mRNA_H-paniculata_contig505.12314.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig505.12314.1
Unique NamemRNA_H-paniculata_contig505.12314.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig505.12314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig505contigH-paniculata_contig505:34790..36789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1746
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig505.12314.1prot_H-paniculata_contig505.12314.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig505 35696..36043 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930483.861178-UTR-H-paniculata_contig505:34789..356951622930483.861178-UTR-H-paniculata_contig505:34789..35695Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig505 34790..35695 -
1691481312.601801-UTR-H-paniculata_contig505:34789..356951691481312.601801-UTR-H-paniculata_contig505:34789..35695Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig505 34790..35695 -
1622930483.8906522-UTR-H-paniculata_contig505:36043..362561622930483.8906522-UTR-H-paniculata_contig505:36043..36256Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig505 36044..36256 -
1691481312.6237056-UTR-H-paniculata_contig505:36043..362561691481312.6237056-UTR-H-paniculata_contig505:36043..36256Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig505 36044..36256 -
1622930483.9076848-UTR-H-paniculata_contig505:36510..367891622930483.9076848-UTR-H-paniculata_contig505:36510..36789Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig505 36511..36789 -
1691481312.6334164-UTR-H-paniculata_contig505:36510..367891691481312.6334164-UTR-H-paniculata_contig505:36510..36789Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig505 36511..36789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930483.8790605-CDS-H-paniculata_contig505:35695..360431622930483.8790605-CDS-H-paniculata_contig505:35695..36043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig505 35696..36043 -
1691481312.61247-CDS-H-paniculata_contig505:35695..360431691481312.61247-CDS-H-paniculata_contig505:35695..36043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig505 35696..36043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig505.12314.1

>prot_H-paniculata_contig505.12314.1 ID=prot_H-paniculata_contig505.12314.1|Name=mRNA_H-paniculata_contig505.12314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MTRDEGNAAQVQSLGERQGSGTAEEIYLSGDKTMNNAGSVAPALRGVRSA
PEVGKQASADVAELVSPPDVTAILTPVPKNWLPPAILVFCFFGRVSHSEG
IEISQEPSSGEAKAR*
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mRNA from alignment at H-paniculata_contig505:34790..36789-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig505.12314.1 ID=mRNA_H-paniculata_contig505.12314.1|Name=mRNA_H-paniculata_contig505.12314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2000bp|location=Sequence derived from alignment at H-paniculata_contig505:34790..36789- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACAACAACCAGGCTTCTTTTATTTGCTACTCGGAGCCCTTCCTTTCCA
CTCGTCACTACATTCCACACTGTTATAAGCTCAGCTCTACCCACTTTACC
GATTAGAATCACGCAGCGAATTTATTGCCATGCAGTAGCCTCTCCTTATT
TTCGCCCACCTGACTCATTCGCGCAGCACCTGGGCAGAGGCTATATGACA
TCACGTCGGACACACTATGGCGCCGGTTTTCAGACAATGCGAGGGAGGTC
AGGAACGTCATACACCCAATCTATGACAGGTATGGCACTACACGCAGGCC
AATTAAATACAGGTTGGGGTGCAGCATTCGATGGCTTGATGATTAAACAA
CATGCCCTAGTGGCACGCCACGGTTTTCCAGCGACTAAGTGCCTCACGAT
TCCATCTGGGTGGAAGTTCCGATCACCAAAACCCATAGTTGGCTTATCTT
TATATAAACGTCCACGCAAAGATGACTCGTACTCCGTGTGGAGCCAGGGA
CCTAAGACACCGACTACTTGGGTGTTATTCCAGGTCGCTTTACTTCCCCC
CGGTCAGGTACACGCAGGAGAACAGCACCCTTACGTCGGATAGACAGTAT
CCAGATATGATGGGGTACATCCGCCAGAGAATATGACTGCAATTGCAGAT
CTCGAAGGAGCGGGCGAAGAAGAAGGCAGTGACGAATATTAATGACAACG
GGGTAAAAAACCCCAACAAACCACGACTCGGAATGCGACGCCTGTGATGA
CACGCGACGAAGGGAACGCGGCGCAGGTGCAGTCGTTGGGAGAACGTCAA
GGCAGCGGCACCGCAGAGGAGATTTATTTGAGTGGAGACAAGACGATGAA
CAATGCTGGGTCCGTGGCACCAGCGTTACGTGGGGTGAGATCAGCACCTG
AGGTGGGGAAGCAAGCGAGCGCCGACGTAGCCGAGCTTGTTTCCCCTCCT
GATGTCACCGCCATACTGACTCCCGTGCCGAAGAATTGGCTGCCTCCCGC
TATCCTTGTATTCTGCTTCTTCGGCAGGGTTAGTCACAGCGAGGGTATCG
AAATCAGCCAAGAACCCTCAAGTGGTGAAGCGAAAGCTAGGTGAGGAAGC
AGAATCCGAATGCGACGAGATTGGGGGCGAGAATTCTCCCGCACACGCAG
CGTCCGCGGCAAAGGTCGGTTTGGGAGATTTTTTCGATTGCGTCATTGCG
CCTGATGAAAGGCCCGGGTGAATCTTCCAGCCCAAGGGAGTTGAAGCAAC
GCCGAAGGGATGAAGACGAGGGGTCTAGGGCAATGGCTGGAAGAGTACAC
TGGATTTTAACTGAGTCAATCTTGCGTAACCTTCATGACATGTCATTTTC
AGGGCTGGGAACGGTAAGGATTTTCGAAAACGGGGTGAAACGGTAACGGT
GGCACAAGCACGGTAATTAATGGCACGGTAAATGGTAAACAAATTACGCG
GTAAGTTTTGGGTGGAGCGCCGTATCTACGGTAATTAACGGGACGGTAAT
TTTTCCGCAGTAAATTTTGGGCGGAGCGCCATCTTCACGGTATTTGATGG
AATGGAATATGAAAACGATTTTTTCATGGCAACGAAACAGTAAATAAAGC
GTGGCCTGAAGGGTATGAAGCGATAAATTGGTCGCTGGCACAGTTATACA
CTACTGTAAATCCGTTGGCGGCACAGGGAAGTTTGGGACAATAGTTTTTG
AGGCAAAGAGAAGGGAGCGGTGTCGTTGTGGCGGTCCACAAAAATGGGTA
ACTGGATAAAAAACAATCATGTTGACGCCTGATGGTACCAGTTCCTGGCG
TATAGTCGTCGAAAATTGTTGACGCTTCAAAGTAAAATTGTAGGTACCTC
CATGGCATGGAAATATGGTGCCGGCACGGCAATTAATTGACGGTAAGCCG
CTGGCAAGAAAACATATGGACGGTGATTCACCGGCACGGTAACAAATGGT
AACGGTAAATGTTAAGCGAATTATCACGGTATTGAACGGTTCCCGTTACC
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Coding sequence (CDS) from alignment at H-paniculata_contig505:34790..36789-

>mRNA_H-paniculata_contig505.12314.1 ID=mRNA_H-paniculata_contig505.12314.1|Name=mRNA_H-paniculata_contig505.12314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig505:34790..36789- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACACGCGACGAAGGGAACGCGGCGCAGGTGCAGTCGTTGGGAGAACG
TCAAGGCAGCGGCACCGCAGAGGAGATTTATTTGAGTGGAGACAAGACGA
TGAACAATGCTGGGTCCGTGGCACCAGCGTTACGTGGGGTGAGATCAGCA
CCTGAGGTGGGGAAGCAAGCGAGCGCCGACGTAGCCGAGCTTGTTTCCCC
TCCTGATGTCACCGCCATACTGACTCCCGTGCCGAAGAATTGGCTGCCTC
CCGCTATCCTTGTATTCTGCTTCTTCGGCAGGGTTAGTCACAGCGAGGGT
ATCGAAATCAGCCAAGAACCCTCAAGTGGTGAAGCGAAAGCTAGGTGAAT
GACACGCGACGAAGGGAACGCGGCGCAGGTGCAGTCGTTGGGAGAACGTC
AAGGCAGCGGCACCGCAGAGGAGATTTATTTGAGTGGAGACAAGACGATG
AACAATGCTGGGTCCGTGGCACCAGCGTTACGTGGGGTGAGATCAGCACC
TGAGGTGGGGAAGCAAGCGAGCGCCGACGTAGCCGAGCTTGTTTCCCCTC
CTGATGTCACCGCCATACTGACTCCCGTGCCGAAGAATTGGCTGCCTCCC
GCTATCCTTGTATTCTGCTTCTTCGGCAGGGTTAGTCACAGCGAGGGTAT
CGAAATCAGCCAAGAACCCTCAAGTGGTGAAGCGAAAGCTAGGTGA
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