mRNA_H-paniculata_contig5068.12343.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5068.12343.1
Unique NamemRNA_H-paniculata_contig5068.12343.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: A0A8J9WSQ3_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WSQ3_9CHLO)

HSP 1 Score: 149 bits (375), Expect = 1.750e-38
Identity = 99/270 (36.67%), Postives = 137/270 (50.74%), Query Frame = 1
Query:    1 IPEFYILPKIHKPITVGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFDNRSVWTLVTADVVSLYPSLNVQQVITNTMIATREQYGPNWPSQIYHFLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERRRLEKH--LHIYLFRRYIDDIFCIVKDTERVTYQFLSSLYQEL--DLKLKFDMTQDKIEFLDLIVYKGIRWRIDGRLDLRTHQKKLNLYSYLPYRSAHPIHCKTGFMTGE 798
            +P FYI+PK+HK    GRPI A   + TTP S    + L P++  L TVLKD+  LI  ++   F   +   L TADV SLY S+ V   +       RE+      +     ++  + FVL N Y+ FDGK +   KGL MGTP AP LANI +A  E++       L   ++ R++DDIF  V+    + Y  L      +   +KL F  +  ++E LDL++YK         L  R HQK LN Y Y+  RS HP H   GF+  E
Sbjct:   61 VPAFYIMPKLHKEPVKGRPIVASCGWCTTPLSQWCANTLAPIVAQLPTVLKDTADLISRLKDVRFSVDANVLLSTADVESLYTSIPVGDAVEALAQTLREKRVGEKEAAC---IKLAVKFVLMNNYLTFDGKCYKQIKGLAMGTPLAPPLANIFMAHLEKKTFASRPGLCPVMYGRFLDDIF-YVQVLRNIPYHILPKALGNMHPSIKLTFKSSPIELEMLDLVIYKA-----GDHLLHRVHQKALNKYLYISSRSCHPPHVMRGFIRTE 321          
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: A0A8J9RII3_9CHLO (Uncharacterized protein n=2 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RII3_9CHLO)

HSP 1 Score: 149 bits (375), Expect = 1.170e-37
Identity = 99/270 (36.67%), Postives = 137/270 (50.74%), Query Frame = 1
Query:    1 IPEFYILPKIHKPITVGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFDNRSVWTLVTADVVSLYPSLNVQQVITNTMIATREQYGPNWPSQIYHFLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERRRLEKH--LHIYLFRRYIDDIFCIVKDTERVTYQFLSSLYQEL--DLKLKFDMTQDKIEFLDLIVYKGIRWRIDGRLDLRTHQKKLNLYSYLPYRSAHPIHCKTGFMTGE 798
            +P FYI+PK+HK    GRPI A   + TTP S    + L P++  L TVLKD+  LI  ++   F   +   L TADV SLY S+ V   +       RE+      +     ++  + FVL N Y+ FDGK +   KGL MGTP AP LANI +A  E++       L   ++ R++DDIF  V+    + Y  L      +   +KL F  +  ++E LDL++YK         L  R HQK LN Y Y+  RS HP H   GF+  E
Sbjct:  197 VPAFYIMPKLHKEPVKGRPIVASCGWCTTPLSQWCANTLAPIVAQLPTVLKDTADLISRLKDVRFSADANVLLSTADVESLYTSIPVGDAVEALAQTLREKRVGEKEAAC---IKLAVKFVLMNNYLTFDGKCYKQIKGLAMGTPLAPPLANIFMAHLEKKTFASRPGLCPVMYGRFLDDIF-YVQVLRNIPYHVLRKALGNMHPSIKLTFKSSPIELEMLDLVIYKA-----GDHLLHRVHQKALNKYLYISSRSCHPPHVMRGFIRTE 457          
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: A0A0L6V163_9BASI (Reverse transcriptase n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6V163_9BASI)

HSP 1 Score: 124 bits (312), Expect = 1.300e-28
Identity = 88/272 (32.35%), Postives = 133/272 (48.90%), Query Frame = 1
Query:    1 IPEFYILPKIHKPITVGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFD-NRSVWTLVTADVVSLYPSL-NVQQVITNTMIATREQYGPNWPSQIYHFLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERRRLE-KHLHIYLFRRYIDDIFCIVKDTE---RVTYQFLSSLYQELDLKLKFDMTQDKIEFLDLIVYKGIRWRIDGRLDLRTHQKKLNLYSYLPYRSAHPIHCKTGFMTGE 798
            IPEFYILPK+HK    GRPI    ++ TT  S  L + L+P L     +L+DS+ L++ + +     + S+W L+TADV S Y SL N         +AT+  Y           L   L FVL N ++ F   ++    G  MGT  AP+ AN+  A  E   ++ K   +  + R++DDI  IVK +     +  +F+       DL+L + ++Q  + FLD+ +          R+    +QK  N Y Y+P+ S HP   K  F+ GE
Sbjct:  172 IPEFYILPKVHKNPIKGRPIVPSFNWITTNLSKWLDYTLRPFLQEFPWILRDSKQLLQQLPALSLSKDDSIW-LLTADVTSFYSSLPNETGCKIIRWLATKNDYSDTDADT----LSEALGFVLNNNFLSFGSAVYRQVFGTAMGTACAPVYANLFAAAYESLTMDNKPTSLVYYGRFLDDILVIVKGSNTDVEIVKRFVDDSLG--DLELSWTVSQTSLAFLDINLQVNATDCSAPRITTSVYQKPSNAYQYIPWSSYHPPKVKLAFVKGE 436          
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: A0A0L6UKT0_9BASI (Reverse transcriptase (Fragment) n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6UKT0_9BASI)

HSP 1 Score: 119 bits (298), Expect = 1.030e-26
Identity = 91/287 (31.71%), Postives = 138/287 (48.08%), Query Frame = 1
Query:    1 IPEFYILPKIHKPITVGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFDNRS--VWTLVTADVVSLYPSLNVQQVITNTMIATREQYGPNWPSQIYH-------FLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERRRLEKHLHIYLFR-RYIDDIFCIVK----DTERVTYQFLSSLYQELDLKLKFDMTQDKIEFLDLIVYKGIRWRIDGRLD-------LRTHQKKLNLYSYLPYRSAHPIHCKTGFMTGE 798
            +PEFY+LPK+HK    GRPI   H + TT  S  L + L+P L +   +L+DS+TL+R +++      S  +W L+TAD+ S Y S+   + I              W + I+         L + L F+LKN Y+ F   ++    G  MGT  AP  AN+  A  E   L+K     L+  RY+DDI  IVK    + E V   F++   Q ++L   + ++   + FLD+ +      ++D   D          +QK  N Y Y+P+ S HP   K  F+ GE
Sbjct:  926 LPEFYVLPKVHKQPIRGRPIVPSHKWITTNLSKWLDYQLRPFLSSYPWILRDSKTLLRHLDTLALPTSSEKIW-LLTADMTSFYSSIPTDEGIKII----------RWMASIHKRSDDDADVLGQSLEFILKNNYLAFGSSVYRQVNGTAMGTACAPAFANLYAAAYESLTLDKKPPSLLYYGRYLDDILVIVKGSIANVEHVK-TFVNHTLQTMELS--WTVSPTSLPFLDITL------QVDEDPDSLKRSIVTSVYQKPSNAYQYIPWSSYHPPKVKLAFVKGE 1192          
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: A0A162HZF7_9EURO (Reverse transcriptase n=1 Tax=Ascosphaera apis ARSEF 7405 TaxID=392613 RepID=A0A162HZF7_9EURO)

HSP 1 Score: 115 bits (288), Expect = 2.070e-25
Identity = 87/280 (31.07%), Postives = 137/280 (48.93%), Query Frame = 1
Query:    1 IPEFYILPKIHKPITVGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFDNRS----VWTLVTADVVSLYPSL-------NVQQVITNTMIATREQYGPNWPSQIYHFLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLA-ISERRRLEKHLHIYLFRRYIDDIFCIVKDTERVTYQFLSSLYQELDLKLKFDMTQDKIEFLDLIV--YKGIRWRIDGRLDLRTHQKKLNLYSYLPYRSAHPIHCKTGFMTGE 798
            +P  + +PK+HK     RPI   HS+ TT  S ++    +P+L     VL  S+  I  +E       S    VW LV+ DV + Y ++       +V +      IA  EQ  P+ PS     +  ++ +V+   +  FDG ++   +GL MGTP+AP+LAN+  A I E+  + KH  +  + RY+DDIF + K +E     FL+ +     L + +  +Q    FLD+ V  YK     +   L  +   K +N + Y+P+ SAHP H K  F+  E
Sbjct:  604 LPRLHGIPKVHKEPWKMRPIVPSHSWITTCVSQVVDFLCRPLLAKYPWVLISSKDFIVQLEKVRSKPSSATDDVW-LVSGDVEAFYTNIPPSDCAFSVAEAYGKWNIAA-EQGRPHPPSP--EIIASMIGYVMDKNFFAFDGTIYKQTRGLAMGTPAAPVLANVYAASIEEQLPILKHARLLYYGRYLDDIFLMYKGSEEELKSFLAQVKLG-SLTISWSYSQTTEHFLDVEVLRYKNTSMEV-WTLATKLFVKPMNRHLYIPWSSAHPQHVKKAFVKAE 877          
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: UPI00109BD10C (uncharacterized protein LOC110237361 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BD10C)

HSP 1 Score: 110 bits (274), Expect = 1.980e-24
Identity = 73/196 (37.24%), Postives = 103/196 (52.55%), Query Frame = 1
Query:  217 LVTADVVSLYPSLNVQQVITNTMIATREQYGPNWPSQIYHFLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERRRLEKHL-HIYLFRRYIDDIFCIVKDTERVTYQFLSSLYQELD-LKLKFDMTQDKIEFLDLIVYKGIRWRIDGRLDLRTHQKKLNLYSYLPYRSAHPIHCKTGFMTGE 798
            LVTADV+SLYP++++++ +    +  RE   P  P  I        N VLK    +F  ++F    G+ MGTP A   AN  +   E+  + +   H+ L++R+IDDIFCI K        FLS L    D +KL   + ++KI FLDL++YK        RL   T QK LN Y Y+P+ S HP   K  F+ GE
Sbjct:   76 LVTADVISLYPNVDIKKALIALDLLLREAKAPETPLLIQFARLVFENNVLKT---EFSEEIFHQIYGIAMGTPFAVTAANAFMYYLEKDLVSQFSNHLVLYKRFIDDIFCIWKGPRDKLLDFLSCLNSRNDRIKLTHVIEENKISFLDLLLYKDSN---SNRLHFSTFQKPLNKYLYIPFESFHPGSNKKAFIRGE 265          
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: UPI00109BA0B3 (uncharacterized protein LOC114576718 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BA0B3)

HSP 1 Score: 112 bits (279), Expect = 2.890e-24
Identity = 72/183 (39.34%), Postives = 105/183 (57.38%), Query Frame = 1
Query:    7 EFYILPKIHKPITVGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFDNRSVWTLVTADVVSLYPSLNVQQVITNTMIATREQYGPNWPSQIYHFLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERRRLEKHL-HIYLFRRYIDDIFCIVK 552
            +FYI+PKIHK   VGRPIAA HS+ T P S  +   ++P L  + TVL+DS  LI+ +ES    ++    LVTADV+SLYP++++++ +    +  RE   P  P  I        N VLK    +F  ++F    G+ MGTP A   AN  +   E+  + +   H+ L++R+IDDIFCI K
Sbjct:  220 KFYIIPKIHKNPMVGRPIAASHSYITRPLSIFVDEXVKPRL-KMPTVLRDSGELIQALESIRLPSQCF--LVTADVISLYPNVDIKKALIALDLLLREAKAPETPLLIQFARLVFENNVLKT---EFSEEIFHQIYGIAMGTPFAVTAANAFMYYLEKDLVSQFSNHLVLYKRFIDDIFCIWK 396          
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: A0A0L6VM36_9BASI (Reverse transcriptase (Fragment) n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6VM36_9BASI)

HSP 1 Score: 110 bits (275), Expect = 1.060e-23
Identity = 87/280 (31.07%), Postives = 127/280 (45.36%), Query Frame = 1
Query:    1 IPEFYILPKIHKPITVGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFDNRS--VWTLVTADVVSLYPSLNVQQVITNTMIATREQYGPNWPSQIYH-------FLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERRRLEKH-LHIYLFRRYIDDIFCIVK----DTERVTYQFLSSLYQELDLKLKFDMTQDKIEFLDLIVYKGIRWRIDGRLDLRTHQKKLNLYSYLPYRSAHPIHCKTGFMTGE 798
            +PEFY+LPK+HK    GRPI   H + TT  S  L   L+P L +   +L+DS+ L+R +E+      S  +W L+TAD+ S Y S+   + I              W + I+         L + L F+LKN Y+ F   ++    G  MGT  AP  AN+  A  E   L+K    +  + RY+DDI  IVK    D E V   F++   + ++L    D    K   +  +                 +QK  N Y Y+P+ S HP   K  F+ GE
Sbjct:  365 LPEFYVLPKVHKLPIRGRPIVPSHKWITTNLSKWLDTQLRPFLSSYPWILRDSKALLRHLETLALPTSSDKIW-LLTADMTSFYSSIPTDEGIKIV----------RWMASIHKRSDDDADVLGQSLEFILKNNYLAFGSSVYRQVNGTAMGTACAPAFANLYAAAYESLTLDKKPASLLYYGRYLDDILVIVKGSISDVEHVK-TFVNHTLRTMELSWT-DPNSLKRSIVTSV-----------------YQKPSNAYQYIPWSSYHPPKVKLAFVKGE 614          
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: A0A8C5P9M3_9ANUR (Uncharacterized protein n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5P9M3_9ANUR)

HSP 1 Score: 108 bits (269), Expect = 1.470e-23
Identity = 87/265 (32.83%), Postives = 135/265 (50.94%), Query Frame = 1
Query:    4 PEFYILPKIHKPIT--VGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFDNRSVWTLVTADVVSLY---PSLNVQQVITNTMIAT-REQYGPNWPSQIYHFLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERR-----RLEKHLHIYLFRRYIDDIFCIVKDTERVTYQFLSSLYQ-ELDLKLKFDMTQDKIEFLDLIVYKGIRWRIDGRLDLRTHQKKLNLYSYLPYRSAH 762
            P  YILPKIHK  T   GRPI AG    T+  S  +  +LQP++  + + LKD+  +++ + +   +N  +  LVT DV +LY   P L    V+ N +  T R  Y      QI  F+ + +NF+LKN Y +F+ + ++  KG  MGT   P  AN+ +A  E +     R     ++  +RRYIDD+F I +  E     FL+ L   E  +KL    + D + FLDL +Y     R   +L  +T  K+++  +++   S H
Sbjct:  118 PHIYILPKIHKHPTNPPGRPIVAGIDSITSHLSEYVDLFLQPIVREIPSHLKDTLDMLKLINNLKLENNDI--LVTCDVNALYSNIPHLMGANVVHNEISKTNRMNYD-----QI-SFILKSINFILKNNYFKFEEEFYIQRKGTAMGTKFLPSYANLYMAGWESQFVYGSRSWALGNVLSYRRYIDDVFFIWRGLEDDLRSFLTGLDSPEWGIKLDSKWSNDSVTFLDLNIY-----REGNKLKSKTFFKEVDTNTFIEKNSCH 369          
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: A0A8J1LWW7_XENLA (uncharacterized protein LOC121398283 n=1 Tax=Xenopus laevis TaxID=8355 RepID=A0A8J1LWW7_XENLA)

HSP 1 Score: 106 bits (265), Expect = 2.040e-22
Identity = 81/274 (29.56%), Postives = 132/274 (48.18%), Query Frame = 1
Query:    4 PEFYILPKIHKPIT--VGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFDNRSVWTLVTADVVSLYPSLNVQ---QVITNTMIATREQYGPNWPSQIYHFLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERRRLEKHLH---IYLFRRYIDDIFCIVKDTERVTYQFLSSL-YQELDLKLKFDMTQDKIEFLDLIVYKGIRWRIDGRLDLRTHQKKLNLYSYLPYRSAHPIHCKTGFMTGE 798
            P  Y+LPKIHK +    GRPI +G      P S  +  +LQP++ N+ T LKD+  L++ +      ++ V +L + D+VSLY S+      + I   ++ T      N P+ +  FL   LN VLK  Y +F+ + +   +G  MG   AP  AN+ + + E+    KH +   I L+ RY+DDI  I K    + ++ ++        +K   + ++  I FLD+ +  G     DG L    ++K  +  + L   S H   C TG   G+
Sbjct:  151 PVLYVLPKIHKSMIDPPGRPIVSGVGSVLEPLSKFVDSYLQPLVQNINTCLKDTNDLLKRLNQISVLDKDV-SLCSIDIVSLYTSIPQDDGLKCIEEILLET------NLPNDLIFFLLDCLNLVLKKNYFRFEEEYYWQRQGTSMGAAVAPSFANLYVHMLEKALFFKHKYSANIELYLRYVDDILVIWKGDVSLFHEMIAEANIGHPTIKFTTETSKTSINFLDVKIGIG-----DGSLTTDLYRKPTDKNNLLKATSFHYPRCITGIPKGQ 412          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J9WSQ3_9CHLO1.750e-3836.67Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A8J9RII3_9CHLO1.170e-3736.67Uncharacterized protein n=2 Tax=Coccomyxa sp. Obi ... [more]
A0A0L6V163_9BASI1.300e-2832.35Reverse transcriptase n=1 Tax=Puccinia sorghi TaxI... [more]
A0A0L6UKT0_9BASI1.030e-2631.71Reverse transcriptase (Fragment) n=1 Tax=Puccinia ... [more]
A0A162HZF7_9EURO2.070e-2531.07Reverse transcriptase n=1 Tax=Ascosphaera apis ARS... [more]
UPI00109BD10C1.980e-2437.24uncharacterized protein LOC110237361 n=1 Tax=Exaip... [more]
UPI00109BA0B32.890e-2439.34uncharacterized protein LOC114576718 n=1 Tax=Exaip... [more]
A0A0L6VM36_9BASI1.060e-2331.07Reverse transcriptase (Fragment) n=1 Tax=Puccinia ... [more]
A0A8C5P9M3_9ANUR1.470e-2332.83Uncharacterized protein n=1 Tax=Leptobrachium leis... [more]
A0A8J1LWW7_XENLA2.040e-2229.56uncharacterized protein LOC121398283 n=1 Tax=Xenop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5068contigH-paniculata_contig5068:13668..14465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score76.3
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog400682.PAC_15708465
Hectar predicted targeting categoryother localisation
EggNOG OGs29YJV@1,2RXU5@2759,3A0FB@33154,3BPYT@33208
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size798
Cds size375
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930488.4831932-CDS-H-paniculata_contig5068:13667..140421622930488.4831932-CDS-H-paniculata_contig5068:13667..14042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5068 13668..14042 -
1691481314.821128-CDS-H-paniculata_contig5068:13667..140421691481314.821128-CDS-H-paniculata_contig5068:13667..14042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5068 13668..14042 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930488.5015733-UTR-H-paniculata_contig5068:14042..144651622930488.5015733-UTR-H-paniculata_contig5068:14042..14465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5068 14043..14465 -
1691481314.8351822-UTR-H-paniculata_contig5068:14042..144651691481314.8351822-UTR-H-paniculata_contig5068:14042..14465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5068 14043..14465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5068.12343.1prot_H-paniculata_contig5068.12343.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5068 13668..14042 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5068.12343.1

>prot_H-paniculata_contig5068.12343.1 ID=prot_H-paniculata_contig5068.12343.1|Name=mRNA_H-paniculata_contig5068.12343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MGTPSAPILANITLAISERRRLEKHLHIYLFRRYIDDIFCIVKDTERVTY
QFLSSLYQELDLKLKFDMTQDKIEFLDLIVYKGIRWRIDGRLDLRTHQKK
LNLYSYLPYRSAHPIHCKTGFMTGE
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mRNA from alignment at H-paniculata_contig5068:13668..14465-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5068.12343.1 ID=mRNA_H-paniculata_contig5068.12343.1|Name=mRNA_H-paniculata_contig5068.12343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=798bp|location=Sequence derived from alignment at H-paniculata_contig5068:13668..14465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCCAGAATTCTATATTCTGCCCAAAATCCATAAACCTATCACAGTAGG TAGACCGATTGCAGCAGGACATAGCTTTGCCACTACCCCATGGTCAGCAT TGCTATGTCACTGGCTTCAGCCAGTACTTTATAATCTCATTACTGTGCTG AAAGATAGTCGTACACTAATCCGAGACATGGAATCTGCTCATTTTGATAA CAGATCTGTCTGGACACTAGTCACTGCAGATGTTGTAAGCCTCTACCCAT CACTGAATGTGCAGCAAGTTATCACGAACACAATGATAGCTACGCGAGAA CAGTATGGTCCCAATTGGCCATCTCAAATATACCATTTTCTGGAACGAAT TTTGAACTTCGTACTTAAAAATGGGTATGTACAATTTGATGGTAAGTTAT TCCTATAACACAAAGGCCTTGTAATGGGAACCCCAAGCGCACCCATCTTG GCTAATATCACACTAGCGATAAGTGAACGTCGACGACTCGAAAAACACCT ACACATATACCTTTTTCGAAGGTATATTGATGACATTTTCTGTATAGTAA AAGACACGGAACGAGTAACATACCAATTCTTGTCATCATTATACCAAGAA CTCGACCTGAAATTAAAATTTGATATGACACAGGACAAGATAGAGTTCTT GGATCTAATAGTATACAAAGGTATTAGATGGAGGATAGATGGGCGACTTG ACCTACGAACCCATCAGAAGAAGCTCAACTTATATTCTTACCTCCCCTAT CGCTCAGCACACCCCATTCACTGTAAAACAGGTTTCATGACAGGGGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig5068:13668..14465-

>mRNA_H-paniculata_contig5068.12343.1 ID=mRNA_H-paniculata_contig5068.12343.1|Name=mRNA_H-paniculata_contig5068.12343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig5068:13668..14465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAACCCCAAGCGCACCCATCTTGGCTAATATCACACTAGCGATAAG
TGAACGTCGACGACTCGAAAAACACCTACACATATACCTTTTTCGAAGGT
ATATTGATGACATTTTCTGTATAGTAAAAGACACGGAACGAGTAACATAC
CAATTCTTGTCATCATTATACCAAGAACTCGACCTGAAATTAAAATTTGA
TATGACACAGGACAAGATAGAGTTCTTGGATCTAATAGTATACAAAGGTA
TTAGATGGAGGATAGATGGGCGACTTGACCTACGAACCCATCAGAAGAAG
CTCAACTTATATTCTTACCTCCCCTATCGCTCAGCACACCCCATTCACTG
TAAAACAGGTTTCATGACAGGGGAAATGGGAACCCCAAGCGCACCCATCT
TGGCTAATATCACACTAGCGATAAGTGAACGTCGACGACTCGAAAAACAC
CTACACATATACCTTTTTCGAAGGTATATTGATGACATTTTCTGTATAGT
AAAAGACACGGAACGAGTAACATACCAATTCTTGTCATCATTATACCAAG
AACTCGACCTGAAATTAAAATTTGATATGACACAGGACAAGATAGAGTTC
TTGGATCTAATAGTATACAAAGGTATTAGATGGAGGATAGATGGGCGACT
TGACCTACGAACCCATCAGAAGAAGCTCAACTTATATTCTTACCTCCCCT
ATCGCTCAGCACACCCCATTCACTGTAAAACAGGTTTCATGACAGGGGAA
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