mRNA_H-paniculata_contig5215.12580.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5215.12580.1
Unique NamemRNA_H-paniculata_contig5215.12580.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5215.12580.1 vs. uniprot
Match: D7FPJ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPJ3_ECTSI)

HSP 1 Score: 387 bits (993), Expect = 5.560e-126
Identity = 196/219 (89.50%), Postives = 209/219 (95.43%), Query Frame = 1
Query:    1 NKAVEFSKLQICVDLFLFSAQYTDVATLANLSKFSAGQLFYYPAFSSLRDGEKFNADLTRVLTRATAFEAVMRVRATRGLRITNFYGNYFIRGTDLLALPNCTPDSVFAVEFGYDEQLLTASVISVQAALLYTTSCGERRIRVHNLAIPVEAVIQNVFESVNIDVLCNILAKQALEVALKSGLDTARGRIQQACVDIIRASRGGGYGSSPYMATGAQQQ 657
            NKAVEFSKLQICVDLFLFS+ Y+DVATL NL KF+AGQLFYYPAF++  DG KFNA+LTRVLTRATAFEAVMRVRATRGLRITNFYGNYFIRGTDLLALPNCTPDSVFAVEFGYDEQLLTASV+SVQAALLYTTSCGERRIRVHNLAIPVE V+QNVF+SV+IDVLCNILAKQALEV+LKSGLD+AR +IQQ CVDIIRASRGGGYGSSPYMA GAQQQ
Sbjct:  481 NKAVEFSKLQICVDLFLFSSGYSDVATLVNLPKFTAGQLFYYPAFNAQSDGVKFNAELTRVLTRATAFEAVMRVRATRGLRITNFYGNYFIRGTDLLALPNCTPDSVFAVEFGYDEQLLTASVVSVQAALLYTTSCGERRIRVHNLAIPVETVVQNVFDSVSIDVLCNILAKQALEVSLKSGLDSARSKIQQTCVDIIRASRGGGYGSSPYMAAGAQQQ 699          
BLAST of mRNA_H-paniculata_contig5215.12580.1 vs. uniprot
Match: A0A836CAX8_9STRA (Sec23/Sec24 trunk domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAX8_9STRA)

HSP 1 Score: 315 bits (807), Expect = 7.690e-99
Identity = 163/219 (74.43%), Postives = 182/219 (83.11%), Query Frame = 1
Query:    1 NKAVEFSKLQICVDLFLFSAQYTDVATLANLSKFSAGQLFYYPAFSSLRDGEKFNADLTRVLTRATAFEAVMRVRATRGLRITNFYGNYFIRGTDLLALPNCTPDSVFAVEFGYDEQLLTASVISVQAALLYTTSCGERRIRVHNLAIPVEAVIQNVFESVNIDVLCNILAKQALEVALKSGLDTARGRIQQACVDIIRASRGGGYGSSPYMATGAQQQ 657
            NKA +FSKLQICVDLFL  AQY DVATL  L   + GQLFYYP F+  RDG K  A+LTRVLTRATAFEAVMRVRATRGLR++NFYGNYFIRGTDLLALPNCTPDSVF VEF YDEQ+L ASVIS+QAALLYTTS GERRIRVHN+A+PV+ V Q +F SV+ID LCN++AKQAL+VAL SGLD AR RIQ  CV+I+RA+RGGGYG       GAQQQ
Sbjct:  441 NKAQDFSKLQICVDLFLCGAQYMDVATLFQLPSKTGGQLFYYPGFNVQRDGVKLQAELTRVLTRATAFEAVMRVRATRGLRMSNFYGNYFIRGTDLLALPNCTPDSVFGVEFAYDEQVLVASVISIQAALLYTTSTGERRIRVHNVALPVKTVCQEIFNSVSIDALCNLVAKQALDVALTSGLDAARARIQDVCVEILRATRGGGYGGYG----GAQQQ 655          
BLAST of mRNA_H-paniculata_contig5215.12580.1 vs. uniprot
Match: A0A7S2V2R8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2R8_9STRA)

HSP 1 Score: 299 bits (765), Expect = 1.180e-97
Identity = 155/219 (70.78%), Postives = 181/219 (82.65%), Query Frame = 1
Query:    1 NKAVEFSKLQICVDLFLFSAQYTDVATLANLSKFSAGQLFYYPAFSSLRDGEKFNADLTRVLTRATAFEAVMRVRATRGLRITNFYGNYFIRGTDLLALPNCTPDSVFAVEFGYDEQLLTASVISVQAALLYTTSCGERRIRVHNLAIPVEAVIQNVFESVNIDVLCNILAKQALEVALKSGLDTARGRIQQACVDIIRASRGGGYGSSPYMATGAQQQ 657
             KA+EFS+ QICVDLFLFS  YTDVATL+ L K++AG+ ++YP FSS RDGEKF  +LTRVLT+  AFEAVMRVRATRGLRITNFYGNYF+RGTDLLALPNCTPD+ F +EF Y+EQLLTA +IS+QAALLYT+S GERRIRVHNLAIPV  VIQ V  SV IDV+ N+LAK ALEVA K+G D AR RIQQAC+D++RA+R G  G+  Y   G+QQQ
Sbjct:   44 TKAIEFSRYQICVDLFLFSEHYTDVATLSQLPKYTAGRCYHYPRFSSQRDGEKFVTELTRVLTQPIAFEAVMRVRATRGLRITNFYGNYFVRGTDLLALPNCTPDTCFGIEFAYEEQLLTAQIISIQAALLYTSSSGERRIRVHNLAIPVSQVIQEVVNSVAIDVVINVLAKSALEVAWKTGFDHARTRIQQACLDMVRANRVGA-GAGAY---GSQQQ 258          
BLAST of mRNA_H-paniculata_contig5215.12580.1 vs. uniprot
Match: A0A7S4D505_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D505_HETAK)

HSP 1 Score: 280 bits (717), Expect = 4.230e-87
Identity = 145/218 (66.51%), Postives = 173/218 (79.36%), Query Frame = 1
Query:    1 NKAVEFSKLQICVDLFLFSAQYTDVATLANLSKFSAGQLFYYPAFSSLRDGEKFNADLTRVLTRATAFEAVMRVRATRGLRITNFYGNYFIRGTDLLALPNCTPDSVFAVEFGYDEQLLTASVISVQAALLYTTSCGERRIRVHNLAIPVEAVIQNVFESVNIDVLCNILAKQALEVALKSGLDTARGRIQQACVDIIRASRGGGYGSSPYMATGAQQ 654
             KAVEFS+LQI V+LFLF+AQY D+A L +L K++AG+ +YYPAF   RDG + +A+L R LTR   FEAVMRVRATRGLRITNFYGNYFIRG+DLLALPNC+P+  +A+E  Y+EQL+TA VISVQAALLYT+S GERRIRVHNLA+PV  +IQ    S+NIDVLCNI+AKQAL+VA K+GLD AR RI Q   DI+RA RGGG   + Y    AQQ
Sbjct:  290 TKAVEFSRLQITVELFLFAAQYADLAALQDLPKYTAGRTYYYPAFRPPRDGARLDAELARCLTRPVVFEAVMRVRATRGLRITNFYGNYFIRGSDLLALPNCSPEHAYALELAYEEQLMTAQVISVQAALLYTSSNGERRIRVHNLAVPVTTIIQEYINSINIDVLCNIMAKQALDVATKTGLDFARTRIFQNAADILRACRGGG-AQAAYGVQQAQQ 506          
BLAST of mRNA_H-paniculata_contig5215.12580.1 vs. uniprot
Match: A0A812VPB2_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VPB2_SYMMI)

HSP 1 Score: 261 bits (667), Expect = 8.450e-80
Identity = 134/221 (60.63%), Postives = 164/221 (74.21%), Query Frame = 1
Query:    1 NKAVEFSKLQICVDLFLFSAQYTDVATLANLSKFSAGQLFYYPAFSSLRDGEKFNADLTRVLTRATAFEAVMRVRATRGLRITNFYGNYFIRGTDLLALPNCTPDSVFAVEFGYDEQLLTASVISVQAALLYTTSCGERRIRVHNLAIPVEAVIQNVFESVNIDVLCNILAKQALEVALKSGLDTARGRIQQACVDIIRASRGGGYGSS---PYMATGAQQ 654
            N A+EFS+LQICVD FLFS QYTDVAT + LSK++AG  +YYP F   RDGEKF A+L R LTRA+AFEAVMRVRATRGLRI NFYG++FIRGTDLLALPNCT DSV+ ++F YDE  L+ + ++VQAALLYT S GERRIRVH + IPV   +  +    +ID   NI AKQA++ +LK GLD +R R+ Q CV+I+RA++ G   S     Y A G QQ
Sbjct:  365 NTAIEFSRLQICVDTFLFSGQYTDVATFSTLSKYTAGSTYYYPGFYGPRDGEKFEAELHRTLTRASAFEAVMRVRATRGLRIQNFYGSFFIRGTDLLALPNCTSDSVYTMDFAYDEPALSTTAVTVQAALLYTNSAGERRIRVHTMVIPVTQHLSEMLSLTDIDCAVNIAAKQAVDSSLKGGLDASRTRVHQNCVEILRAAKSGVQQSQMPGQYGAVGYQQ 585          
BLAST of mRNA_H-paniculata_contig5215.12580.1 vs. uniprot
Match: M4BN79_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BN79_HYAAE)

HSP 1 Score: 254 bits (648), Expect = 1.550e-79
Identity = 126/209 (60.29%), Postives = 160/209 (76.56%), Query Frame = 1
Query:    1 NKAVEFSKLQICVDLFLFSAQYTDVATLANLSKFSAGQLFYYPAFSSLRDGEKFNADLTRVLTRATAFEAVMRVRATRGLRITNFYGNYFIRGTDLLALPNCTPDSVFAVEFGYDEQLLTASVISVQAALLYTTSCGERRIRVHNLAIPVEAVIQNVFESVNIDVLCNILAKQALEVALKSGLDTARGRIQQACVDIIRASRGGG-YGS 624
              A++F + Q+ VDLFLFS+ YTD+A++ +LSK+SAGQ++YYPAF++ RDGEKF+ +L   L R TA+EAVMRVR T+G+R+ NFYGN+F+RG DLLALP C  DS FAVE  + + LLT+S ISVQA LLYT S GERRIRVH + IPV  +   +F  V+ D LCNI+AK ALEVALK+GLD+ R R+Q  CVDIIRA R  G YG+
Sbjct:   11 TNAIDFCRQQVSVDLFLFSSMYTDIASMGSLSKYSAGQVYYYPAFNAKRDGEKFSKELAHCLVRETAWEAVMRVRCTKGMRLANFYGNFFLRGPDLLALPTCNADSTFAVEITHSDALLTSSTISVQAGLLYTNSGGERRIRVHTVCIPVTKLFAELFRQVDQDALCNIMAKNALEVALKTGLDSGRSRLQAQCVDIIRAYRNSGTYGA 219          
BLAST of mRNA_H-paniculata_contig5215.12580.1 vs. uniprot
Match: A0A662XXV8_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXV8_9STRA)

HSP 1 Score: 248 bits (634), Expect = 2.070e-77
Identity = 122/209 (58.37%), Postives = 158/209 (75.60%), Query Frame = 1
Query:    1 NKAVEFSKLQICVDLFLFSAQYTDVATLANLSKFSAGQLFYYPAFSSLRDGEKFNADLTRVLTRATAFEAVMRVRATRGLRITNFYGNYFIRGTDLLALPNCTPDSVFAVEFGYDEQLLTASVISVQAALLYTTSCGERRIRVHNLAIPVEAVIQNVFESVNIDVLCNILAKQALEVALKSGLDTARGRIQQACVDIIRASRGGG-YGS 624
              A++F + Q+ VD+FLFS+ YTDVA++ +LSK+SAGQ++YYPAF++ RDGEKF+ +L   L R T++EAVMRVR T+G+R+ NFYGN+F+RG DLLALP C  DS FAVE  + + LLT+S ISVQA LLYT S GERRIRVH + IPV  +   +F  V+ D LCNI+AK ALE ALK+GLD+ R R+Q  C DI+RA R  G YG+
Sbjct:   10 TNAIDFCRQQVSVDMFLFSSMYTDVASIGSLSKYSAGQVYYYPAFNAERDGEKFSRELAHCLVRETSWEAVMRVRCTKGMRLANFYGNFFLRGPDLLALPTCNADSTFAVELTHSDALLTSSTISVQAGLLYTNSGGERRIRVHTVCIPVTKLFAELFRQVDQDALCNIMAKSALETALKTGLDSGRSRLQAQCADIVRAYRNSGAYGA 218          
BLAST of mRNA_H-paniculata_contig5215.12580.1 vs. uniprot
Match: A0A024TUF0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TUF0_9STRA)

HSP 1 Score: 260 bits (664), Expect = 3.040e-77
Identity = 130/220 (59.09%), Postives = 166/220 (75.45%), Query Frame = 1
Query:    1 NKAVEFSKLQICVDLFLFSAQYTDVATLANLSKFSAGQLFYYPAFSSLRDGEKFNADLTRVLTRATAFEAVMRVRATRGLRITNFYGNYFIRGTDLLALPNCTPDSVFAVEFGYDEQLLTASVISVQAALLYTTSCGERRIRVHNLAIPVEAVIQNVFESVNIDVLCNILAKQALEVALKSGLDTARGRIQQACVDIIRASR-GGGYGSSPYMATGAQQQ 657
              A+EF + Q+ VD FLFS QYTD A+L  +SK+SAGQ+FYYP F++ +DG+KF A+L   LTR T +EAVMRVR T+G+R+ NFYGN F+RG DLLALPNC  D+ FA+E  + + LLTASVIS+QAALLYTTSCGERRIRV  +A+PV  +   VF SV++D +CN++AK ALEVALK+GL+ AR ++QQ CVDI RA R  G YG +    +G Q Q
Sbjct:  606 KNAIEFCRQQVSVDTFLFSPQYTDYASLGAMSKYSAGQVFYYPGFTAAKDGDKFRAELAHTLTRETGWEAVMRVRCTKGMRLVNFYGNSFLRGPDLLALPNCHADAAFAIEIEHQDALLTASVISIQAALLYTTSCGERRIRVLTVAVPVTKLFAEVFRSVDVDAICNMIAKNALEVALKTGLEPARNKMQQVCVDIARAYRTSGAYGQNNPSNSGFQLQ 825          
BLAST of mRNA_H-paniculata_contig5215.12580.1 vs. uniprot
Match: W4GMY2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMY2_9STRA)

HSP 1 Score: 258 bits (660), Expect = 1.090e-76
Identity = 132/221 (59.73%), Postives = 168/221 (76.02%), Query Frame = 1
Query:    1 NKAVEFSKLQICVDLFLFSAQYTDVATLANLSKFSAGQLFYYPAFSSLRDGEKFNADLTRVLTRATAFEAVMRVRATRGLRITNFYGNYFIRGTDLLALPNCTPDSVFAVEFGYDEQLLTASVISVQAALLYTTSCGERRIRVHNLAIPVEAVIQNVFESVNIDVLCNILAKQALEVALKSGLDTARGRIQQACVDIIRASR-GGGYG-SSPYMATGAQQQ 657
              A+EF + Q+ VD FLFS QYTD A+L  +SK+SAGQ+F+YP F + +DG+KF+A+L   LTR T +E+VMRVR T+G+R+ NFYGN F+RG DLLALPNC  D+ FA+E  + + LLTASVIS+QAALLYTTSCGERRIRV  +AIPV  +   VF SV++D +CN++AK ALEVALKSGL+TAR ++Q  CVDI RA R  G YG ++P   TG Q Q
Sbjct:  602 KNAIEFCRQQVSVDTFLFSPQYTDYASLGAMSKYSAGQVFHYPGFVAAKDGDKFSAELAHTLTRETGWESVMRVRCTKGMRLVNFYGNSFLRGPDLLALPNCHADAAFAIEIEHQDALLTASVISIQAALLYTTSCGERRIRVLTVAIPVTKLFAEVFRSVDVDAICNMIAKNALEVALKSGLETARNKMQTVCVDIARAYRTSGAYGHNNPTNNTGYQLQ 822          
BLAST of mRNA_H-paniculata_contig5215.12580.1 vs. uniprot
Match: A0A1W0A274_9STRA (Transporter Sec24 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A274_9STRA)

HSP 1 Score: 254 bits (648), Expect = 2.130e-76
Identity = 128/220 (58.18%), Postives = 168/220 (76.36%), Query Frame = 1
Query:    1 NKAVEFSKLQICVDLFLFSAQYTDVATLANLSKFSAGQLFYYPAFSSLRDGEKFNADLTRVLTRATAFEAVMRVRATRGLRITNFYGNYFIRGTDLLALPNCTPDSVFAVEFGYDEQLLTASVISVQAALLYTTSCGERRIRVHNLAIPVEAVIQNVFESVNIDVLCNILAKQALEVALKSGLDTARGRIQQACVDIIRASR-GGGYGSSPYMATGAQQQ 657
              A+EF + Q+ VD FLFS QYTD A+L  LSK+SAG++F+YP FS+ +DGEKF+ +L   LTR T +EAVMRVR T+G+R++NFYGN F+RG DLLALPNC  D+ +A+E  +++ LLTASVI VQ+ALLYTTSCGERRIRVH +A+PV  +   VF SV++D +CN++AK ALEVALK+GL+ AR ++Q    DI RA R  G YG++P  +TG Q Q
Sbjct:  346 KNAIEFCRQQVSVDTFLFSPQYTDFASLGCLSKYSAGEVFFYPGFSAAKDGEKFSNELAHCLTRETGWEAVMRVRVTKGMRLSNFYGNSFLRGPDLLALPNCHRDAAYAIEIEHNDALLTASVICVQSALLYTTSCGERRIRVHTVAVPVTKLFAEVFRSVDVDAMCNLIAKNALEVALKTGLNAARNKLQAVASDIARAYRTSGAYGANP--STGYQLQ 563          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5215.12580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPJ3_ECTSI5.560e-12689.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAX8_9STRA7.690e-9974.43Sec23/Sec24 trunk domain-containing protein n=1 Ta... [more]
A0A7S2V2R8_9STRA1.180e-9770.78Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S4D505_HETAK4.230e-8766.51Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A812VPB2_SYMMI8.450e-8060.63Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
M4BN79_HYAAE1.550e-7960.29Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A662XXV8_9STRA2.070e-7758.37Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A024TUF0_9STRA3.040e-7759.09Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4GMY2_9STRA1.090e-7659.73Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A1W0A274_9STRA2.130e-7658.18Transporter Sec24 (Fragment) n=1 Tax=Thraustotheca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5215contigH-paniculata_contig5215:9865..14133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score386.3
Seed ortholog evalue9.2e-105
Seed eggNOG ortholog2880.D7FPJ3
Preferred nameSEC24B
KEGG koko:K14007
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0002791,GO:0002793,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009889,GO:0009987,GO:0010556,GO:0010869,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0019222,GO:0019882,GO:0019884,GO:0019886,GO:0022607,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033218,GO:0034613,GO:0034622,GO:0035459,GO:0042175,GO:0042277,GO:0042592,GO:0042632,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045714,GO:0046872,GO:0046907,GO:0046914,GO:0048002,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048475,GO:0048518,GO:0048522,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051246,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0055088,GO:0055092,GO:0060255,GO:0061024,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070971,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0090087,GO:0090110,GO:0090114,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:1903530,GO:1903532,GO:1904951
EggNOG free text desc.ER to Golgi vesicle-mediated transport
EggNOG OGsCOG5028@1,KOG1985@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Exons4
Model size657
Cds size657
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5215.12580.1prot_H-paniculata_contig5215.12580.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5215 9865..14133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930519.388237-CDS-H-paniculata_contig5215:9864..99931622930519.388237-CDS-H-paniculata_contig5215:9864..9993Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5215 9865..9993 +
1691481328.9058273-CDS-H-paniculata_contig5215:9864..99931691481328.9058273-CDS-H-paniculata_contig5215:9864..9993Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5215 9865..9993 +
1622930519.4047112-CDS-H-paniculata_contig5215:10910..111621622930519.4047112-CDS-H-paniculata_contig5215:10910..11162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5215 10911..11162 +
1691481328.9156964-CDS-H-paniculata_contig5215:10910..111621691481328.9156964-CDS-H-paniculata_contig5215:10910..11162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5215 10911..11162 +
1622930519.4172676-CDS-H-paniculata_contig5215:13182..133291622930519.4172676-CDS-H-paniculata_contig5215:13182..13329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5215 13183..13329 +
1691481328.9262936-CDS-H-paniculata_contig5215:13182..133291691481328.9262936-CDS-H-paniculata_contig5215:13182..13329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5215 13183..13329 +
1622930519.4340022-CDS-H-paniculata_contig5215:14004..141331622930519.4340022-CDS-H-paniculata_contig5215:14004..14133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5215 14005..14133 +
1691481328.934401-CDS-H-paniculata_contig5215:14004..141331691481328.934401-CDS-H-paniculata_contig5215:14004..14133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5215 14005..14133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5215.12580.1

>prot_H-paniculata_contig5215.12580.1 ID=prot_H-paniculata_contig5215.12580.1|Name=mRNA_H-paniculata_contig5215.12580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
NKAVEFSKLQICVDLFLFSAQYTDVATLANLSKFSAGQLFYYPAFSSLRD
GEKFNADLTRVLTRATAFEAVMRVRATRGLRITNFYGNYFIRGTDLLALP
NCTPDSVFAVEFGYDEQLLTASVISVQAALLYTTSCGERRIRVHNLAIPV
EAVIQNVFESVNIDVLCNILAKQALEVALKSGLDTARGRIQQACVDIIRA
SRGGGYGSSPYMATGAQQQ
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mRNA from alignment at H-paniculata_contig5215:9865..14133+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5215.12580.1 ID=mRNA_H-paniculata_contig5215.12580.1|Name=mRNA_H-paniculata_contig5215.12580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4269bp|location=Sequence derived from alignment at H-paniculata_contig5215:9865..14133+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAAGGCCGTGGAGTTCAGCAAGCTTCAGATCTGCGTAGATTTGTTCCT TTTCAGCGCTCAGTACACGGACGTGGCCACCTTGGCCAACCTATCGAAAT TCTCAGCCGGGCAACTGTTTTACTACCCGGTGAGAGCCTTGAGCGAGAAG TTCGATTCAGTTAACGCTTATATGGAAGGAGAGGATAGAGAGAGCAAGCA CACGTGAGACGTGAAGTTAAAATAGGTTACAGTTCGTGACATATGGGACG CTGTGAAGCAGGCGCGCCCTGGCTAGATGCAAAGTTTTATATGTGGTGGG CAGATTTTATGCGGTTATACTGTATGTTAGGTTTTTTTGCTTTGGTAGCG ATAGAAGACTATAGTTACTAATACTGTTTGTGCGATCCGCTCGAAAATTG GCCGAAAATAATTTTTGTCTTCTGTTGTGGTGGTGTGTCGTGTTGTGTCC AGATGAAATTTAAACGGTGATGGAGTAAATATACCTAAAGTCGAAACGCA GGCTACCTCAATCTTGCATCGCTGCGTGTGGACGACAGGCTCGGTGACAA GTATACAATGCAGAATTGAAGAAAGTTGAAGGGATTGTCTGTTGATTCCT TTTCCTCTTTTGTTTTTTGTCTCTCGGTAACAAGGAAATATTTCCACATG AACGTGTACTCTGTAGCGTCTGTTGATGTGCCCTGCCGTGTTGATGTGGA TTAATGTCGTCTTTTTCTGTCCATGGGTGCTAAGTTGTGCATTGACCGTT TACGGATTTTGTGGTCAATTTATAATGTTCAAAATTCGTATTTTGGATTC CGTCTTTTAGGAGTTACTCACGTTTGGAGTCTAAAAAGAGTTCCGAAACA AGCATCACCTTAGCTCGTAATATTATAAGCATGCAGTATTTGGCGTACCT TTTGAGACGAAATCTACGTAGTCGCAGCGGAACACCTAATGCAATATACA TTTTCAAGTAGACTCAAGTAAACTATGCTTTCGAACAGACGGAGGAATCG TATGTGGCTTCCCATTTCCGATCCTTGTACTGAAACATGAAAATAGGCGT TCTCTTCGCTGCGAGACGGGGAGAAGTTCAATGCCGATCTGACGAGGGTT TTGACGAGAGCTACGGCGTTCGAGGCGGTCATGCGTGTGCGGGCGACCCG TGGCCTGCGCATCACAAACTTCTACGGCAACTACTTCATCCGCGGGACTG ATCTCTTGGCGCTGCCCAACTGCACTCCCGACAGCGTGTTTGCGGTGGAG TTTGGCTACGATGAGCAGCTGCTGACGGCGTCGGTCATCTCCGTGCAGGT GATGATGGCGATCGCGATGATTATGATGGTGGTGGCGATGATTGCTATTC CCTTGTCTTGTGTGACGTTTAGGTTAGGTTTCGTTATTGCCTTTGTGATC CACGGGCGGTTGTAGCAAGTCATCATGTCATCGTACTGTCTTGCATTTGC ACCTACTGAAGACGGGCATGTGTTTGTGGTGTTTATCGTGCCCTTTGATT GTCTGACTGAGAATTAGATGTGGCGTGTTTGGCCCTCGGAAACGAGGCGT TGTGCAAAAACGTGAGCACTACAATGCGCACTTGTCCCATGTGTAGGCAG GCGTACTATTTTTCGTTTTGTTACTACTCATGTAGTTTGTATATATTGGG ACAACAGGTAACATAGTACTTGATCTGACGCCATATCTCGAGATCTACAA CATGAAAAGTGACTCGAAATTTTGCACAGGCCTTGTCTGTGCAAGGACTA AAACTTTTGTTGTGGGGCATCGGCGAAAACATGGAGAAAAAATGGAATTT TGAGGTCTAAAACTCAACACGAAAGAGTATACGAAAATCTGGATTTTCAC CAGTAACTCGAGATAAGGAATAGAAGAAACAAATTTCCCAAGGTGACCAC ATCGGCATAGTGACGGAGATCATGTACCAAAAGATTTGGTGTAGAAAATT TGTAATTCTAGCGAGTTGTCGTGTCACGAAGATCTGCGTAGAGTATAACC AACGTTACTCGGTACACTGGTATGGTAAATTGTTAGTTTTGCCTATTTCT GGGCTATTTTCGCTCCGTTTTCCATGATGTTTTTTTTTATTGTATTCGGA CAAGCAATGCAGATGGGATGCGTTACATCAGCTTTCGTTTCACCTGGGGA ATCCCCATATTAATAACATCGGCGAGGTACAACAATGTAAGATGGAGGAG TGTTGAGATATTGTTGAGAGGGTGTGGTGAAGGATAGCAGAGATTGACCC AAAATGAAGGCCGCAATTGCACTTGGGACGCCTGTATGTTGTCGGCACGT GGAAAAGGTTTACATGCACTTCTGTACGCTAAAACAAAACGGGTGTTTCT GTTCGTATAATCCGTCGACTTGTTAACAAACAAACCGACGCACCCAAACA GACGGTGCCACGTAATAATACTGGCGCGCGGTTACGGACAGTTCAGCTGC TAGCCACCTCTTGTACTGTAGGACAAAAGCAAACAAGTCCTTACCCCCGT GTACTGTTGCTGAGGAAATCTCACGTATCCAGGTATTGTCAAACTTGCTC TACATAAACCTAATCCTAATGCCTACTTACTCGTCACTTGCGCCCTCACA CTAGTCTTCCTCCTAAAAGTCTGCCTGAAACTCGTTTAGTTTATCGTCTA ATCCTCTTTCCCCGTCCTTATCCCAATCCTCGCGGTAAGTACTACCTTGA TATGTGACGTGGAAAAATTTGATCCCGCCGCTTTAGAAACCCCCCCCCCT CCCAAAAAAAACGTGTTCCCTAGTCATCGACCCCCAGTTCTTCATCGCCA TAGCAGATACACCAAAACCCTAACGTGACCACATCCGCTATGTCAAGAGG AATACGTCTGCGCTAGTTCACCTTCGTGGCCGTATTTTGTGGCTGTGGAG TGCGTTTCAAGTGACGTGTTGTATTTTTGCCCGACATGACCAAATTCAAA CTCACTCTATCTTGGCAATAGGTTGTTGAATGTTTATTCGTCTTTTTTTC GTTGCTTTGGCATCATCTCCACCTTTCCGGGCATTTCTAGTTTATAGGTG ATGAGACCGTTACTCCGCGAAAATTGGACTACTAGGAGTGTAAAATTCGG GGAAAAGCGAATTAAAAAAGTTGATAATCATCTCTGTAGCACACCAAGGA CTACCTCATTCTGTAGTAGATATATGTCGCATTGCGAAGACTCTTGTGTG AAATCACGGTCTGCTATCCGTGAACATGCCTTTGATATGCTCTTGAAGCA ATGTGTATTATGCCTTACCCTTGCCCTACTTACCTTATCTTTGATCGCAT GGAAATAAAATATAACAGGCGGCGTTGCTGTACACCACCTCCTGCGGCGA GCGACGCATACGGGTACACAACCTGGCCATCCCGGTGGAGGCGGTGATTC AAAATGTCTTCGAGAGCGTCAACATCGACGTGCTGTGCAACATCCTCGCC AAGCAGGCCTTGGAGGTGTGAATGATTGTCGTGGAGCCAGTCGCTCTTTT TTTATGAGATCAGTTGGGCTATGTTCCCTTTAAGAAGGCCGCGTCTTATC GACTCACAAGAAAAATACTTTGAAAAACAATTTTACAGTCTACTTCTGGG TGCAAATTTTGACTGTAGATTAACATGCACGTCAATAATATTATACAAGC GTTGAGCTTTCAATGACTAGTCCAACGACCCAAGGCCAGGCATTTCGTGT CCTCTGTCCTTCGTCCCTGCCATGTGCCGTGGAATACGGAGTGTATATAC CACCTCGAGACGTGGCTTTTTTCAAACTCGATTTCCTCGGGAAGCAAACG CGGTGTCCTTAAAAGGGTCTCGTCGAGAGCTGTGGATGGGTCGATGTGCC ATGCTCCATAAACGCGGTGTCTTGCATCTCGACAAAATTCAATTTGAGCG CTATCCTCCGTCGCGAGTTTTGTCATAATTCCGCCGTTTCGTGGACATGT TAGCCAGCGTTTCAAGACACGTTCTGTGTACGTGCCTTCATCTTGATTAG CCGTGAAAAGTCGTATATTATGCCCTCTCTCCTTTCATTTCGATTTATCC TCGCTAAAAAATATTTGTCGCGGCTATTTGCGGTGTTTGGTGCTTGCTGC ACTATTTTTCCTTCGGTATGTTGCTCTTTTTCTTTGAAAGGTGGCGCTCA AGTCAGGGCTCGACACCGCTCGCGGGCGCATCCAGCAGGCTTGTGTAGAC ATCATACGCGCCAGCCGGGGGGGGGGGTACGGCTCAAGCCCCTACATGGC GACCGGAGCGCAGCAACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5215:9865..14133+

>mRNA_H-paniculata_contig5215.12580.1 ID=mRNA_H-paniculata_contig5215.12580.1|Name=mRNA_H-paniculata_contig5215.12580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig5215:9865..14133+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAAGGCCGTGGAGTTCAGCAAGCTTCAGATCTGCGTAGATTTGTTCCT
TTTCAGCGCTCAGTACACGGACGTGGCCACCTTGGCCAACCTATCGAAAT
TCTCAGCCGGGCAACTGTTTTACTACCCGAACAAGGCCGTGGAGTTCAGC
AAGCTTCAGATCTGCGTAGATTTGTTCCTTTTCAGCGCTCAGTACACGGA
CGTGGCCACCTTGGCCAACCTATCGAAATTCTCAGCCGGGCAACTGTTTT
ACTACCCGGCGTTCTCTTCGCTGCGAGACGGGGAGAAGTTCAATGCCGAT
CTGACGAGGGTTTTGACGAGAGCTACGGCGTTCGAGGCGGTCATGCGTGT
GCGGGCGACCCGTGGCCTGCGCATCACAAACTTCTACGGCAACTACTTCA
TCCGCGGGACTGATCTCTTGGCGCTGCCCAACTGCACTCCCGACAGCGTG
TTTGCGGTGGAGTTTGGCTACGATGAGCAGCTGCTGACGGCGTCGGTCAT
CTCCGTGCAGGCGTTCTCTTCGCTGCGAGACGGGGAGAAGTTCAATGCCG
ATCTGACGAGGGTTTTGACGAGAGCTACGGCGTTCGAGGCGGTCATGCGT
GTGCGGGCGACCCGTGGCCTGCGCATCACAAACTTCTACGGCAACTACTT
CATCCGCGGGACTGATCTCTTGGCGCTGCCCAACTGCACTCCCGACAGCG
TGTTTGCGGTGGAGTTTGGCTACGATGAGCAGCTGCTGACGGCGTCGGTC
ATCTCCGTGCAGGCGGCGTTGCTGTACACCACCTCCTGCGGCGAGCGACG
CATACGGGTACACAACCTGGCCATCCCGGTGGAGGCGGTGATTCAAAATG
TCTTCGAGAGCGTCAACATCGACGTGCTGTGCAACATCCTCGCCAAGCAG
GCCTTGGAGGCGGCGTTGCTGTACACCACCTCCTGCGGCGAGCGACGCAT
ACGGGTACACAACCTGGCCATCCCGGTGGAGGCGGTGATTCAAAATGTCT
TCGAGAGCGTCAACATCGACGTGCTGTGCAACATCCTCGCCAAGCAGGCC
TTGGAGGTGGCGCTCAAGTCAGGGCTCGACACCGCTCGCGGGCGCATCCA
GCAGGCTTGTGTAGACATCATACGCGCCAGCCGGGGGGGGGGGTACGGCT
CAAGCCCCTACATGGCGACCGGAGCGCAGCAACAGGTGGCGCTCAAGTCA
GGGCTCGACACCGCTCGCGGGCGCATCCAGCAGGCTTGTGTAGACATCAT
ACGCGCCAGCCGGGGGGGGGGGTACGGCTCAAGCCCCTACATGGCGACCG
GAGCGCAGCAACAG
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