCCTCATGGCGTATGC
CACATGGCCACCACTTCATGCTGCATCCCCGAGTGCACCAGGCCCCGCTT
CGAGAGAGAGGGCATAGTTCACGATTTTTGCGGGCGGACTCATGCGAGCG
AGGCTTTATCAAGGGGACTCATTGACAATCTCCGTCCTCCTCATGGCGTA
TGCCACAGGTGCCAGCTCCGCGGTTGCAACAAAGATGTGTACTTCGACCA
CGAAACTGGGCGCGTCCACGACTTCTGCTCTCGCCGACACGCCGACATGG
CCATGGCCAGAAGGGAGTGGCCTCTCGAGGACTCTAAGGGCCGTAAAGAA
TGCAAGCTTTCAGGTTGCAGGGAGCTCGTCTACCGCGACCCCGTGTCTGG
CGAGAGGTGCCAGCTCCGCGGTTGCAACAAAGATGTGTACTTCGACCACG
AAACTGGGCGCGTCCACGACTTCTGCTCTCGCCGACACGCCGACATGGCC
ATGGCCAGAAGGGAGTGGCCTCTCGAGGACTCTAAGGGCCGTAAAGAATG
CAAGCTTTCAGGTTGCAGGGAGCTCGTCTACCGCGACCCCGTGTCTGGCG
AGGAATCGGACTATTGCAGCAACCGCCATGTTGTGGCCGGAAGGGCCCAG
CAATCTCGTCAGTGCGTGAGACCCGGTTGTGAAAGGAATCGGACTATTGC
AGCAACCGCCATGTTGTGGCCGGAAGGGCCCAGCAATCTCGTCAGTGCGT
GAGACCCGGTTGTGAAAGAACAGCGTGGATCGACGTGAACTCGGGCGATC
CATTCGACTACTGCGGGATCAGATGCGCCCGAGCTACAGGAAAGGGCGAT
CTCGCCGGGTCGTCGCAGTGCAGTCTACCGGGTTGCGTTGAGGCTACCCT
GATTGACCAAGTGAACGGGCAGGACCTAGGGTTCTGCTGCGAGGAACATC
GCTTTCGCGCGACTCGGCGTGACCTGAACAGCGTGGATCGACGTGAACTC
GGGCGATCCATTCGACTACTGCGGGATCAGATGCGCCCGAGCTACAGGAA
AGGGCGATCTCGCCGGGTCGTCGCAGTGCAGTCTACCGGGTTGCGTTGAG
GCTACCCTGATTGACCAAGTGAACGGGCAGGACCTAGGGTTCTGCTGCGA
GGAACATCGCTTTCGCGCGACTCGGCGTGACCTGGCCCCAATCACGGAGC
CCTTCGTGGATCGTACGTTTAGAGGAGGCACCACAAGCGCGACAGACTTT
CGGCTTAGCGTCCTCACGAACCGTCATGCAGATCACCAATCTGTCAAAGA
GCAATTCAAGAAGAAATGGATCAAGGCCGAGCCTGCCAGCGGGGTTTCGG
TGCTGAGGATCTTCAAGGTTGAGGCCCCAATCACGGAGCCCTTCGTGGAT
CGTACGTTTAGAGGAGGCACCACAAGCGCGACAGACTTTCGGCTTAGCGT
CCTCACGAACCGTCATGCAGATCACCAATCTGTCAAAGAGCAATTCAAGA
AGAAATGGATCAAGGCCGAGCCTGCCAGCGGGGTTTCGGTGCTGAGGATC
TTCAAGGTTGAGGTGCCAGCGGATATTCGCAAGAAGACCAAGAGGTACCA
AGAGATCGTCACTAACGTCCGCCGGCGCTTTCACGGCACATCGTGCTCGG
ACGCCTGCAATTTCTTCGTGGACCTGCAGGTGCCAGCGGATATTCGCAAG
AAGACCAAGAGGTACCAAGAGATCGTCACTAACGTCCGCCGGCGCTTTCA
CGGCACATCGTGCTCGGACGCCTGCAATTTCTTCGTGGACCTGCAGGGTG
GACCGTGCGGAGAGCAAATGTGCGCCGTGTGCAACATCTGCACGCACGGC
TTCAAGGTCAGTTGCGCCGGCCGCACAGCCCAGCGCGCCAAGTTTGACCT
ACGATTCGGAGAGGGGCTTTACTTCAGCAGCGTGTCGGGGAAGGCGAACG
ACTACGCGGAACTTTCCGAGAAGGGTGGACCGTGCGGAGAGCAAATGTGC
GCCGTGTGCAACATCTGCACGCACGGCTTCAAGGTCAGTTGCGCCGGCCG
CACAGCCCAGCGCGCCAAGTTTGACCTACGATTCGGAGAGGGGCTTTACT
TCAGCAGCGTGTCGGGGAAGGCGAACGACTACGCGGAACTTTCCGAGAAG
ACGGACAAGAAGGGTCGGCAAGTCCGGTGCATGTTCGTGGCGAGCGTGGC
CGTGGGCAACGCCTTCGTGACGCACGAGGGCAAGCTCCCGGTTGAGCGTT
GTCCCCCACAAGGCTATGACTCGGTCATCGGAGAGACGGACAAGAAGGGT
CGGCAAGTCCGGTGCATGTTCGTGGCGAGCGTGGCCGTGGGCAACGCCTT
CGTGACGCACGAGGGCAAGCTCCCGGTTGAGCGTTGTCCCCCACAAGGCT
ATGACTCGGTCATCGGAGAGGTGGGCCCAAATCTCAACTACGATGAGGTG
GTGGTGTACAAAGAGGAGGCTGCGCTACCAACTCACCTCATCGTGTATGC
TTTCAACCCCTGAGTGGGCCCAAATCTCAACTACGATGAGGTGGTGGTGT
ACAAAGAGGAGGCTGCGCTACCAACTCACCTCATCGTGTATGCTTTCAAC
CCCTGA
back to top