mRNA_H-paniculata_contig5011.12252.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5011.12252.1
Unique NamemRNA_H-paniculata_contig5011.12252.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5011.12252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5011contigH-paniculata_contig5011:3880..4738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size223
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5011.12252.1prot_H-paniculata_contig5011.12252.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5011 3893..4708 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930475.2221673-UTR-H-paniculata_contig5011:3879..38921622930475.2221673-UTR-H-paniculata_contig5011:3879..3892Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5011 3880..3892 -
1691481308.3188634-UTR-H-paniculata_contig5011:3879..38921691481308.3188634-UTR-H-paniculata_contig5011:3879..3892Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5011 3880..3892 -
1622930475.2775877-UTR-H-paniculata_contig5011:4708..47381622930475.2775877-UTR-H-paniculata_contig5011:4708..4738Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5011 4709..4738 -
1691481308.3518496-UTR-H-paniculata_contig5011:4708..47381691481308.3518496-UTR-H-paniculata_contig5011:4708..4738Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5011 4709..4738 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930475.2449129-CDS-H-paniculata_contig5011:3892..40341622930475.2449129-CDS-H-paniculata_contig5011:3892..4034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5011 3893..4034 -
1691481308.3299634-CDS-H-paniculata_contig5011:3892..40341691481308.3299634-CDS-H-paniculata_contig5011:3892..4034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5011 3893..4034 -
1622930475.2605836-CDS-H-paniculata_contig5011:4670..47081622930475.2605836-CDS-H-paniculata_contig5011:4670..4708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5011 4671..4708 -
1691481308.343778-CDS-H-paniculata_contig5011:4670..47081691481308.343778-CDS-H-paniculata_contig5011:4670..4708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5011 4671..4708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5011.12252.1

>prot_H-paniculata_contig5011.12252.1 ID=prot_H-paniculata_contig5011.12252.1|Name=mRNA_H-paniculata_contig5011.12252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MKTGAAAEPHHTRIQITMDSRTRRSQSQPEPRVAAVGSHSSLHRVFGGAK
RRSTVDRAA*
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mRNA from alignment at H-paniculata_contig5011:3880..4738-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5011.12252.1 ID=mRNA_H-paniculata_contig5011.12252.1|Name=mRNA_H-paniculata_contig5011.12252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=859bp|location=Sequence derived from alignment at H-paniculata_contig5011:3880..4738- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATCAACGGGGTTGCTGGAGTTTCAGCCTATGAAAACCGGCGCTGCTGC
TGAACCCCATCACACGCGGTGAGAGGGAGCTGACGAGCGGCGGGGCACCC
CGGCTTTATGGCGTGTATGTTGTATATAGAGCAGATGTATTTATAGGTTT
TCGTGGACTATTGTGAACTATTATGCGTGAGTTCTGCTGATCGACCAGAG
AGAGAGCCCTGAGGAGAAAGGAACCGCCTTGATCTGCCTTGTAATCTACC
TTGTGATCTACCTTGTGATCTACCTTGTTAGCCGGTGTTGTCTCTTCGTA
TGCTCGTCGCTTATACCCCTATACAGACAATTTCAAAACGTAGGTAGATC
TCACAAAACGTGAGACCTGACTTGATCTACAAAGGGTATTGCACGCTAGA
GTAACCTCGCGGTATCTTGTTGTCACCTGCGAAGGATTGTGCTGCCTCTT
GCTTTAAGAATGTATTTTGCAAGCACAGACAGCCCACACACAAGAATCCA
CGATGTGCTTTCCCACTCAAAATTCAGCCCGGCCTCCTTCGGTGCAACCC
CCCACCTCCTGCCGACAACCCCCCGCGCGTGTTAGACCCTACGTAACCTA
TGATCATTGCTACTTCACCTATTCTCGCCTCCCCCCCCTTAAATATTATC
TCCTGCTCGGTATTTTAATCCCCTCTCTTCCCCCTCGGGACCATCGAATG
TCAGGATACAGATCACGATGGATTCCAGGACCCGGAGGTCTCAGTCACAG
CCGGAACCGCGGGTGGCGGCCGTCGGCAGCCACTCGTCGCTTCACCGCGT
GTTTGGAGGGGCGAAGCGGAGGAGTACTGTGGACCGCGCTGCCTAAATAG
TCAGCAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig5011:3880..4738-

>mRNA_H-paniculata_contig5011.12252.1 ID=mRNA_H-paniculata_contig5011.12252.1|Name=mRNA_H-paniculata_contig5011.12252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig5011:3880..4738- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAACCGGCGCTGCTGCTGAACCCCATCACACGCGATGAAAACCGGC
GCTGCTGCTGAACCCCATCACACGCGGATACAGATCACGATGGATTCCAG
GACCCGGAGGTCTCAGTCACAGCCGGAACCGCGGGTGGCGGCCGTCGGCA
GCCACTCGTCGCTTCACCGCGTGTTTGGAGGGGCGAAGCGGAGGAGTACT
GTGGACCGCGCTGCCTAAGATACAGATCACGATGGATTCCAGGACCCGGA
GGTCTCAGTCACAGCCGGAACCGCGGGTGGCGGCCGTCGGCAGCCACTCG
TCGCTTCACCGCGTGTTTGGAGGGGCGAAGCGGAGGAGTACTGTGGACCG
CGCTGCCTAA
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