mRNA_H-paniculata_contig5029.12281.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5029.12281.1
Unique NamemRNA_H-paniculata_contig5029.12281.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5029.12281.1 vs. uniprot
Match: A0A836C8Q3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Q3_9STRA)

HSP 1 Score: 176 bits (447), Expect = 2.270e-44
Identity = 161/516 (31.20%), Postives = 208/516 (40.31%), Query Frame = 1 
Query:  517 DKLRSYGLAGLLAYGVMNQIYYSTAFAMLWLGPMGAVATAAPAAAGFAAWMAVSSKQLAKVMAVVWVGSQATKPLRYLLAILLAPAADILLTSTQQRLRLPTRQRAFFLLCAALLSTTASFCTGTVVYATLRAATSQTTQASSSVILLAHGGLCRRLRSSSFSRDSRLNELEKVATSTQRTGLLQEISEASRRGYGWRVPTRKTAEIGVAAESTGAPSSDNKRRSSLGLGHTREVDSERQLNDGPNDDADRVPQRSRTTGQTATXXXXXRVGAKGSGAGIIRKRRTKRITPQKAADLNPPPQDNIHGWQEQPKHLLGFWKVGAAVALPDQTENAAPEAIAXXXXXXXXXXXXXXXXXXXXXXYPEIPSTVGPPSPPVKASVLEEVYALEADGGFGNRETAEMEGLDLGSDILHHIQYVVLKRDGSLKAGPARLGVVPRAWRFTPANRRLLFEVDVPGRGVTLRYSAKLKRVPGQYTMAKGLVRVRQMSDTIGETELPSSSRKWPKLAEFEMTMQLK 2064
            +KLRSYG AG+LAYG +N +YYS AFA+ W G            AG  A +A ++K   KV A+VW GSQ TK  R   A+LLAP A+  L + + RLRLP+++ AF LL   L+S T +     VV   L AA                                            +RT ++            + +P R +     AA  T +                                            Q A        G +G   G++R+   KR++  K  DLN PPQ N HGWQEQPK LLG+W V  AV                                                                ADG       AE +GL    D    I YVVLKRDG+ K GP   G V R WRFTPANRR++FEVDVP + VTLRYS +LKR   ++T A G VRVR++S       LP + + WP +AE  +   L+
Sbjct:   71 NKLRSYGFAGILAYGALNGVYYSIAFALAWYGTT--------RGAGAPAGVAAAAKLFFKVFALVWAGSQVTKVFRLGGALLLAPVAERALCAARARLRLPSQRAAFALLATLLVSATLALFGAQVVLTGLLAA--------------------------------------------RRTSVV---------AAAFALPPRVSGSFAAAACVTVSXXXXXXXARXXXXXXXXXXX------------------------QGACAAGTGEGGEQGGEGGVVRR---KRLSRTKLLDLNQPPQMNRHGWQEQPKFLLGYWNVTEAVV---------------------------------------------------------------ADG-------AEGKGLAGFQDC---IGYVVLKRDGTFKTGPYEGGGVARRWRFTPANRRIVFEVDVPAKEVTLRYSLRLKRAARKFTRAYGNVRVRRLSPNAPSKALPPTKQGWPVVAEVSLEKSLR 425
[Close]
BLAST of mRNA_H-paniculata_contig5029.12281.1 vs. uniprot
Match: A0A6H5L1Z4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z4_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.700e-22
Identity = 68/128 (53.12%), Postives = 86/128 (67.19%), Query Frame = 1 
Query:  535 GLAGLLAYGVMNQIYYSTAFAMLWLGPMGAVATAAPAAAGFAAWMAVSSKQLAKVMAVVWVGSQATKPLRYLLAILLAPAADILLTSTQQRLRLPTRQRAFFLLCAALLSTTASFCTGTVVYATLRAA 918
            G AGL++YGV+N ++YS   A + LGPMGAV    PA +G    +A S KQL KV+ +VW+GSQATKPLR  LA L APAAD L+ STQ+RL L  ++ A  LL AA+  +TA+FC   V Y   RAA
Sbjct:  120 GTAGLVSYGVLNGLWYSGGIAFVMLGPMGAV----PAGSGIEGTIAASVKQLGKVIGLVWLGSQATKPLRLALAALTAPAADRLIASTQRRLGL-NKKDAVSLLVAAIFGSTAAFCLAVVTYGVARAA 242
[Close]
BLAST of mRNA_H-paniculata_contig5029.12281.1 vs. uniprot
Match: D7FS32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS32_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 6.400e-18
Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = 1 
Query:  562 VMNQIYYSTAFAMLWLGPMGAVATAAPAAAGFAAWMAVSSKQLAKVMAVVWVGSQATKPLRYLLAILLAPAADILLTSTQQRLRLPTRQRAFFLLCAALLSTTASFCTGTVVYATLRAA 918
            ++N ++YS   A + LGPMGAV    PA +G    +A S KQL KV+ +VW+GSQATKP+R  LA+L APAAD L+ STQ+RL L  ++ A  LL A +  +TA+FC   + Y   RAA
Sbjct:    1 MLNGLWYSGGIAFVMLGPMGAV----PAGSGIEGTIAASVKQLGKVIGLVWLGSQATKPVRLALAVLTAPAADRLIASTQRRLGLK-KKNAVSLLVAVIFGSTAAFCLAVLAYGVARAA 114
[Close]
BLAST of mRNA_H-paniculata_contig5029.12281.1 vs. uniprot
Match: A0A0G4FS21_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FS21_VITBC)

HSP 1 Score: 97.1 bits (240), Expect = 3.340e-17
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 1 
Query:  487 KRVGKVEAAADKLRSYGLAGLLAYGVMNQIYYSTAFAMLWLGPMGAVATAAPAAAGFAAWMAVSSKQLAKVMAVVWVGSQATKPLRYLLAILLAPAADILLTSTQQRLRLPTRQRAFFLLCAALLSTT 870
            +R   + A  D++RSYGLAG+L+YGV+N +YY+ A A+ W   M   + AAP+       +  ++++  KV  +VW GSQ TK LR  +A+++AP  D +L +TQ+RLRL TR+RAF + C  LL  T
Sbjct:  117 RRKTALHAMIDRIRSYGLAGMLSYGVLNALYYTVAVALAWCCRMTCPSMAAPS-------LRCATQRFVKVFVLVWAGSQVTKGLRAAMAVMIAPFVDKVLAATQRRLRLKTRERAFAVCCIMLLGGT 237
[Close]
BLAST of mRNA_H-paniculata_contig5029.12281.1 vs. uniprot
Match: A0A7S3C0T1_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C0T1_9VIRI)

HSP 1 Score: 80.9 bits (198), Expect = 7.810e-14
Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 1 
Query:  505 EAAADKLRSYGLAGLLAYGVMNQIYYSTAFAMLWLGPMGAVATAAPAAAGFAAWMAVSSKQLAKVMAVVWVGSQATKPLRYLLAILLAPAADILLTSTQQRLRLPTRQRAFFLLCAA 855
            + A  +LR+YGLAG+ +YG+ N IYY  AF+  W+   G+V             + V  +++ +V+AVVWVGSQATKPLR   A++LAP  D  L   Q  LRLP++  AF+LL A+
Sbjct:   66 KGAVAQLRAYGLAGVASYGLWNTIYYLLAFSAAWMAMSGSVQGQG---------LQVVLRKMPQVLAVVWVGSQATKPLRAGGALMLAPLMDRGLARAQAALRLPSKLAAFWLLTAS 173
[Close]
BLAST of mRNA_H-paniculata_contig5029.12281.1 vs. uniprot
Match: A0A7R9TLL4_9VIRI (Hypothetical protein n=2 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TLL4_9VIRI)

HSP 1 Score: 79.0 bits (193), Expect = 1.190e-13
Identity = 55/110 (50.00%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:  481 PPKRVGKVEAAADKLRSYGLAGLLAYGVMNQIYYSTAFAMLWLGPMGAVATAAPAAAGFAAWMAVSSKQLAKVMAVVWVGSQATKPLRYLLAILLAPAADILLTSTQQRL 810
            PP R   +    DKL+ YG+AG+L+YGV N  YY  AF +      GA     PA AG AA      ++LA+V+AVVWVGSQATKPLR   A+ LAP AD LL +T  RL
Sbjct:   13 PPARTTML----DKLKEYGMAGVLSYGVFNTTYYIVAFCV------GARMVDLPAGAGIAA----VCRKLAEVLAVVWVGSQATKPLRAGAALTLAPFADRLLGATASRL 108
[Close]
BLAST of mRNA_H-paniculata_contig5029.12281.1 vs. uniprot
Match: W7TS87_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS87_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.070e-12
Identity = 161/626 (25.72%), Postives = 241/626 (38.50%), Query Frame = 1 
Query:  499 KVEAAADKLRSYGLAGLLAYGVMNQIYYSTAFAMLWL----------GPMGAVATAAPAAAGFAAWMAVSSK--------QLAKVMAVVWVGSQATKPLRYLLAILLAPAADILLTSTQQRLRLPTRQRAFFLLCAALLSTTASFCTGTVVYATLRAATSQTTQASSSVILLAHGGLCRRLRSSSFSRDSRLN--------ELEKVATSTQRTGLLQEISEASRRG-YGWRVPTRKTAEIG-------VAAESTGA--------PSSDNKRRSSLGLGHTREVDSERQLNDGPNDDADRVPQRSRTTGQTATXXXXXRVGAKGSGAGI----IRKRRTKRITPQKAAD------LNP-----PPQDNIHGWQEQPKHLLGFWKVGAAVALPDQTENAAPEAIAXXXXXXXXXXXXXXXXXXXXXXYPEIPST--VGPPSPP-VKASVLEEVYALEADGGFGNRETAEMEGLDLG-SDILHHIQYVVLKRDGSLKAGPARLGVVPRAWRFTPANRRLLFEVDVPG------------------------RGVTLRYSAKLKRVPGQYTMAKGLVRVRQM---------------SDTIGETE---------LPSSSRKWPKLAEFEM 2049
            ++ AA   LR  G AGLLAYG++N +YY+ A  ++WL           P    ATAA A  G AA  A +S         +  KV+A+ W GSQ TKPLR   AILLAPA   L+  T+++L+L ++++   +L AAL+        G ++ A          +A++ ++     GL   L   S +  SR N         +   A+     G    + +  R G  G R+P  K+A          + A ST A        PS       SL         S R+    P   +   P  S  +  ++            S        +R++R +R+  ++ A         P     PP  N+HGW + P +L G W + +    P  ++   P A A                       P  PS   VGPP PP +  SVL                     GL++G   ++   + V+L R+G  +  P  LG     W FTPANRR++FEV  P                         R +  R+S +++R P  +    G VRVR                 +   GE +         +PS+   WP +A FE+
Sbjct:  106 RLRAALAALRETGSAGLLAYGIVNALYYTVAITIIWLCVDGDVEPLLSPSALGATAAAAGTGKAAMSAATSAPSLRLLSTRFLKVVAMAWAGSQVTKPLRVGGAILLAPAVSRLMGYTERKLQLRSKRQTLAVLLAALMVFPTLVFAGLLIKA-------GAWEAAAPMVGGWGEGLKEALGRGSPAVGSRGNGGGQGPGGRVSAFASCRLGGGEGGRLWKRLRVGRVGSRLPINKSASSAPLFASLLLPAPSTLAFLQPPCPLPSFPPXXXXSLSSAPLGAGTSIRREGSCPPPVSLSFPSSSFPSSSSSFPSPRPSPSLPPSPDSXXPKRVRRKRLQRLAKRRRASDPARTKRRPRQQYLPPNPNVHGWDQHPDYLRGKWTLRSLSFRPPPSD---PTAHADSPSDAGGADTGEGPSL------PPSPSALDVGPPPPPSLPPSVL--------------------AGLEMGCKSLVLKGKSVLLLREGMGQLSP--LG-----WEFTPANRRVVFEVASPSLSPXXXXXXXXXXXXXXXXXXXXXRRLVWRFSGEVRRKPKHWCRVTGTVRVRLAPLPTSSPSSPTSHGEAGPSGERDGQAPPRRRSIPSTKASWPVVASFEL 688
[Close]
BLAST of mRNA_H-paniculata_contig5029.12281.1 vs. uniprot
Match: I0YLC7_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YLC7_COCSC)

HSP 1 Score: 70.5 bits (171), Expect = 1.140e-10
Identity = 48/131 (36.64%), Postives = 74/131 (56.49%), Query Frame = 1 
Query:  505 EAAADKLRSYGLAGLLAYGVMNQIYYSTAFAMLWLGPMGAVATAAPAAAGFAAWMAVSSKQLAKVMAVVWVGSQATKPLRYLLAILLAPAADILLTSTQQRLRLPTRQRAFFLLCAALLSTTASFCTGTVV 897
            ++   +L+ YGLAG++AYG++N +YY+  F  +W      V    P   G+A     ++++L +V+ + W GSQ TK  R   A+LLAP  D  L + Q+ L L +R+ AF  + A  L  TA+   GTVV
Sbjct:   17 QSLTQRLKVYGLAGVVAYGLLNTVYYTAMFTYMWT-----VGFKVPRGLGYAE----AARKLVEVLGITWAGSQLTKAARAAGALLLAPVVDKGLGAFQRALHLKSRRTAFLYIVALCLGLTAALF-GTVV 137
[Close]
BLAST of mRNA_H-paniculata_contig5029.12281.1 vs. uniprot
Match: A0A7J7Q118_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q118_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 2.220e-10
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 1 
Query:  517 DKLRSYGLAGLLAYGVMNQIYYSTAFAMLWLGPMGAVATAAPAAAGFAAWMAVSSKQLAKVMAVVWVGSQATKPLRYLLAILLAPAADILLTSTQQRLRLPTRQRAFFLLCAALLS 864
            ++L+S GLAG++AYG+ N +YY+ AF ++W        T A   AG  A  A+  ++ A+V A+VW GSQ TK LR   A+  APA D  L     + RL ++Q+AF L+ AA L+
Sbjct:   49 EQLQSLGLAGVVAYGLFNTLYYTVAFLVVWF-------TVATVPAGLGAPAAM--RKAAEVFALVWAGSQVTKLLRAAGALAFAPAVDKGLELAVHKFRLKSKQQAFALVVAACLA 155
[Close]
BLAST of mRNA_H-paniculata_contig5029.12281.1 vs. uniprot
Match: A0A383WPI4_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WPI4_TETOB)

HSP 1 Score: 70.9 bits (172), Expect = 7.040e-10
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 1 
Query:  517 DKLRSYGLAGLLAYGVMNQIYYSTAFAMLWLGPMGAVATAAPAAAGFAAWMAVSSKQLAKVMAVVWVGSQATKPLRYLLAILLAPAADILLTSTQQRLRLPTRQRAFFLLCAALLSTTAS 876
            ++L+S GLAG++AYG+ N +YY+ AF ++W        T A   AG  A  A+  ++ A+V A+VW GSQ TK LR   A+  AP  D  L +   +LRL ++Q+AF L+ AA L+  A+
Sbjct:  125 EQLQSLGLAGVVAYGLFNTLYYTVAFLVVWF-------TVANVPAGLGAQAAM--RKAAEVFALVWAGSQVTKLLRAGGALAFAPVVDKGLEAAVAKLRLKSKQQAFALVVAACLALAAA 235
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5029.12281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8Q3_9STRA2.270e-4431.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L1Z4_9PHAE3.700e-2253.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS32_ECTSI6.400e-1848.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4FS21_VITBC3.340e-1742.97Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S3C0T1_9VIRI7.810e-1443.59Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7R9TLL4_9VIRI1.190e-1350.00Hypothetical protein n=2 Tax=Prasinoderma colonial... [more]
W7TS87_9STRA1.070e-1225.72Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
I0YLC7_COCSC1.140e-1036.64Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A7J7Q118_9CHLO2.220e-1041.38Uncharacterized protein (Fragment) n=1 Tax=Scenede... [more]
A0A383WPI4_TETOB7.040e-1040.83Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5029contigH-paniculata_contig5029:8863..13889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score70.1
Seed ortholog evalue4.4e-09
Seed eggNOG ortholog248742.XP_005643740.1
Hectar predicted targeting categorychloroplast
EggNOG free text desc.isoform X1
EggNOG OGs2AI9Z@1,2RZ4B@2759,34NMI@3041,37UM5@33090
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons5
Model size2340
Cds size1983
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930478.4626606-UTR-H-paniculata_contig5029:8862..91051622930478.4626606-UTR-H-paniculata_contig5029:8862..9105Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5029 8863..9105 -
1691481309.881586-UTR-H-paniculata_contig5029:8862..91051691481309.881586-UTR-H-paniculata_contig5029:8862..9105Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5029 8863..9105 -
1622930478.5529027-UTR-H-paniculata_contig5029:13775..138891622930478.5529027-UTR-H-paniculata_contig5029:13775..13889Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5029 13776..13889 -
1691481309.955864-UTR-H-paniculata_contig5029:13775..138891691481309.955864-UTR-H-paniculata_contig5029:13775..13889Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5029 13776..13889 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930478.4755027-CDS-H-paniculata_contig5029:9105..92981622930478.4755027-CDS-H-paniculata_contig5029:9105..9298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5029 9106..9298 -
1691481309.898898-CDS-H-paniculata_contig5029:9105..92981691481309.898898-CDS-H-paniculata_contig5029:9105..9298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5029 9106..9298 -
1622930478.4870884-CDS-H-paniculata_contig5029:9679..108871622930478.4870884-CDS-H-paniculata_contig5029:9679..10887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5029 9680..10887 -
1691481309.9124687-CDS-H-paniculata_contig5029:9679..108871691481309.9124687-CDS-H-paniculata_contig5029:9679..10887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5029 9680..10887 -
1622930478.4986827-CDS-H-paniculata_contig5029:11371..115231622930478.4986827-CDS-H-paniculata_contig5029:11371..11523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5029 11372..11523 -
1691481309.9245446-CDS-H-paniculata_contig5029:11371..115231691481309.9245446-CDS-H-paniculata_contig5029:11371..11523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5029 11372..11523 -
1622930478.5184515-CDS-H-paniculata_contig5029:11973..120761622930478.5184515-CDS-H-paniculata_contig5029:11973..12076Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5029 11974..12076 -
1691481309.9332798-CDS-H-paniculata_contig5029:11973..120761691481309.9332798-CDS-H-paniculata_contig5029:11973..12076Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5029 11974..12076 -
1622930478.5365427-CDS-H-paniculata_contig5029:13448..137751622930478.5365427-CDS-H-paniculata_contig5029:13448..13775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5029 13449..13775 -
1691481309.9441733-CDS-H-paniculata_contig5029:13448..137751691481309.9441733-CDS-H-paniculata_contig5029:13448..13775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5029 13449..13775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5029.12281.1prot_H-paniculata_contig5029.12281.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5029 9106..13775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5029.12281.1

>prot_H-paniculata_contig5029.12281.1 ID=prot_H-paniculata_contig5029.12281.1|Name=mRNA_H-paniculata_contig5029.12281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=661bp
MRPSAVALVPSTILFHLACCTSTSTAFHTPTIRQDLGVSGWRKAASAGIC
ARGNGSKSSSLHPRISRPSGARARLAWSLGDPAKWSQARGNRSSAVTGST
DGDRSKSDEDLNADRSANLSEKPPKRVGKVEAAADKLRSYGLAGLLAYGV
MNQIYYSTAFAMLWLGPMGAVATAAPAAAGFAAWMAVSSKQLAKVMAVVW
VGSQATKPLRYLLAILLAPAADILLTSTQQRLRLPTRQRAFFLLCAALLS
TTASFCTGTVVYATLRAATSQTTQASSSVILLAHGGLCRRLRSSSFSRDS
RLNELEKVATSTQRTGLLQEISEASRRGYGWRVPTRKTAEIGVAAESTGA
PSSDNKRRSSLGLGHTREVDSERQLNDGPNDDADRVPQRSRTTGQTATAT
ATARVGAKGSGAGIIRKRRTKRITPQKAADLNPPPQDNIHGWQEQPKHLL
GFWKVGAAVALPDQTENAAPEAIAAAAPAVAAAAALAAATAAATTAYPEI
PSTVGPPSPPVKASVLEEVYALEADGGFGNRETAEMEGLDLGSDILHHIQ
YVVLKRDGSLKAGPARLGVVPRAWRFTPANRRLLFEVDVPGRGVTLRYSA
KLKRVPGQYTMAKGLVRVRQMSDTIGETELPSSSRKWPKLAEFEMTMQLK
KKFRHHEKEE*
back to top

mRNA from alignment at H-paniculata_contig5029:8863..13889-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5029.12281.1 ID=mRNA_H-paniculata_contig5029.12281.1|Name=mRNA_H-paniculata_contig5029.12281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5027bp|location=Sequence derived from alignment at H-paniculata_contig5029:8863..13889- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGAGGTTTTTTGGTGCCGAGATAAGAAAGTGGGAGAAATCCCACCAGATG
TTACGGTCACAACGCGCAGTACCTTTGTTGGTAACTGTACGCCAGTGATA
TCTACGCTGTGGTCATGCGCCCATCAGCTGTTGCGTTGGTCCCATCAACT
ATTTTGTTTCATTTGGCGTGTTGCACCAGCACCAGCACAGCATTTCACAC
GCCAACAATAAGACAGGATTTAGGTGTCTCGGGCTGGCGGAAGGCAGCAT
CAGCAGGGATTTGCGCTAGGGGGAATGGTTCGAAATCAAGCTCTCTGCAT
CCACGAATCAGTCGACCAAGTGGAGCTCGAGCACGCCTTGCATGGTCTCT
CGGCGACCCCGCTAAGTGGAGCCAGGCCAGGGGAAACCGGAGCTCAGCCG
TCACCGGTTCTACTGATGGTGACAGGTCGAAGAGTGACGAGGTGTGGTAC
AATATCCGTTTCCCCATCCACCGGCGATAATTATATCTTCGTGCTGGTGA
CTGATACTGTCAATCGGTTTCGTGGGTATCTTTGTGTGTGTTTTGCTGGA
AGTGCCAGCATGAACGTTTCGATTCTGTATGATTTATGGAAAAGGATGGA
CTGTCATAGCCTCACACCTACCGCAAATTATCGGGTATAATACCCCGGGT
GAAAAAGTTGGATTCAACCGAAAGCCAGGAAGGTGTTATTACTACAGTAG
TAAGGGGGGGTGGGGGTGATAGCCCGCATGCAATTCGGTTTTGTACCACA
GAAGTCGCTTGCTGGCTCTAAAGCTTGCGTGTCCCCGCTCTGGCCGGTGG
CAGTGCTCTCTGCCTGCTTGTGGTTCCCGTTATGCTTCAAGCTGCTGGTG
TTTGAGGGAGGGTGTTGCGTGTGTTGGGTCAAACGTATTCACTCACACCC
TACAGTTGAGACGACTTTGTCCTTCTTCACATAAGATATCATTTAGTTCA
AGTTCGGTTGGTCGCATTCAAGAGGGGATTATAAAGTCAAACTTGAATAC
TACGGGGGTGGCATTCTGCTTATCCCCGGATAATGATTGGGAGTCTCGAA
AAAGTGCTATAAAATCATCACCTGGAGTAATGAGTGGTGGGTATTCTCTA
GCAGGGAAAGTAAACCCCGTAACCTGTGGCATGTCGTCTCAAATTGGTGC
ATGGTAAGCGTCTAAATCGGTGCAATCGCTATGCTCATCTGCGATGCCGC
AACGATCGAATCGAAAGGAGGTGGCGGGGCTGTCAACGGCACCACGGTAA
AACAAAGGACTTGAGCAACCGTGAATTTTGGGGACGAACTCGAGTAAGCT
CCGGATAGTGGGGGTATTCCAAGATGTATCCGTCAGTACTTCATACTTTG
GTGATGTGCTGTTTGTCCGCGACTTGACCTCTTCGGGAGTCAATGGTTGG
ATGACAATGACTAAAGGCGAATGTTTGGTTTGCAGGCAGTTCGATCCATG
ACAGCACTCAAAACCAAAAGCACAAACGAACGGGCACATACGTACATGTT
CTCTGTGTTATTCACATAACGGCCATCCTACATCGAGGAGCCGATGATTT
CCGGGGTGTCATCACTTTTGATCCTCTCATCTGCCGTGTCCAACATGCAT
CACACATTCCCTTGTCACTATTTTTTCAACCCGCAACGTGCGGTCCTCTA
AAGGCACAACAGGGTTGCCGATATGTGCTGTCCACGAGGGCGTTGGGTAT
CCCCACAGTGTGGTTGGCTTTTTGGTGTACCAAATCTGCATCTCTACATA
GCCGTTCATCAAATTTAAGCCTCGCACGTCTCACAGGATCGATTTCAAAA
TTCCCATACACAGGATCTCAACGCAGACCGCAGTGCAAATCTCTCGGAGA
AGCCGCCTAAGCGGGTAGGCAAGGTCGAGGCTGCGGCGGACAAACTGCGC
TCGTATGGGCTAGCAGGTGATACCGTGAATTCTCGTGACAGAAGATTTTT
CACGACAACGAAACGGAAACAGGTCTTTTTCTCCTCGAATTGCTTTTGCG
CGGCGAGCTAAACTCCTATGATATCTTGTATATGAACTCGTGGCTTGCCT
ATGGGAACCATATTAATTTGGTCCTGACGCTCGTGCCCTTGAAAATCATT
CTCCACAAAGCAAATAACCACTTACACGTACTATTTTGTTGACTCTCAGC
GGTACCAATCCAACGTCTTTCTAGCAGTCCTGTTATACATTGCCGGGTTT
TCTGCTGTTTTTATTTCATTTTTTGTAGACTCCTTCATGGTGTTCGATCA
TTCGAGGGCATATCTGGAACTCAACACTAATCCCTCCGTTCTTCTGTCAT
GCCCCACTGCATTCTTCCCCGCGCCTCCATTCTTTTTTCATGTGGAACAC
CCGATGGAATCGCAAGGCCTGTTGGCGTACGGGGTAATGAATCAAATCTA
TTATTCTACTGCCTTCGCTATGCTTTGGTTGGGCCCAATGGGAGCGGTGG
CGACGGCGGCGCCTGCAGCGGCAGGATTTGCGGCCTGGATGGCCGTCTCG
TCCAAGCAGCTCGCAAAGGTGTGGCGAGACTGAATTCTCATTCTGTAGCC
TTTCTTTTTTGCCACACGTCCCACCTCTCAGACCTACGGTCAAAGGGATA
TAAGGCTTCCAACAATGACCCTCGCCGAGTATGTACCCCATATGCGGCCA
CGAGGCTGTCCCATGGCAAACGTTTGTGGTGGAATCATCATGCTGAATTT
TGCGTTACCAGGAGATATCCGTCCCTATTCCTTTAATTGTAGAACTGCAT
GTGTTACTGTCGTCAGGAATTAGTCCATACCAGTTGCGAACAATGGATGT
GTAAAACCAACCTATTTTTTGTTCGCTGTGTTCTTTTCGGTTGGTTGAAC
TTGGCTTTTTCGACATTTCATTTGCGCTTAACAGTAATACCGGGAACGGT
GTACTCGGATATAAAAATAGCATCGTTACAGCTGCATATATATCATCGCA
ACGTTTTTCTTGCCACATGTTTGTGTTACGTTGTTGATGTATATTTCGAC
AGGTGATGGCTGTGGTATGGGTAGGAAGCCAGGCCACCAAACCCCTGCGC
TACCTCCTGGCTATCCTCCTTGCCCCCGCTGCTGATATTTTGCTGACCTC
AACTCAACAGCGACTGCGCCTCCCAACCCGACAGCGTGCGTTCTTCCTCC
TCTGCGCCGCATTGCTCTCAACGACCGCTTCCTTTTGCACGGGCACCGTG
GTGTACGCTACTTTGCGCGCCGCAACATCACAGACAACCCAGGCCTCCTC
TTCTGTAATTCTGCTTGCTCATGGTGGGTTATGTCGTAGATTGCGTTCGA
GCTCCTTTTCAAGAGACAGCAGATTGAACGAGCTAGAAAAAGTGGCAACA
AGCACCCAGCGAACGGGCCTTCTTCAAGAGATCAGTGAAGCGTCAAGACG
GGGTTACGGTTGGAGGGTGCCGACAAGGAAAACGGCGGAAATAGGCGTAG
CAGCAGAAAGCACAGGAGCTCCGAGCTCCGATAATAAAAGACGGAGTAGT
CTTGGACTGGGTCACACGAGGGAAGTTGATAGCGAGCGGCAATTGAACGA
TGGACCAAATGATGATGCAGATCGCGTCCCACAGCGCTCACGCACGACAG
GACAGACAGCCACTGCTACGGCGACGGCAAGGGTTGGAGCTAAAGGTTCA
GGGGCAGGTATCATACGAAAGCGACGAACAAAGCGGATCACTCCACAGAA
AGCGGCGGATCTAAACCCCCCTCCTCAGGACAACATCCACGGCTGGCAGG
AGCAACCCAAGCACCTGCTCGGATTTTGGAAGGTCGGCGCAGCAGTAGCA
TTGCCTGACCAGACAGAAAACGCTGCGCCGGAGGCCATAGCCGCAGCTGC
TCCTGCAGTAGCAGCTGCCGCAGCGCTAGCTGCTGCTACTGCTGCTGCCA
CCACCGCATATCCGGAGATACCAAGTACCGTCGGACCACCGTCGCCGCCT
GTGAAGGCTTCTGTCTTGGAAGAAGTGTATGCACTGGAGGCCGATGGAGG
ATTCGGTAATCGGGAAACGGCAGAGATGGAAGGGTTGGACCTAGGATCGG
ACATTTTGCATCACATCCAGTACGTCGTGTTGAAACGGGACGGGTCGCTC
AAGGCGGGCCCCGCGCGGTTGGGGGTTGTCCCGCGCGCGTGGCGGTTCAC
GCCCGCCAACAGGCGGCTTTTGTTTGAAGTCGACGTTCCGGGACGAGGGG
TGACGCTTAGGTGAGGTTCTTTCTTTCCATCCTGAACATAAAAAAATATA
TATGATTCAAAAGTACTGAGAGGGAAGAAGCTTAAGCCCACAACCTTAGG
TGAGGTTGTCGTGGGGTAAGGAACTGAATTTGTTTTGTTAGTGCATCGCG
CAAGCATGAAAATTGCTTGCCAATAATAGTATCTTTATAAACCTGCCCAA
CGAGCACTTTCGGTGTGGTGGTAGTAGTAGTAGCACGGGGAAATATCACA
GTGCGTGATGGGCTCATTCCTTGTGACTTGTCTGAAAGCTCGATGTAGTG
GCACACTGTAAAATGTAACGTGACTTTTTCGCCGCCCCATTAATTTGCTA
TATTTCCCTCCATCGCCCAAATTGAACACATAATCCGTCAGGTACAGCGC
GAAGCTCAAGCGGGTGCCCGGGCAATATACGATGGCAAAAGGTCTTGTGA
GGGTCAGACAGATGTCTGATACTATCGGGGAAACAGAGCTTCCGAGCTCA
AGCCGAAAATGGCCCAAGCTGGCCGAGTTCGAGATGACAATGCAATTGAA
GAAGAAGTTTAGGCATCATGAAAAGGAAGAGTAGGCAAGGATTAACCATA
CATATAACAGGTACTAAGTAAAACGCACCGAATGCCGCAAAAATTAACCG
CTGACTCGTACAGCATTACAAGGTAACTTCAAAGTGTTGGAGTTGATCGT
CGACACTTTTTTCGGCACACGAGGTCGCAGCGTCGTGTGGGACGTCCGCA
GGTTGCCTTGCCATCCGACTCAAAAATAAAATGAACAGCGGGGATTAAGG
CTGAGTACGAAGTGGTGTTGGGGGCGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5029:8863..13889-

>mRNA_H-paniculata_contig5029.12281.1 ID=mRNA_H-paniculata_contig5029.12281.1|Name=mRNA_H-paniculata_contig5029.12281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3966bp|location=Sequence derived from alignment at H-paniculata_contig5029:8863..13889- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCCCATCAGCTGTTGCGTTGGTCCCATCAACTATTTTGTTTCATTT
GGCGTGTTGCACCAGCACCAGCACAGCATTTCACACGCCAACAATAAGAC
AGGATTTAGGTGTCTCGGGCTGGCGGAAGGCAGCATCAGCAGGGATTTGC
GCTAGGGGGAATGGTTCGAAATCAAGCTCTCTGCATCCACGAATCAGTCG
ACCAAGTGGAGCTCGAGCACGCCTTGCATGGTCTCTCGGCGACCCCGCTA
AGTGGAGCCAGGCCAGGGGAAACCGGAGCTCAGCCGTCACCGGTTCTACT
GATGGTGACAGGTCGAAGAGTGACGAGATGCGCCCATCAGCTGTTGCGTT
GGTCCCATCAACTATTTTGTTTCATTTGGCGTGTTGCACCAGCACCAGCA
CAGCATTTCACACGCCAACAATAAGACAGGATTTAGGTGTCTCGGGCTGG
CGGAAGGCAGCATCAGCAGGGATTTGCGCTAGGGGGAATGGTTCGAAATC
AAGCTCTCTGCATCCACGAATCAGTCGACCAAGTGGAGCTCGAGCACGCC
TTGCATGGTCTCTCGGCGACCCCGCTAAGTGGAGCCAGGCCAGGGGAAAC
CGGAGCTCAGCCGTCACCGGTTCTACTGATGGTGACAGGTCGAAGAGTGA
CGAGGATCTCAACGCAGACCGCAGTGCAAATCTCTCGGAGAAGCCGCCTA
AGCGGGTAGGCAAGGTCGAGGCTGCGGCGGACAAACTGCGCTCGTATGGG
CTAGCAGGATCTCAACGCAGACCGCAGTGCAAATCTCTCGGAGAAGCCGC
CTAAGCGGGTAGGCAAGGTCGAGGCTGCGGCGGACAAACTGCGCTCGTAT
GGGCTAGCAGGCCTGTTGGCGTACGGGGTAATGAATCAAATCTATTATTC
TACTGCCTTCGCTATGCTTTGGTTGGGCCCAATGGGAGCGGTGGCGACGG
CGGCGCCTGCAGCGGCAGGATTTGCGGCCTGGATGGCCGTCTCGTCCAAG
CAGCTCGCAAAGGCCTGTTGGCGTACGGGGTAATGAATCAAATCTATTAT
TCTACTGCCTTCGCTATGCTTTGGTTGGGCCCAATGGGAGCGGTGGCGAC
GGCGGCGCCTGCAGCGGCAGGATTTGCGGCCTGGATGGCCGTCTCGTCCA
AGCAGCTCGCAAAGGTGATGGCTGTGGTATGGGTAGGAAGCCAGGCCACC
AAACCCCTGCGCTACCTCCTGGCTATCCTCCTTGCCCCCGCTGCTGATAT
TTTGCTGACCTCAACTCAACAGCGACTGCGCCTCCCAACCCGACAGCGTG
CGTTCTTCCTCCTCTGCGCCGCATTGCTCTCAACGACCGCTTCCTTTTGC
ACGGGCACCGTGGTGTACGCTACTTTGCGCGCCGCAACATCACAGACAAC
CCAGGCCTCCTCTTCTGTAATTCTGCTTGCTCATGGTGGGTTATGTCGTA
GATTGCGTTCGAGCTCCTTTTCAAGAGACAGCAGATTGAACGAGCTAGAA
AAAGTGGCAACAAGCACCCAGCGAACGGGCCTTCTTCAAGAGATCAGTGA
AGCGTCAAGACGGGGTTACGGTTGGAGGGTGCCGACAAGGAAAACGGCGG
AAATAGGCGTAGCAGCAGAAAGCACAGGAGCTCCGAGCTCCGATAATAAA
AGACGGAGTAGTCTTGGACTGGGTCACACGAGGGAAGTTGATAGCGAGCG
GCAATTGAACGATGGACCAAATGATGATGCAGATCGCGTCCCACAGCGCT
CACGCACGACAGGACAGACAGCCACTGCTACGGCGACGGCAAGGGTTGGA
GCTAAAGGTTCAGGGGCAGGTATCATACGAAAGCGACGAACAAAGCGGAT
CACTCCACAGAAAGCGGCGGATCTAAACCCCCCTCCTCAGGACAACATCC
ACGGCTGGCAGGAGCAACCCAAGCACCTGCTCGGATTTTGGAAGGTCGGC
GCAGCAGTAGCATTGCCTGACCAGACAGAAAACGCTGCGCCGGAGGCCAT
AGCCGCAGCTGCTCCTGCAGTAGCAGCTGCCGCAGCGCTAGCTGCTGCTA
CTGCTGCTGCCACCACCGCATATCCGGAGATACCAAGTACCGTCGGACCA
CCGTCGCCGCCTGTGAAGGCTTCTGTCTTGGAAGAAGTGTATGCACTGGA
GGCCGATGGAGGATTCGGTAATCGGGAAACGGCAGAGATGGAAGGGTTGG
ACCTAGGATCGGACATTTTGCATCACATCCAGTACGTCGTGTTGAAACGG
GACGGGTCGCTCAAGGCGGGCCCCGCGCGGTTGGGGGTTGTCCCGCGCGC
GTGGCGGTTCACGCCCGCCAACAGGCGGCTTTTGTTTGAAGTCGACGTTC
CGGGACGAGGGGTGACGCTTAGGTGATGGCTGTGGTATGGGTAGGAAGCC
AGGCCACCAAACCCCTGCGCTACCTCCTGGCTATCCTCCTTGCCCCCGCT
GCTGATATTTTGCTGACCTCAACTCAACAGCGACTGCGCCTCCCAACCCG
ACAGCGTGCGTTCTTCCTCCTCTGCGCCGCATTGCTCTCAACGACCGCTT
CCTTTTGCACGGGCACCGTGGTGTACGCTACTTTGCGCGCCGCAACATCA
CAGACAACCCAGGCCTCCTCTTCTGTAATTCTGCTTGCTCATGGTGGGTT
ATGTCGTAGATTGCGTTCGAGCTCCTTTTCAAGAGACAGCAGATTGAACG
AGCTAGAAAAAGTGGCAACAAGCACCCAGCGAACGGGCCTTCTTCAAGAG
ATCAGTGAAGCGTCAAGACGGGGTTACGGTTGGAGGGTGCCGACAAGGAA
AACGGCGGAAATAGGCGTAGCAGCAGAAAGCACAGGAGCTCCGAGCTCCG
ATAATAAAAGACGGAGTAGTCTTGGACTGGGTCACACGAGGGAAGTTGAT
AGCGAGCGGCAATTGAACGATGGACCAAATGATGATGCAGATCGCGTCCC
ACAGCGCTCACGCACGACAGGACAGACAGCCACTGCTACGGCGACGGCAA
GGGTTGGAGCTAAAGGTTCAGGGGCAGGTATCATACGAAAGCGACGAACA
AAGCGGATCACTCCACAGAAAGCGGCGGATCTAAACCCCCCTCCTCAGGA
CAACATCCACGGCTGGCAGGAGCAACCCAAGCACCTGCTCGGATTTTGGA
AGGTCGGCGCAGCAGTAGCATTGCCTGACCAGACAGAAAACGCTGCGCCG
GAGGCCATAGCCGCAGCTGCTCCTGCAGTAGCAGCTGCCGCAGCGCTAGC
TGCTGCTACTGCTGCTGCCACCACCGCATATCCGGAGATACCAAGTACCG
TCGGACCACCGTCGCCGCCTGTGAAGGCTTCTGTCTTGGAAGAAGTGTAT
GCACTGGAGGCCGATGGAGGATTCGGTAATCGGGAAACGGCAGAGATGGA
AGGGTTGGACCTAGGATCGGACATTTTGCATCACATCCAGTACGTCGTGT
TGAAACGGGACGGGTCGCTCAAGGCGGGCCCCGCGCGGTTGGGGGTTGTC
CCGCGCGCGTGGCGGTTCACGCCCGCCAACAGGCGGCTTTTGTTTGAAGT
CGACGTTCCGGGACGAGGGGTGACGCTTAGGTACAGCGCGAAGCTCAAGC
GGGTGCCCGGGCAATATACGATGGCAAAAGGTCTTGTGAGGGTCAGACAG
ATGTCTGATACTATCGGGGAAACAGAGCTTCCGAGCTCAAGCCGAAAATG
GCCCAAGCTGGCCGAGTTCGAGATGACAATGCAATTGAAGAAGAAGTTTA
GGCATCATGAAAAGGAAGAGTAGGTACAGCGCGAAGCTCAAGCGGGTGCC
CGGGCAATATACGATGGCAAAAGGTCTTGTGAGGGTCAGACAGATGTCTG
ATACTATCGGGGAAACAGAGCTTCCGAGCTCAAGCCGAAAATGGCCCAAG
CTGGCCGAGTTCGAGATGACAATGCAATTGAAGAAGAAGTTTAGGCATCA
TGAAAAGGAAGAGTAG
back to top