mRNA_H-paniculata_contig50251.12277.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50251.12277.1
Unique NamemRNA_H-paniculata_contig50251.12277.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig50251.12277.1 vs. uniprot
Match: A0A6H5JAL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAL2_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 4.640e-10
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 2 
Query:  260 EVQRQTSRLFLGKHLAMSPRDLLRWAGRKPGSEQQLAREG 379
            E QRQ+SRLFLGKH A+SPRDLLRWAGR+P  +QQLA EG
Sbjct:  160 EAQRQSSRLFLGKHGAISPRDLLRWAGRRPQGKQQLAEEG 199
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BLAST of mRNA_H-paniculata_contig50251.12277.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 5.820e-10
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 2 
Query:  194 VHVEAL--REGHRIILDELSLAPS------------EVQRQTSRLFLGKHLAMSPRDLLRWAGRKPGSEQQLAREG 379
            VHV+ +   E   I+ +   L PS            + QRQ+SRLFLGKH A+SPRDLLRWAGRKP  +QQLA EG
Sbjct:  494 VHVDDIPGAEWEIILAERCGLPPSHCKLLVKVLHELQAQRQSSRLFLGKHGAISPRDLLRWAGRKPQGKQQLAEEG 569
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50251.12277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAL2_9PHAE4.640e-1077.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL28_ECTSI5.820e-1051.32Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50251contigH-paniculata_contig50251:9..1058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue4.4e-09
Seed eggNOG ortholog2880.D7FL28
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,KOG1808@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons2
Model size382
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50251.12277.1prot_H-paniculata_contig50251.12277.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50251 160..1058 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930477.921164-UTR-H-paniculata_contig50251:8..1591622930477.921164-UTR-H-paniculata_contig50251:8..159Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50251 9..159 +
1691481309.6100025-UTR-H-paniculata_contig50251:8..1591691481309.6100025-UTR-H-paniculata_contig50251:8..159Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50251 9..159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930477.9395475-CDS-H-paniculata_contig50251:159..2701622930477.9395475-CDS-H-paniculata_contig50251:159..270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50251 160..270 +
1691481309.6226902-CDS-H-paniculata_contig50251:159..2701691481309.6226902-CDS-H-paniculata_contig50251:159..270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50251 160..270 +
1622930477.9685514-CDS-H-paniculata_contig50251:938..10581622930477.9685514-CDS-H-paniculata_contig50251:938..1058Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50251 939..1058 +
1691481309.6400564-CDS-H-paniculata_contig50251:938..10581691481309.6400564-CDS-H-paniculata_contig50251:938..1058Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50251 939..1058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50251.12277.1

>prot_H-paniculata_contig50251.12277.1 ID=prot_H-paniculata_contig50251.12277.1|Name=mRNA_H-paniculata_contig50251.12277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MRCFRCNVCFCAQGVHVEALREGHRIILDELSLAPSEVQRQTSRLFLGKH
LAMSPRDLLRWAGRKPGSEQQLAREG*
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mRNA from alignment at H-paniculata_contig50251:9..1058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50251.12277.1 ID=mRNA_H-paniculata_contig50251.12277.1|Name=mRNA_H-paniculata_contig50251.12277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1050bp|location=Sequence derived from alignment at H-paniculata_contig50251:9..1058+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATGATTCACGGATCTAGTCGGGCCTTCGGGTAACCGGCACATGAACCC
GATTTCGGGGTAAGTGTTGGGCAAAGGTTCCCTCCCCTCATTTCAAGGAG
AAAAGAAAAAGTTTGTCTTGTTCTTTTGAGCTACACCGCAATATACCATC
GATGCGTTGTTTTCGTTGCAACGTTTGTTTCTGTGCGCAGGGTGTACACG
TGGAGGCGCTGCGCGAGGGACATCGGATAATATTGGATGAGTTGAGCTTG
GCTCCTTCAGAGGTACAAATGATGTGTACGGAGCTGATTTTTACGAAAAT
ATGGACTAGTCGCGGTAAAGTGACAGAGCTACCATCAAATACATGGACTG
AGCAAAACAATCGTTCTGGACCGGTATTTTTGGACCGCCTTTTGGTTCCA
AGAGGGTGTCTCACGGGAAAAAATGGTTATTTAATCTACTCCATTTTTTT
TGTCGCCCTTGAAAATGGTGAGGTGCTGTAGGCATTAAACAGACTTTTGG
ATCACAACCGAAAGCTGCCATGTCTCCGTTGTGCCTCTTCCGTGCACTGG
TTCGTGATTGATCTTGCGGCCAAAAATGAGAGTGATCGTGAACATCTTGA
AACACGAGTTGGTGCTGTTGATTGGTGTGGAATATTTGGCGGACCATGTA
GCATCGCCCTTTACCTTCTTTCTCGATGATCAGGTGTATGTGGTTGACAT
TCCTGGTGCAGAGTAGCAAACAAAGTTGACGGAGCGGTGCGGTATGCCGC
CGAGCCATTGCAAGCTACTAGTCATGATTATCGATGAGATGCAGGTATTA
CGCCACTGATGAGGTGTTCAAATACACATCCAAAGTCATGAAGTACGTAA
TTTCTGGCTCACCCAGACGGATTGCAGGTTTGCTCACAATGGGTATGTGT
ATCGCGTGTCGTGCCCAATGGAACGCACAGGTTCAGCGTCAAACCAGCCG
CTTGTTCCTGGGCAAGCACTTGGCTATGTCTCCGCGGGACTTACTACGGT
GGGCCGGGCGTAAGCCTGGAAGTGAACAACAGCTGGCACGTGAAGGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig50251:9..1058+

>mRNA_H-paniculata_contig50251.12277.1 ID=mRNA_H-paniculata_contig50251.12277.1|Name=mRNA_H-paniculata_contig50251.12277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig50251:9..1058+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTTGTTTTCGTTGCAACGTTTGTTTCTGTGCGCAGGGTGTACACGT
GGAGGCGCTGCGCGAGGGACATCGGATAATATTGGATGAGTTGAGCTTGG
CTCCTTCAGAGATGCGTTGTTTTCGTTGCAACGTTTGTTTCTGTGCGCAG
GGTGTACACGTGGAGGCGCTGCGCGAGGGACATCGGATAATATTGGATGA
GTTGAGCTTGGCTCCTTCAGAGGTTCAGCGTCAAACCAGCCGCTTGTTCC
TGGGCAAGCACTTGGCTATGTCTCCGCGGGACTTACTACGGTGGGCCGGG
CGTAAGCCTGGAAGTGAACAACAGCTGGCACGTGAAGGGTAAGTTCAGCG
TCAAACCAGCCGCTTGTTCCTGGGCAAGCACTTGGCTATGTCTCCGCGGG
ACTTACTACGGTGGGCCGGGCGTAAGCCTGGAAGTGAACAACAGCTGGCA
CGTGAAGGGTAA
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