mRNA_H-paniculata_contig52141.12578.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52141.12578.1
Unique NamemRNA_H-paniculata_contig52141.12578.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig52141.12578.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.130e-36
Identity = 71/113 (62.83%), Postives = 86/113 (76.11%), Query Frame = 1 
Query:    7 TISNRFASFGRG-ASGSTEGADEHASEEKQLDEIVAGEIERYKSLFITPDELDCREVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            T  +RF+ FGRG A  ST+   +  SE+++L E+VAGE+E YKSLFI  DELDCREVL WW+R G+  FP LAPVAQQVFG+QAA +QVERDFS    LL  NRSR++TYWVE
Sbjct:  136 TRKSRFSLFGRGDARSSTDDMADEDSEDRKLGEVVAGELEHYKSLFIKADELDCREVLPWWKRTGKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVE 248
[Close]
BLAST of mRNA_H-paniculata_contig52141.12578.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 9.770e-34
Identity = 70/115 (60.87%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 ATTISNRFASFGRG-ASGSTEGADEHASEEKQLDEIVAGEIERYKSLFITPDELDCREVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            AT    RFAS  R    G TE   E  SE+K L + V+ E+ER+++L++T +ELD REVL WWR  GRK FPCLAPVAQQV G+QA AAQVERDFS C NLL  NRSR++TYWVE
Sbjct:  445 ATKARPRFASLARNRVRGDTEDVGEGDSEDKVLMQQVSQELERFQALYMTAEELDTREVLPWWRNTGRKMFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVE 559
[Close]
BLAST of mRNA_H-paniculata_contig52141.12578.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 8.370e-33
Identity = 58/79 (73.42%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:  106 VAGEIERYKSLFITPDELDCREVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            V+ EIERY SL+IT +ELD RE+L WWR+ GRK FP LAPVAQQVFG+QA AAQVERDFS C NLL  NRSR++TYWVE
Sbjct:    8 VSQEIERYHSLYITAEELDTREILPWWRQTGRKTFPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVE 86
[Close]
BLAST of mRNA_H-paniculata_contig52141.12578.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.310e-28
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:  118 IERYKSLFITPDELDCREVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            I+R+++L++T +ELD REVL WWR  GRK FP LAPVAQQV G+QA AAQVERDFS C NLL  NRSR++TYWVE
Sbjct:   87 IDRFQALYMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVE 161
[Close]
BLAST of mRNA_H-paniculata_contig52141.12578.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.050e-18
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:   94 LDEIVAGEIERYKSLFITPDELDCREVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            ++E V+GEI RYK +F+ P +L   +VL +W + G++ FP L  VAQQ FGSQA+AAQ+ERDFS C      NRSR E YW+E
Sbjct:  466 VEEEVSGEIIRYKGVFMKPIDLPPSDVLAYWNKVGKQMFPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWLE 548
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BLAST of mRNA_H-paniculata_contig52141.12578.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 7.760e-17
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:   55 TEGADEHASEEKQLDEIVAGEIERYKSLFITPDELDCREVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            T GA E +      D  VAGEI+R ++L +   +L  R+VL +W++ GR AFP L  VAQQ FGSQA AAQ+ERDFS    L  +NR+R++ YWVE
Sbjct:  348 TAGAVEQSGSGDDGDLSVAGEIQRSRALQMNSSDLQPRDVLNYWKQSGRHAFPALNYVAQQRFGSQAYAAQIERDFSTGGLLGASNRNRLDEYWVE 443
[Close]
BLAST of mRNA_H-paniculata_contig52141.12578.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.760e-15
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:  208 FPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            FP LAPVAQQV G+QA AAQVERDFS C NLL  NRSR++TYWVE
Sbjct:    2 FPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVE 46
[Close]
BLAST of mRNA_H-paniculata_contig52141.12578.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.890e-13
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:  169 EVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            EVL +W R G+ AFP L  VAQQ FG+QA+AA VERDFS C   +V NRSRV+ YWVE
Sbjct:  389 EVLSYWGRTGKHAFPSLKHVAQQTFGNQASAAPVERDFSGCGLFMVPNRSRVDEYWVE 446
[Close]
BLAST of mRNA_H-paniculata_contig52141.12578.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 7.180e-11
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  166 REVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWV 339
            R+VL +W + G +  P L  VAQQ FGSQA+AAQ+ERDFS C      NRSR E YW+
Sbjct:  596 RDVLTYWNKVGEQMLPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWL 653
[Close]
BLAST of mRNA_H-paniculata_contig52141.12578.1 vs. uniprot
Match: A0A6H5KBM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 6.580e-10
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 1 
Query:   49 GSTEGADEHASEEKQLDEIVAGEIERYKSLFITPDELDCREVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNLLVANRSRVETYWVE 342
            G T+   E  SE+K L + V+ E+ER+++L++T                           A +V G+QA AAQVERDFS C NLL  NRSR++TYWVE
Sbjct:  192 GDTKDVGEGDSEDKVLMQQVSQELERFQALYMT---------------------------AGEVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVE 262
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52141.12578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JZQ5_9PHAE1.130e-3662.83Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KZ46_9PHAE9.770e-3460.87Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KSA7_9PHAE8.370e-3373.42Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVT2_9PHAE1.310e-2869.33Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5JB08_9PHAE1.050e-1853.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFQ8_9PHAE7.760e-1750.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KP16_9PHAE5.760e-1577.78Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K8W6_9PHAE1.890e-1363.79Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K0P1_9PHAE7.180e-1155.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBM2_9PHAE6.580e-1040.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52141contigH-paniculata_contig52141:24..621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930519.0350685-CDS-H-paniculata_contig52141:24..2101622930519.0350685-CDS-H-paniculata_contig52141:24..210Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52141 25..210 -
1691481328.7738438-CDS-H-paniculata_contig52141:24..2101691481328.7738438-CDS-H-paniculata_contig52141:24..210Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52141 25..210 -
1622930519.0719695-CDS-H-paniculata_contig52141:465..6211622930519.0719695-CDS-H-paniculata_contig52141:465..621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52141 466..621 -
1691481328.7843468-CDS-H-paniculata_contig52141:465..6211691481328.7843468-CDS-H-paniculata_contig52141:465..621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52141 466..621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52141.12578.1prot_H-paniculata_contig52141.12578.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52141 25..621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52141.12578.1

>prot_H-paniculata_contig52141.12578.1 ID=prot_H-paniculata_contig52141.12578.1|Name=mRNA_H-paniculata_contig52141.12578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
ATTISNRFASFGRGASGSTEGADEHASEEKQLDEIVAGEIERYKSLFITP
DELDCREVLLWWRRQGRKAFPCLAPVAQQVFGSQAAAAQVERDFSCCRNL
LVANRSRVETYWVE
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mRNA from alignment at H-paniculata_contig52141:24..621-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52141.12578.1 ID=mRNA_H-paniculata_contig52141.12578.1|Name=mRNA_H-paniculata_contig52141.12578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=598bp|location=Sequence derived from alignment at H-paniculata_contig52141:24..621- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCACCACTATCTCGAACAGGTTCGCTTCCTTCGGGCGAGGCGCCAGCGG
CAGCACTGAAGGCGCCGACGAGCATGCCAGTGAGGAGAAGCAGCTGGACG
AGATTGTGGCCGGGGAAATCGAGCGCTATAAGTCGCTCTTCATCACGCCC
GACGAGGTATGTCAAATTGAAAATGACTTGCATGATTTTATTTGCTTGAC
GCATAACCTTGTTGAGTACCACGTCGCAAGGAAAGGATAAGGATGAGTTG
GCTCCGCATAATATTTTCATTTTTGTTGCGTGCTGGCGATACAAACGAAA
TACGAAGTAGTTATTTTTGAAAACGGAATTGAATCGGTTTTTAATAGAGT
TAAACATACATCTTAAATATCTAAACATCACCTCCGTCTGTATTTTGTTT
AAATTGTGCAGCTCGATTGTCGGGAAGTGCTGCTTTGGTGGAGACGCCAA
GGCCGGAAGGCGTTCCCCTGCCTCGCGCCTGTCGCACAGCAAGTTTTTGG
GAGCCAGGCGGCTGCCGCGCAGGTTGAGCGCGACTTTAGTTGTTGCCGTA
ACCTACTGGTGGCCAACAGGAGCCGCGTCGAAACCTACTGGGTAGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig52141:24..621-

>mRNA_H-paniculata_contig52141.12578.1 ID=mRNA_H-paniculata_contig52141.12578.1|Name=mRNA_H-paniculata_contig52141.12578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig52141:24..621- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCACCACTATCTCGAACAGGTTCGCTTCCTTCGGGCGAGGCGCCAGCGG
CAGCACTGAAGGCGCCGACGAGCATGCCAGTGAGGAGAAGCAGCTGGACG
AGATTGTGGCCGGGGAAATCGAGCGCTATAAGTCGCTCTTCATCACGCCC
GACGAGGCCACCACTATCTCGAACAGGTTCGCTTCCTTCGGGCGAGGCGC
CAGCGGCAGCACTGAAGGCGCCGACGAGCATGCCAGTGAGGAGAAGCAGC
TGGACGAGATTGTGGCCGGGGAAATCGAGCGCTATAAGTCGCTCTTCATC
ACGCCCGACGAGCTCGATTGTCGGGAAGTGCTGCTTTGGTGGAGACGCCA
AGGCCGGAAGGCGTTCCCCTGCCTCGCGCCTGTCGCACAGCAAGTTTTTG
GGAGCCAGGCGGCTGCCGCGCAGGTTGAGCGCGACTTTAGTTGTTGCCGT
AACCTACTGGTGGCCAACAGGAGCCGCGTCGAAACCTACTGGGTAGAGCT
CGATTGTCGGGAAGTGCTGCTTTGGTGGAGACGCCAAGGCCGGAAGGCGT
TCCCCTGCCTCGCGCCTGTCGCACAGCAAGTTTTTGGGAGCCAGGCGGCT
GCCGCGCAGGTTGAGCGCGACTTTAGTTGTTGCCGTAACCTACTGGTGGC
CAACAGGAGCCGCGTCGAAACCTACTGGGTAGAG
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