mRNA_H-paniculata_contig5201.12556.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5201.12556.1
Unique NamemRNA_H-paniculata_contig5201.12556.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5201.12556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5201contigH-paniculata_contig5201:6428..7616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size519
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930516.6665685-CDS-H-paniculata_contig5201:6427..65611622930516.6665685-CDS-H-paniculata_contig5201:6427..6561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5201 6428..6561 -
1691481327.6902132-CDS-H-paniculata_contig5201:6427..65611691481327.6902132-CDS-H-paniculata_contig5201:6427..6561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5201 6428..6561 -
1622930516.6841433-CDS-H-paniculata_contig5201:7231..76161622930516.6841433-CDS-H-paniculata_contig5201:7231..7616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5201 7232..7616 -
1691481327.7093558-CDS-H-paniculata_contig5201:7231..76161691481327.7093558-CDS-H-paniculata_contig5201:7231..7616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5201 7232..7616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5201.12556.1prot_H-paniculata_contig5201.12556.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5201 6428..7616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5201.12556.1

>prot_H-paniculata_contig5201.12556.1 ID=prot_H-paniculata_contig5201.12556.1|Name=mRNA_H-paniculata_contig5201.12556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp
QPAPPSAKKRIVDLSDDEEDLQSSAISINSDTDSPSAPRAHDDLDSRNAA
NNAGDDCQHLTPDNFPASLPVSGDGTKAAAAGAMVAAEASARNIKSTRVA
SRRGNCGEDEDMSKVDLGKGLEGVTTSGDSDEEAELDAIGAAEHGEGAFA
SDFDDDDDDNNDGDGGVSDAQEG
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mRNA from alignment at H-paniculata_contig5201:6428..7616-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5201.12556.1 ID=mRNA_H-paniculata_contig5201.12556.1|Name=mRNA_H-paniculata_contig5201.12556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1189bp|location=Sequence derived from alignment at H-paniculata_contig5201:6428..7616- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCGGCGCCCCCAAGCGCCAAGAAAAGGATAGTTGACCTATCAGACGA
CGAAGAGGACCTGCAGAGCTCGGCTATTTCTATCAATAGTGACACGGATT
CACCGTCTGCCCCCCGTGCTCATGATGACCTGGATAGCCGCAACGCTGCC
AACAACGCCGGCGATGATTGCCAGCACCTAACACCCGATAACTTTCCAGC
ATCGTTGCCTGTAAGCGGCGACGGCACCAAGGCAGCGGCAGCGGGCGCGA
TGGTGGCGGCAGAGGCCAGTGCTAGAAATATCAAAAGCACAAGAGTTGCT
TCACGGAGGGGAAACTGTGGCGAGGACGAAGACATGTCTAAAGTGGATCT
AGGCAAGGGCTTGGAAGGCGTTACTACCAGCGGTGGTAAGATCGTAGTAC
ATGATAACGGAGCGTTTACGTGTTCCCGGCGTGCCAGAGAGTCAGTCCTT
GCCGAAGGGTTCTGTATGACCGATGTGGCTATCACGTTCTCAGGCCGGAC
TAGTGCCGCATATATAGCGTTATGGTTTAGAGAGATTGTGTCTGTTCTGT
TGCTGTTGCTGCGAGTGGTGTATTGATGGGCGCTGGCAAAACGCTGGTCG
ACTGCGTGGTAAGTATCTGATTCACGCGTGCCTCGACGATCTGTAAGAAT
GCGTCGGGTACAAGACAGCGCTCGTCAAGTGATGCGTCGACGTTTATGAC
GCTGTCAGCACAGCGTGGCAGATCACCGCAACAAGTGACAAGATTTCGCG
ATGTATTGCCACATTTTTGTCGTGTCGGCGTGATAGCAAATCTCAGCATG
AATAAAACCAGACCGCGCCCGCTGAGTTTCAATCGTTTCCAGTAGTCAAC
GGTTACGCCACTGTTACTCTTACTGATTACTGGCACACACAAAAGAGGAC
AGAGTGTTGCAGATCGTTATGTCGCATACACATTCCGCTATACGCTTGGT
GCGGGGTCTCAGTGCCGCAATCCGTAGTACATATCCATGGAACCTCAATT
GTAACTCTTGTTTCCTACTGTACCTTCCCGACACACGGCGGTGACCCTTC
AGCAGACTCCGATGAAGAGGCCGAATTGGATGCAATCGGCGCTGCCGAAC
ACGGAGAAGGCGCATTTGCAAGTGACTTCGACGACGATGATGATGATAAT
AATGACGGGGATGGTGGTGTTAGTGATGCTCAGGAGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5201:6428..7616-

>mRNA_H-paniculata_contig5201.12556.1 ID=mRNA_H-paniculata_contig5201.12556.1|Name=mRNA_H-paniculata_contig5201.12556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig5201:6428..7616- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCGGCGCCCCCAAGCGCCAAGAAAAGGATAGTTGACCTATCAGACGA
CGAAGAGGACCTGCAGAGCTCGGCTATTTCTATCAATAGTGACACGGATT
CACCGTCTGCCCCCCGTGCTCATGATGACCTGGATAGCCGCAACGCTGCC
AACAACGCCGGCGATGATTGCCAGCACCTAACACCCGATAACTTTCCAGC
ATCGTTGCCTGTAAGCGGCGACGGCACCAAGGCAGCGGCAGCGGGCGCGA
TGGTGGCGGCAGAGGCCAGTGCTAGAAATATCAAAAGCACAAGAGTTGCT
TCACGGAGGGGAAACTGTGGCGAGGACGAAGACATGTCTAAAGTGGATCT
AGGCAAGGGCTTGGAAGGCGTTACTACCAGCGGTGCAGCCGGCGCCCCCA
AGCGCCAAGAAAAGGATAGTTGACCTATCAGACGACGAAGAGGACCTGCA
GAGCTCGGCTATTTCTATCAATAGTGACACGGATTCACCGTCTGCCCCCC
GTGCTCATGATGACCTGGATAGCCGCAACGCTGCCAACAACGCCGGCGAT
GATTGCCAGCACCTAACACCCGATAACTTTCCAGCATCGTTGCCTGTAAG
CGGCGACGGCACCAAGGCAGCGGCAGCGGGCGCGATGGTGGCGGCAGAGG
CCAGTGCTAGAAATATCAAAAGCACAAGAGTTGCTTCACGGAGGGGAAAC
TGTGGCGAGGACGAAGACATGTCTAAAGTGGATCTAGGCAAGGGCTTGGA
AGGCGTTACTACCAGCGGTGACTCCGATGAAGAGGCCGAATTGGATGCAA
TCGGCGCTGCCGAACACGGAGAAGGCGCATTTGCAAGTGACTTCGACGAC
GATGATGATGATAATAATGACGGGGATGGTGGTGTTAGTGATGCTCAGGA
GGGAACTCCGATGAAGAGGCCGAATTGGATGCAATCGGCGCTGCCGAACA
CGGAGAAGGCGCATTTGCAAGTGACTTCGACGACGATGATGATGATAATA
ATGACGGGGATGGTGGTGTTAGTGATGCTCAGGAGGGA
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