mRNA_H-paniculata_contig50198.12267.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50198.12267.1
Unique NamemRNA_H-paniculata_contig50198.12267.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig50198.12267.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.050e-8
Identity = 27/73 (36.99%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    1 AWFGLIDKYQNPSKQRRRILMRQLDGTTMKQNQDPDVFLARIFQLRDELAHMGEEVSEERLTDIVIEGLTDDY 219
             W  L  K+Q   + RRR L R+L+  TM+   DPD+F+  ++ L ++L  +G  V++E+L DI+++GL  +Y
Sbjct:  235 VWKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEY 307
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BLAST of mRNA_H-paniculata_contig50198.12267.1 vs. uniprot
Match: V4JZN1_EUTSA (Uncharacterized protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4JZN1_EUTSA)

HSP 1 Score: 49.7 bits (117), Expect = 4.530e-5
Identity = 35/98 (35.71%), Postives = 49/98 (50.00%), Query Frame = 1 
Query:    1 AWFGLIDKYQNPSKQRRRILMRQLDGTTMKQNQDPDVFLARIFQLRDELAHMGEEVSEERLTDIVIEGLTDDYEQV-KYNAERDPEFSLSEIEVTLRN 291
            AW  L   Y  P+    + L  QL    +K  +D D ++  I    D LA +   V+ E LTDI+++GLTDDY+ + K    RD   S SE+   L N
Sbjct:   81 AWINLASMYDKPTHGHIKQLQDQLK-LCVKGRKDIDGYMQLIKTKSDALALLSSPVNSEYLTDIILDGLTDDYKSIIKSVHSRDSPISFSELHKKLLN 177
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50198.12267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE2.050e-836.99Integrase catalytic domain-containing protein n=1 ... [more]
V4JZN1_EUTSA4.530e-535.71Uncharacterized protein n=1 Tax=Eutrema salsugineu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50198contigH-paniculata_contig50198:861..1151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930476.573688-CDS-H-paniculata_contig50198:860..11511622930476.573688-CDS-H-paniculata_contig50198:860..1151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50198 861..1151 -
1691481308.8822613-CDS-H-paniculata_contig50198:860..11511691481308.8822613-CDS-H-paniculata_contig50198:860..1151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50198 861..1151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50198.12267.1prot_H-paniculata_contig50198.12267.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50198 861..1151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50198.12267.1

>prot_H-paniculata_contig50198.12267.1 ID=prot_H-paniculata_contig50198.12267.1|Name=mRNA_H-paniculata_contig50198.12267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
AWFGLIDKYQNPSKQRRRILMRQLDGTTMKQNQDPDVFLARIFQLRDELA
HMGEEVSEERLTDIVIEGLTDDYEQVKYNAERDPEFSLSEIEVTLRN
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mRNA from alignment at H-paniculata_contig50198:861..1151-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50198.12267.1 ID=mRNA_H-paniculata_contig50198.12267.1|Name=mRNA_H-paniculata_contig50198.12267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig50198:861..1151- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTGGTTTGGCCTGATTGACAAGTATCAGAATCCATCCAAGCAGAGACG
CCGTATATTAATGCGGCAGCTTGACGGGACAACAATGAAGCAAAACCAGG
ACCCCGATGTATTTTTGGCCCGTATTTTTCAGCTCAGGGATGAGCTAGCA
CACATGGGGGAAGAAGTATCGGAAGAACGATTGACCGATATCGTTATAGA
AGGACTTACTGACGATTATGAGCAAGTGAAATATAATGCAGAGCGCGACC
CCGAGTTTAGCTTGAGCGAAATTGAGGTCACTCTGCGTAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig50198:861..1151-

>mRNA_H-paniculata_contig50198.12267.1 ID=mRNA_H-paniculata_contig50198.12267.1|Name=mRNA_H-paniculata_contig50198.12267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig50198:861..1151- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTGGTTTGGCCTGATTGACAAGTATCAGAATCCATCCAAGCAGAGACG
CCGTATATTAATGCGGCAGCTTGACGGGACAACAATGAAGCAAAACCAGG
ACCCCGATGTATTTTTGGCCCGTATTTTTCAGCTCAGGGATGAGCTAGCA
CACATGGGGGAAGAAGTATCGGAAGAACGATTGACCGATATCGTTATAGA
AGGACTTACTGACGATTATGAGCAAGTGAAATATAATGCAGAGCGCGACC
CCGAGTTTAGCTTGAGCGAAATTGAGGTCACTCTGCGTAATGCGTGGTTT
GGCCTGATTGACAAGTATCAGAATCCATCCAAGCAGAGACGCCGTATATT
AATGCGGCAGCTTGACGGGACAACAATGAAGCAAAACCAGGACCCCGATG
TATTTTTGGCCCGTATTTTTCAGCTCAGGGATGAGCTAGCACACATGGGG
GAAGAAGTATCGGAAGAACGATTGACCGATATCGTTATAGAAGGACTTAC
TGACGATTATGAGCAAGTGAAATATAATGCAGAGCGCGACCCCGAGTTTA
GCTTGAGCGAAATTGAGGTCACTCTGCGTAAT
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