mRNA_H-paniculata_contig50669.12337.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50669.12337.1
Unique NamemRNA_H-paniculata_contig50669.12337.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig50669.12337.1 vs. uniprot
Match: D8LHI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI4_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.280e-14
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 GILGLKRGAILVSLCWVAILLHVIDRKWWQAAAWCIMSAVLSIFGL 138
            GILGLKRGAILVSLCWVA+L+H+IDRKWWQA+ W ++SA  +  G+
Sbjct:  436 GILGLKRGAILVSLCWVAMLVHIIDRKWWQASVWAVISACFTAVGI 481
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BLAST of mRNA_H-paniculata_contig50669.12337.1 vs. uniprot
Match: A0A7S2UIB7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UIB7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.310e-8
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 GILGLKRGAILVSLCWVAILLHVIDRKWWQAAAWCIMSAVLSIFGL 138
            G+L  KRGA+LVS  WVA+L+ VIDRKW +AA W  M A+ ++FG+
Sbjct:   58 GLLAWKRGALLVSFVWVAMLVSVIDRKWKKAAVWSTMGALFALFGI 103
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BLAST of mRNA_H-paniculata_contig50669.12337.1 vs. uniprot
Match: A0A1Z5K0X1_FISSO (Putative MFS transporter, AGZA family, xanthine/uracil permease n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0X1_FISSO)

HSP 1 Score: 55.1 bits (131), Expect = 1.460e-7
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 GILGLKRGAILVSLCWVAILLHVIDRKWWQAAAWCIMSAVLSIFGL 138
            GIL  KRGA+LVS  WVAIL+ VIDR+W +A  W +++A  S+FG+
Sbjct:  540 GILAWKRGALLVSFVWVAILVSVIDRQWNKATFWSLLAAGFSLFGI 585
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BLAST of mRNA_H-paniculata_contig50669.12337.1 vs. uniprot
Match: A0A7S2WT88_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WT88_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.000e-5
Identity = 20/46 (43.48%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 GILGLKRGAILVSLCWVAILLHVIDRKWWQAAAWCIMSAVLSIFGL 138
            G + + + ++L+SL   + L+++IDRK+ QAAAWC++SA+ S+FG+
Sbjct:  454 GYVAMSKSSLLLSLLVTSTLVYIIDRKFLQAAAWCLISALFSVFGI 499
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50669.12337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LHI4_ECTSI1.280e-1469.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UIB7_9STRA1.310e-856.52Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1Z5K0X1_FISSO1.460e-756.52Putative MFS transporter, AGZA family, xanthine/ur... [more]
A0A7S2WT88_9STRA3.000e-543.48Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50669contigH-paniculata_contig50669:950..1087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog2880.D8LHI4
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.purine nucleobase transmembrane transporter activity
EggNOG OGs2QRYA@2759,COG2252@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930488.02007-CDS-H-paniculata_contig50669:949..10871622930488.02007-CDS-H-paniculata_contig50669:949..1087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50669 950..1087 -
1691481314.603648-CDS-H-paniculata_contig50669:949..10871691481314.603648-CDS-H-paniculata_contig50669:949..1087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50669 950..1087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50669.12337.1prot_H-paniculata_contig50669.12337.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50669 950..1087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50669.12337.1

>prot_H-paniculata_contig50669.12337.1 ID=prot_H-paniculata_contig50669.12337.1|Name=mRNA_H-paniculata_contig50669.12337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
GILGLKRGAILVSLCWVAILLHVIDRKWWQAAAWCIMSAVLSIFGL
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mRNA from alignment at H-paniculata_contig50669:950..1087-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50669.12337.1 ID=mRNA_H-paniculata_contig50669.12337.1|Name=mRNA_H-paniculata_contig50669.12337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig50669:950..1087- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCATCCTGGGCTTGAAGCGCGGCGCCATCCTGGTGTCTCTCTGCTGGGT
GGCGATCCTGCTGCACGTCATTGACCGCAAGTGGTGGCAAGCAGCGGCGT
GGTGCATCATGTCGGCCGTCTTGTCTATATTTGGCTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig50669:950..1087-

>mRNA_H-paniculata_contig50669.12337.1 ID=mRNA_H-paniculata_contig50669.12337.1|Name=mRNA_H-paniculata_contig50669.12337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig50669:950..1087- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCATCCTGGGCTTGAAGCGCGGCGCCATCCTGGTGTCTCTCTGCTGGGT
GGCGATCCTGCTGCACGTCATTGACCGCAAGTGGTGGCAAGCAGCGGCGT
GGTGCATCATGTCGGCCGTCTTGTCTATATTTGGCTTAGGCATCCTGGGC
TTGAAGCGCGGCGCCATCCTGGTGTCTCTCTGCTGGGTGGCGATCCTGCT
GCACGTCATTGACCGCAAGTGGTGGCAAGCAGCGGCGTGGTGCATCATGT
CGGCCGTCTTGTCTATATTTGGCTTA
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