mRNA_H-paniculata_contig506.12325.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig506.12325.1
Unique NamemRNA_H-paniculata_contig506.12325.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig506.12325.1 vs. uniprot
Match: D7FYU7_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYU7_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 4.950e-48
Identity = 90/131 (68.70%), Postives = 107/131 (81.68%), Query Frame = 1 
Query:    1 QLLFTNCIMETINFGRGGLQARLQLLQDNSTEAVYRAVSRGLFERHKLLFAFMLCTGILRASGKVSNVEWMLLLQGPRADFRRRTSRGKTNDQNTKKNIENPASATLDERSWQTLKHADATVASMSGICAS 393
            QLLFTNCI++T++ G GGLQARLQLL + STEAVYRAVSRGLFERHKL FAFMLCTGILRA G ++NVEWMLLLQG   + RRRTSRG+ +DQ +  N+ NP S+ LDERSW+TL+ A+  + SM GIC S
Sbjct: 3324 QLLFTNCIVDTLDAGNGGLQARLQLLLEKSTEAVYRAVSRGLFERHKLPFAFMLCTGILRAKGDITNVEWMLLLQGAGPNLRRRTSRGRESDQRS--NVSNPDSSILDERSWKTLQQAEIAIPSMKGICKS 3452
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BLAST of mRNA_H-paniculata_contig506.12325.1 vs. uniprot
Match: A0A1B6IMN5_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6IMN5_9HEMI)

HSP 1 Score: 73.6 bits (179), Expect = 3.100e-14
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   55 LQARLQLLQDNSTEAVYRAVSRGLFERHKLLFAFMLCTGILRASGKVSNVEWMLLLQG 228
            L+ARLQ+L    T A+Y  VSRGLFERHKL+F+FMLCT I + +G +S  EW  LL+G
Sbjct:   40 LEARLQILLQEITLAIYTNVSRGLFERHKLVFSFMLCTSIFKNAGSISEAEWSFLLRG 97
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BLAST of mRNA_H-paniculata_contig506.12325.1 vs. uniprot
Match: UPI001EEAE949 (LOW QUALITY PROTEIN: dynein axonemal heavy chain 6-like n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EEAE949)

HSP 1 Score: 73.6 bits (179), Expect = 1.260e-12
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   55 LQARLQLLQDNSTEAVYRAVSRGLFERHKLLFAFMLCTGILRASGKVSNVEWMLLLQG 228
            L+ARLQ+L    T A+Y  VSRGLFERHKL+F+FMLCT I + +G +S  EW  LL+G
Sbjct:   93 LEARLQILLQEITLAIYTNVSRGLFERHKLVFSFMLCTSIFKNAGSISEAEWSFLLRG 150
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BLAST of mRNA_H-paniculata_contig506.12325.1 vs. uniprot
Match: UPI001F04F069 (dynein axonemal heavy chain 6-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04F069)

HSP 1 Score: 73.2 bits (178), Expect = 1.840e-12
Identity = 38/74 (51.35%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:    7 LFTNCIMETINFGRGGLQARLQLLQDNSTEAVYRAVSRGLFERHKLLFAFMLCTGILRASGKVSNVEWMLLLQG 228
            LF  CI ++       L  RLQ+L DN T  V+  VSRGLFERHK++F+FMLC  ILR  G +SN EW   L+G
Sbjct: 3297 LFNTCIEKSEK--SDDLDKRLQILLDNCTNTVFENVSRGLFERHKIVFSFMLCAEILRERGVISNNEWNYFLRG 3368
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BLAST of mRNA_H-paniculata_contig506.12325.1 vs. uniprot
Match: A0A7R9S9Z7_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Argulus foliaceus TaxID=509924 RepID=A0A7R9S9Z7_9CRUS)

HSP 1 Score: 72.4 bits (176), Expect = 3.340e-12
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:    7 LFTNCIMETINFGRGGLQARLQLLQDNSTEAVYRAVSRGLFERHKLLFAFMLCTGILRASGKVSNVEWMLLLQGP 231
            LF NCI  +       LQ RL++L+ NST+ VY  VSRGLFERHK++F+F LC  I+R +  +  +EW   L+GP
Sbjct: 1666 LFVNCIEASEK--TDDLQKRLEILKTNSTKVVYTNVSRGLFERHKMIFSFSLCVKIMRQNDTIPALEWNYFLRGP 1738
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BLAST of mRNA_H-paniculata_contig506.12325.1 vs. uniprot
Match: A0A834MFK7_RHYFE (Uncharacterized protein n=1 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834MFK7_RHYFE)

HSP 1 Score: 72.4 bits (176), Expect = 3.420e-12
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    7 LFTNCIMETINFGRGGLQARLQLLQDNSTEAVYRAVSRGLFERHKLLFAFMLCTGILRASGKVSNVEWMLLLQGP 231
            +F N I+ T       L+ RL+ L+  ST AVY  +SRGLFERHKL+F+FMLC  IL+  G +S+ +W  LL+GP
Sbjct: 3263 VFNNVIVTTPK--EAVLEKRLETLRAESTLAVYTIISRGLFERHKLVFSFMLCVAILQQDGVISDGQWSFLLRGP 3335
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BLAST of mRNA_H-paniculata_contig506.12325.1 vs. uniprot
Match: A0A1B6FCF1_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6FCF1_9HEMI)

HSP 1 Score: 72.0 bits (175), Expect = 4.420e-12
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   55 LQARLQLLQDNSTEAVYRAVSRGLFERHKLLFAFMLCTGILRASGKVSNVEWMLLLQG 228
            L ARLQ+L    T A+Y  VSRGLFERHKL+F+FMLCT I + +G +S  EW  LL+G
Sbjct:  271 LDARLQILLREITLAIYTNVSRGLFERHKLVFSFMLCTSIFKNAGSISEAEWSFLLRG 328
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BLAST of mRNA_H-paniculata_contig506.12325.1 vs. uniprot
Match: UPI000A2A4E3E (LOW QUALITY PROTEIN: dynein heavy chain 6, axonemal-like n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A4E3E)

HSP 1 Score: 71.6 bits (174), Expect = 6.360e-12
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:    7 LFTNCIMETINFGRGGLQARLQLLQDNSTEAVYRAVSRGLFERHKLLFAFMLCTGILRASGKVSNVEWMLLLQG 228
            LF NCI  +       L+ RL++L +N T+ VY  V+RGLFERHKL+F+FMLC  I+R  G +++ EW  LL+G
Sbjct: 3452 LFNNCIENSEK--ADDLEKRLEILLNNCTKTVYVNVARGLFERHKLVFSFMLCGDIMRQQGIITDAEWNYLLRG 3523
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BLAST of mRNA_H-paniculata_contig506.12325.1 vs. uniprot
Match: A0A7R9VW34_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VW34_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 9.550e-12
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    7 LFTNCIMETINFGRGG-LQARLQLLQDNSTEAVYRAVSRGLFERHKLLFAFMLCTGILR--ASGKVSNVEWMLLLQGP 231
            LF++CI  +   G+   +  RL LL D  T  ++  VSRGLFE HKLL++F+LCT +LR  +SGK+S+ EW  L++GP
Sbjct:   16 LFSHCIERS---GKADDVPTRLLLLSDFLTAFIFNNVSRGLFEEHKLLYSFLLCTSVLRHTSSGKISDAEWNFLVRGP 90
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BLAST of mRNA_H-paniculata_contig506.12325.1 vs. uniprot
Match: N6UMD3_DENPD (Uncharacterized protein (Fragment) n=3 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6UMD3_DENPD)

HSP 1 Score: 70.9 bits (172), Expect = 1.180e-11
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:   55 LQARLQLLQDNSTEAVYRAVSRGLFERHKLLFAFMLCTGILRASGKVSNVEWMLLLQGP 231
            L+ RL  L+   T AVY  +SRGLFERHKL+F+FMLC  I++  G++S V+W  LL+GP
Sbjct: 3286 LEKRLNTLRVEITLAVYTIISRGLFERHKLVFSFMLCIAIMQQEGRISEVQWSFLLRGP 3344
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig506.12325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYU7_ECTSI4.950e-4868.70Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A1B6IMN5_9HEMI3.100e-1458.62Uncharacterized protein (Fragment) n=1 Tax=Homalod... [more]
UPI001EEAE9491.260e-1258.62LOW QUALITY PROTEIN: dynein axonemal heavy chain 6... [more]
UPI001F04F0691.840e-1251.35dynein axonemal heavy chain 6-like n=1 Tax=Xenia s... [more]
A0A7R9S9Z7_9CRUS3.340e-1248.00Hypothetical protein (Fragment) n=1 Tax=Argulus fo... [more]
A0A834MFK7_RHYFE3.420e-1249.33Uncharacterized protein n=1 Tax=Rhynchophorus ferr... [more]
A0A1B6FCF1_9HEMI4.420e-1258.62Uncharacterized protein (Fragment) n=1 Tax=Cuerna ... [more]
UPI000A2A4E3E6.360e-1248.65LOW QUALITY PROTEIN: dynein heavy chain 6, axonema... [more]
A0A7R9VW34_9CHLO9.550e-1247.44Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
N6UMD3_DENPD1.180e-1154.24Uncharacterized protein (Fragment) n=3 Tax=Dendroc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig506contigH-paniculata_contig506:200..2112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.0
Seed ortholog evalue3.5e-37
Seed eggNOG ortholog2880.D7FYU7
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Ec32 ortholog descriptionDynein heavy chain, domain-2
Ec32 orthologEc-19_002540.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons3
Model size393
Cds size369
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig506.12325.1prot_H-paniculata_contig506.12325.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig506 224..2112 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930485.1036947-UTR-H-paniculata_contig506:199..2231622930485.1036947-UTR-H-paniculata_contig506:199..223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig506 200..223 +
1691481313.1576831-UTR-H-paniculata_contig506:199..2231691481313.1576831-UTR-H-paniculata_contig506:199..223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig506 200..223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930485.121331-CDS-H-paniculata_contig506:223..3911622930485.121331-CDS-H-paniculata_contig506:223..391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig506 224..391 +
1691481313.1798458-CDS-H-paniculata_contig506:223..3911691481313.1798458-CDS-H-paniculata_contig506:223..391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig506 224..391 +
1622930485.137626-CDS-H-paniculata_contig506:764..9021622930485.137626-CDS-H-paniculata_contig506:764..902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig506 765..902 +
1691481313.1949842-CDS-H-paniculata_contig506:764..9021691481313.1949842-CDS-H-paniculata_contig506:764..902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig506 765..902 +
1622930485.1542768-CDS-H-paniculata_contig506:2049..21121622930485.1542768-CDS-H-paniculata_contig506:2049..2112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig506 2050..2112 +
1691481313.2062466-CDS-H-paniculata_contig506:2049..21121691481313.2062466-CDS-H-paniculata_contig506:2049..2112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig506 2050..2112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig506.12325.1

>prot_H-paniculata_contig506.12325.1 ID=prot_H-paniculata_contig506.12325.1|Name=mRNA_H-paniculata_contig506.12325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
METINFGRGGLQARLQLLQDNSTEAVYRAVSRGLFERHKLLFAFMLCTGI
LRASGKVSNVEWMLLLQGPRADFRRRTSRGKTNDQNTKKNIENPASATLD
ERSWQTLKHADATVASMSGICAS
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mRNA from alignment at H-paniculata_contig506:200..2112+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig506.12325.1 ID=mRNA_H-paniculata_contig506.12325.1|Name=mRNA_H-paniculata_contig506.12325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1913bp|location=Sequence derived from alignment at H-paniculata_contig506:200..2112+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTTCTCTTCACCAACTGCATCATGGAGACTATAAACTTCGGGCGTGG
AGGGTTGCAGGCCAGACTGCAACTTCTACAAGACAACAGCACGGAGGCTG
TGTACCGTGCGGTGTCGAGAGGACTCTTCGAGCGACACAAGCTTCTATTT
GCTTTCATGCTTTGCACTGGCATTCTTCGAGCCTCGGGAAAGGTGTGACT
CACCATGGCCAAAGTGTAGTATTTTTCTCTCTCCTTGATGGCATACAAAT
CAAGTTGTCCGTCGACGTATGATCTCTACCGCGAAGCGAAACTTCCTCGA
TACGAACCAACCTTCATCGTATTTATTCTCAACTGCACAGACGCAATGTG
GCGTATGAGATATCGCACTGTTGACGACACAACTTCAATCCCTACACGCC
GTGTATTCGTATGAAACTTCGCAGAATTGTACTTCGGAAATGTCTATTTC
AAGTGACCTCACTAGAGTGTATAAGCGGCAAGGTGATCCCGCGTGGCGCT
GCGTTTCCCCTCCCCCATTGCTCTATCTGCGCACCTGCGGTGTGGTTCTA
CTCCGGTTTCAATAGGTATCAAATGTCGAGTGGATGCTGTTGCTGCAAGG
ACCGCGGGCAGACTTCCGACGACGCACGAGTCGAGGGAAGACAAACGATC
AGAACACAAAAAAGAATATCGAAAATCCGGCCTCAGCGACGTTGGATGAA
AGGGTGAGTCAACTCTCAAACTCTGATATACGTCGTAATTCGAGAGGTGA
CAGTGCCCAGCTTCGGCGCACTCTCCCGACGCAGCTGTAGCCGCCTACAG
TACATTTTGTTTTTCTCACACATCGATTCAGGAGAAAAGGACTATATAAT
CGAATTGATAGACGTACCCTTTACGCATTGGTCACATCCCGGGTTCGATC
GCCCCCAGCAGTTTAGAGCAACTAAAGAAAACGGTATAATGATTTGTAGA
CAGCCCAATTCCGATAGGCTGGAACAGAAAGAACTCATTCATTCTTCAAT
ACAACTACAGATATCTATATACACAATTTGTTTTGTCATATTCCGACTCC
CGGTATGCTGGAATATATGCAAGCGCAAGCTGGCCACAAAAAGCCTGCAG
CGGAAGACCATCCCCAGCTGCGCAATACTCGGCGTAGTGTGGGGTCCGGA
GGTGTCTCACACACTGCTGAGACTAACGATCACACTTGCTGTCGGCTTGT
TAACAACCCTAAGGGTTTGGGGGCAGGGCTCAGGGGATAGCGATGCACGG
TGGGGGGCAAGGTCGCCCAGATATCATCCTTTTTCTACCATTGCGGGTCC
TACCTGAGAATGATACCTCAAAATGCATATTAATCCCATACAAAATACAA
CCATCTGCACTACTCGAGTTGTCCCAAAGTATATTTTGGAGACATAGTAC
CCCCCAGCGCACCAATCGTTTGGGATCTTTACCGCAAGAACAATCGTGTA
TATTCATCAAGTAGTAAAGATTTCAAGCATGGATAAGGGTAACAGGATTA
CCAAGTGGCGCGCTAGGGTTCGATCCCTCGAATGCTCGACCGGGCCAAAA
TGCGCCCGAGGTTACTCTACTAGTGTGGATGCTCATCCTTCCCCCAAATG
TACGCGAAAATACGCTGGTAGTGTGGATACTTTACCTTCCCGAAGATGTA
CTCGAAGTTACGCTAACTGTGTGAATACTCAGCTTGCTCCATGACACTCT
CATCGTATTGTACTATTTTGATCCATGTGTCAATACTCAAGCCATGCCTC
CCCAACGTTCCATTGCTGACAGGGGAAACGAACAATTTCTGAGAGGGGAG
AACATTAAGTTGATCCTTACTGCGTCTTTTGCGATTGATTCGTCCGGTAG
AGTTGGCAAACGCTAAAACATGCAGACGCCACGGTTGCGTCCATGAGTGG
AATCTGCGCATCG
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Coding sequence (CDS) from alignment at H-paniculata_contig506:200..2112+

>mRNA_H-paniculata_contig506.12325.1 ID=mRNA_H-paniculata_contig506.12325.1|Name=mRNA_H-paniculata_contig506.12325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig506:200..2112+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGACTATAAACTTCGGGCGTGGAGGGTTGCAGGCCAGACTGCAACT
TCTACAAGACAACAGCACGGAGGCTGTGTACCGTGCGGTGTCGAGAGGAC
TCTTCGAGCGACACAAGCTTCTATTTGCTTTCATGCTTTGCACTGGCATT
CTTCGAGCCTCGGGAAAGATGGAGACTATAAACTTCGGGCGTGGAGGGTT
GCAGGCCAGACTGCAACTTCTACAAGACAACAGCACGGAGGCTGTGTACC
GTGCGGTGTCGAGAGGACTCTTCGAGCGACACAAGCTTCTATTTGCTTTC
ATGCTTTGCACTGGCATTCTTCGAGCCTCGGGAAAGGTATCAAATGTCGA
GTGGATGCTGTTGCTGCAAGGACCGCGGGCAGACTTCCGACGACGCACGA
GTCGAGGGAAGACAAACGATCAGAACACAAAAAAGAATATCGAAAATCCG
GCCTCAGCGACGTTGGATGAAAGGGTATCAAATGTCGAGTGGATGCTGTT
GCTGCAAGGACCGCGGGCAGACTTCCGACGACGCACGAGTCGAGGGAAGA
CAAACGATCAGAACACAAAAAAGAATATCGAAAATCCGGCCTCAGCGACG
TTGGATGAAAGGAGTTGGCAAACGCTAAAACATGCAGACGCCACGGTTGC
GTCCATGAGTGGAATCTGCGCATCGAGTTGGCAAACGCTAAAACATGCAG
ACGCCACGGTTGCGTCCATGAGTGGAATCTGCGCATCG
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