mRNA_H-paniculata_contig5137.12447.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5137.12447.1
Unique NamemRNA_H-paniculata_contig5137.12447.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5137.12447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5137contigH-paniculata_contig5137:12185..12487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size305
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930503.6167393-CDS-H-paniculata_contig5137:12184..124871622930503.6167393-CDS-H-paniculata_contig5137:12184..12487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5137 12185..12487 +
1691481322.0646596-CDS-H-paniculata_contig5137:12184..124871691481322.0646596-CDS-H-paniculata_contig5137:12184..12487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5137 12185..12487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5137.12447.1prot_H-paniculata_contig5137.12447.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5137 12185..12487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5137.12447.1

>prot_H-paniculata_contig5137.12447.1 ID=prot_H-paniculata_contig5137.12447.1|Name=mRNA_H-paniculata_contig5137.12447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
VPLFWTFDTLPVPVHPGIFECNTYGTHAYHSIWGISIPTLTAHSDIIECH
TLPMVPVENSLLYITASDDGYYKCQPSLHTGLPVAKQSCLIQMARSSSTI
*
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mRNA from alignment at H-paniculata_contig5137:12185..12487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5137.12447.1 ID=mRNA_H-paniculata_contig5137.12447.1|Name=mRNA_H-paniculata_contig5137.12447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at H-paniculata_contig5137:12185..12487+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACCATTATTTTGGACATTTGATACCTTACCGGTACCAGTCCATCCCGG
TATTTTCGAATGTAATACCTATGGTACCCACGCATACCACAGTATCTGGG
GGATTTCAATACCTACCTTAACGGCACATTCCGATATTATCGAATGTCAT
ACCTTACCTATGGTACCTGTGGAAAACTCGTTACTTTACATTACAGCTTC
CGACGATGGTTATTACAAATGCCAACCATCCCTGCATACAGGACTGCCGG
TGGCAAAGCAGTCGTGTCTCATACAAATGGCTCGTTCATCATCCACAATC
TAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5137:12185..12487+

>mRNA_H-paniculata_contig5137.12447.1 ID=mRNA_H-paniculata_contig5137.12447.1|Name=mRNA_H-paniculata_contig5137.12447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig5137:12185..12487+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACCATTATTTTGGACATTTGATACCTTACCGGTACCAGTCCATCCCGG
TATTTTCGAATGTAATACCTATGGTACCCACGCATACCACAGTATCTGGG
GGATTTCAATACCTACCTTAACGGCACATTCCGATATTATCGAATGTCAT
ACCTTACCTATGGTACCTGTGGAAAACTCGTTACTTTACATTACAGCTTC
CGACGATGGTTATTACAAATGCCAACCATCCCTGCATACAGGACTGCCGG
TGGCAAAGCAGTCGTGTCTCATACAAATGGCTCGTTCATCATCCACAATC
TAGGTACCATTATTTTGGACATTTGATACCTTACCGGTACCAGTCCATCC
CGGTATTTTCGAATGTAATACCTATGGTACCCACGCATACCACAGTATCT
GGGGGATTTCAATACCTACCTTAACGGCACATTCCGATATTATCGAATGT
CATACCTTACCTATGGTACCTGTGGAAAACTCGTTACTTTACATTACAGC
TTCCGACGATGGTTATTACAAATGCCAACCATCCCTGCATACAGGACTGC
CGGTGGCAAAGCAGTCGTGTCTCATACAAATGGCTCGTTCATCATCCACA
ATCTAG
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