mRNA_H-paniculata_contig5199.12546.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5199.12546.1
Unique NamemRNA_H-paniculata_contig5199.12546.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5199.12546.1 vs. uniprot
Match: A0A6H5JPI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPI8_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 6.020e-11
Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = 1 
Query:   10 YKVGDDRVLYEGTILTSWWDKNVSNAPSPLAYNTDDSGSTLLSSLYCDD-SGGGEVH-TSDET--WGGYLPCSTGPQV----DEDTTQPPVIKLTKSNGATYLVVEENSNYPNFLYSVW 342
            Y++G+  ++   T+  SW  ++ S   S L Y+ D+ G  ++S + C   S  G ++ T++E+  WG    C +GP +      D   PPVI L  + G  YL+VEE S+YP+FLYSVW
Sbjct:  161 YRIGES-IIRGNTVFASWSPQS-SRIASGLFYDIDN-GQAIVSEIACSTPSRTGSLYITAEESSKWGDVSECESGPSLVNASANDRASPPVILLNSTEGEAYLIVEEESSYPSFLYSVW 276
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5199.12546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPI8_9PHAE6.020e-1136.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5199contigH-paniculata_contig5199:10053..13233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size357
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5199.12546.1prot_H-paniculata_contig5199.12546.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5199 10055..13233 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930515.1146502-CDS-H-paniculata_contig5199:10054..101261622930515.1146502-CDS-H-paniculata_contig5199:10054..10126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5199 10055..10126 -
1691481326.8925855-CDS-H-paniculata_contig5199:10054..101261691481326.8925855-CDS-H-paniculata_contig5199:10054..10126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5199 10055..10126 -
1622930515.1282709-CDS-H-paniculata_contig5199:12848..129341622930515.1282709-CDS-H-paniculata_contig5199:12848..12934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5199 12849..12934 -
1691481326.9026651-CDS-H-paniculata_contig5199:12848..129341691481326.9026651-CDS-H-paniculata_contig5199:12848..12934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5199 12849..12934 -
1622930515.1475425-CDS-H-paniculata_contig5199:13037..132331622930515.1475425-CDS-H-paniculata_contig5199:13037..13233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5199 13038..13233 -
1691481326.9122522-CDS-H-paniculata_contig5199:13037..132331691481326.9122522-CDS-H-paniculata_contig5199:13037..13233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5199 13038..13233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5199.12546.1

>prot_H-paniculata_contig5199.12546.1 ID=prot_H-paniculata_contig5199.12546.1|Name=mRNA_H-paniculata_contig5199.12546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
NSRYKVGDDRVLYEGTILTSWWDKNVSNAPSPLAYNTDDSGSTLLSSLYC
DDSGGGEVHTSDETWGGYLPCSTGPQVDEDTTQPPVIKLTKSNGATYLVV
EENSNYPNFLYSVWKNTP
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mRNA from alignment at H-paniculata_contig5199:10053..13233-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5199.12546.1 ID=mRNA_H-paniculata_contig5199.12546.1|Name=mRNA_H-paniculata_contig5199.12546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3181bp|location=Sequence derived from alignment at H-paniculata_contig5199:10053..13233- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTCCAGGTACAAGGTGGGCGACGACCGTGTGCTCTACGAAGGCACCAT
TCTTACATCCTGGTGGGACAAGAACGTTTCTAACGCACCCAGTCCCCTAG
CCTACAACACGGACGACAGCGGGAGTACGCTTCTTTCATCTCTCTATTGC
GACGACTCAGGGGGTGGGGAAGTTCATACAAGCGATGAAACCTGGGGTGT
GTGCACCTCCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGAGAGT
CAACTGAGGTTATTTTGGTATAATGGTGCTCCTCTAAATTTGTGCACAGG
TGGCTACCTTCCGTGCTCTACCGGACCGCAGGTGGATGAGGACACTACAC
AACCCCCTGTGATCAAGCTGACCAAGTCGAACGGGGTGAGTTGCGTAGAC
GACGGTATATGCTAATTCCGGTGGTCACGTTTTACCTTGAACTTGTTTTC
TCCAGAATCAAGACCCTGTATTGTCGAAAGAGTGTCGAAAGAGTTCATCC
TACGAGATATGCTAATACAGGCTAAGCTCAGTTAGACAGGCCAACAACAG
TCCTTGGTCCTTCTCGTTCCCATTTCGGGAGTTTTGACCTGGAGTTTTGA
GGAGATAATAATAAGTACATCGTCCATAGAGGGACCTTGATGGATGATTT
TGCTTTCCTTCCCCCCCCCCCCCCAATTTGAGGGACATTTTCTTGGTTAT
CCGGTTTAGAGATTTGCAGCACACTAAGATATTGTCGCTCCATAGTTTCG
ATGGAGAGGGTTTATGGTCTATTTGTGGGCAATGGTCCGTGGAGGGTTAA
CCTGTTAAATTCTGGTATGTCATCGATTCAGGAGCATTACTGCAGGAAGT
GTTAATATCTAATAGATTCAAGGTGGAGTTTTCGTAGCTGTAAGAAGAAT
GTACGGCCCACCTGCGCATGTGCGATCGGAGATCAAGTAGGCGATCCGAA
GCATCGTCCATTGTATGTTCATGAAATTATTTGAAAAATACACGATTTCT
AGTGTATCTCCACCCCGCTGTTCGCATGAGCTTACCTGATCCGATTCTCG
GTCTTTTGCGCGATTTTGAAGTCGTCACATGTATCTGTGCTAAGCCTTTG
TCTTCCTTGCTAGAGGAGAGTCTGGCTTTAGTTCATGTGGCTGTGCTGTA
GGCTGATTTTTGTCAATTTGAACTCATATGTGCCGCAATTTGCCAACAGC
ATAAATGACAAAAAAATGTTCAAAAATAGGGTCTGGTAGTCTTGAAACTA
CAGCGGGTCGTGCTGGTCAGCCAGGTCGATGGCGCCATCGATTCTTTACT
GTTTCATGGCAACTCAATATTTCGAACCGGAAACACAATATCCCGAACAT
TAACGATCATTTCCAGAACCGGAACAAAGTCGTGATCAAAACTAACGAAA
AACGTGCAGGAACCTCGGTTTCCGAAACGGGAAATATTACCCCGAAATGT
CACTTCTTGCGCCGAGGATTACCTGTCCGGTCATCTCTCTGTTGTCCGGG
ACCTTCCCATGGCGAACCGGGCGGTTGGCGATGGATACGTCTGCAGGCAT
AGGGGTGACTGGTTGGTCCGGTGGAAATATTCATCAGCCACCGTGGTCGC
TCATTGATCTGGTGGGAATTTTTTCGCTGGCAAGGTCGACCAGATCAGCG
AGCCACGGGGTAGGTGTAGAGCCCTGGTAATTAGTCCGGCTTTTATAATG
TCGTTGTCTTTTTTTCGGAGTACAACAACTCGTTTCGCACTGTCGGTCAT
ATAGTCGTACAGGTTTTGCACGCCATGCTCGAGGGCGCTGAAAATCGAGG
CAGACCTCCCCTAACTAGTTGCGACCAACGCCCCGCATTTTGGGCTTTAG
CGGTGCAGAATCTTGTGATCGCGGGAAGATGGACTGCCGCCAACACGTAG
CAGCTACCTAGCCTTGGCGAAGACATTTTCATGCACTAAAATCCTGTGTA
AACCAAATAGAACAACGCCTGAACTTCACAACATTAAAATCTTGGCGCAT
GTTGTACCATCGACAAAACTGCCGCGACGGGTGATCCTTGCTAGCATTGT
ATTGCGTCCTTGATATGAGAGCTTGCGTGAGTTACAAGGGGTGCAATCAG
TCCACACCTTTGTTTGACCTTCAATTCTGCTAGAAGTGGAGCATGGCATC
AATGAGTACAGAATGTACCGTCTATACGGTCCGTCTGAATGTCTGCAGAT
ACCAAGAGGAGCATCCGGCGGTGACTGTTAGACTGTCGGCAAGCGTTTTC
CATGTGGTCGCGTGCAGACCATGCCAACAGGCAGGCATTCTCTCGTGTCA
AAAGACAGTCATCTCGTGGTAGATTTCTGTGTGTGGAGAACCACTGTGCT
CCTGCAACTGTTTGTTCTTTTTACCAGGACACAGCTCTCAAGTTAAGTCA
ATACCGTAACACTCTTCGATTTTGCACAGCCTGATACTATTTTCCAATAC
CCGATTTTCTCGAGGAGCAAGAAAGAGCCTGCACTTCCGAAACAGCAAGT
CTATCGGAAGATCTCAACGCCATCTTTACAACGATACCACTATCGGTGTT
ATGAACACCGCCGTCGTCGTCGAGAAAAAATCAAGTTTGAAGGATAGCAT
CAGGGGATGTTACGGTACCTTCTCTAAACGTGAAAAATGCCCACGTCATG
AATTACGACCAATGTCAAGCCTCATTCCGACGCGCTGTGAAGTTTCGAGA
ATTGTCACTTGCTGAATTTTAACCTGAGGGGGCCTAATAAATTGCGTCCT
CTAGCATATGCAGCCTCATTTTCATAGACGAGGACGGCCATAAACGGACC
AAGGGGCGCGCAAGGGGTTCATCAACAGTGGTGCTTTTCTTCAAGATTTC
GCAAAACTGGTGTTGTTGTACCACCACTGTATATCGAGTTAGAGGGCCCT
TTATCACTATCGCCGAGCGGCTTTTCTACGTCAAATAGCGATCACGAGAA
GTTGAACGACGGAGACATGGCGGGGACATCGGGCAGGATCCACAACATCT
GCCAGCCCACACCCCGAACGGCGCTCGTACAACAATATACGATCTAGATC
AACGACGAACAACACGAACGAGGGCCCTTTTTTGCTTGTTTTTCTGTTTT
GAAACAGGCCACGTACCTAGTGGTGGAAGAAAACAGCAACTACCCGAACT
TTCTATATTCCGTATGGAAAAACACACCGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig5199:10053..13233-

>mRNA_H-paniculata_contig5199.12546.1 ID=mRNA_H-paniculata_contig5199.12546.1|Name=mRNA_H-paniculata_contig5199.12546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig5199:10053..13233- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTCCAGGTACAAGGTGGGCGACGACCGTGTGCTCTACGAAGGCACCAT
TCTTACATCCTGGTGGGACAAGAACGTTTCTAACGCACCCAGTCCCCTAG
CCTACAACACGGACGACAGCGGGAGTACGCTTCTTTCATCTCTCTATTGC
GACGACTCAGGGGGTGGGGAAGTTCATACAAGCGATGAAACCTGGGAACT
CCAGGTACAAGGTGGGCGACGACCGTGTGCTCTACGAAGGCACCATTCTT
ACATCCTGGTGGGACAAGAACGTTTCTAACGCACCCAGTCCCCTAGCCTA
CAACACGGACGACAGCGGGAGTACGCTTCTTTCATCTCTCTATTGCGACG
ACTCAGGGGGTGGGGAAGTTCATACAAGCGATGAAACCTGGGGTGGCTAC
CTTCCGTGCTCTACCGGACCGCAGGTGGATGAGGACACTACACAACCCCC
TGTGATCAAGCTGACCAAGTCGAACGGGGTGGCTACCTTCCGTGCTCTAC
CGGACCGCAGGTGGATGAGGACACTACACAACCCCCTGTGATCAAGCTGA
CCAAGTCGAACGGGGCCACGTACCTAGTGGTGGAAGAAAACAGCAACTAC
CCGAACTTTCTATATTCCGTATGGAAAAACACACCGGCCACGTACCTAGT
GGTGGAAGAAAACAGCAACTACCCGAACTTTCTATATTCCGTATGGAAAA
ACACACCG
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