mRNA_H-paniculata_contig5002.12237.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5002.12237.1
Unique NamemRNA_H-paniculata_contig5002.12237.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5002.12237.1 vs. uniprot
Match: D7FX84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX84_ECTSI)

HSP 1 Score: 489 bits (1260), Expect = 5.160e-153
Identity = 275/524 (52.48%), Postives = 338/524 (64.50%), Query Frame = 1 
Query:  778 TVAGRRGVKRGLE---EENLHDGIEAMRVASDDELSSVRSNAGGIGGVRRGKERMGG-AVERGDRAAAWSANCEDQEEEHSEDDDYLDDEDLKPNISNPTWLGPFETYDLGAGESINPSINRYLKEYQREGVKWLYGKFAEGKGAVLGDDMGLGKTVQTISLISAVLHKTGTVRDRENLRRRRKEGRPASASGMPMLIVAPKAVVDGWMEHLEQWGFFEAASLTKSEQANGVVKSLVSGRLEILVVGYTMLGIVIDKLKSVPFDAVFFDEYHTIKSGATKQAQAASSLDTKRVYGLTGTLMQNKMDELWFLMHLIDPHCLGEQSRFNEHFTEPLKRDRAVNASAADRRLATKRQAELKKIIDRHMLRRTKEEVLSDVLKGKSDTVVFCNVSDVQRDLYLNVLALPEFQLLKRAKEPCDCGRRNAH-RGRCCYKIPVDRRPDSCTAAPHALTXXXXXXXXXXXXXXXXXXXXXXXXGGDGIDPRAVLYRKYHQPDLEECSKCPSCFGLAAVAKLQKIANHPCLLQ 2334
            T AG   V RG +   E+ L++ IEAMRV SD+E      +AGG              AV  G                       +D EDLKP+I +P WLG    +DLG G  INPSINRYL++YQREGV+WLY KF  G+G +LGDDMGLGKTVQ+I+L+++VL K+GT RD E LRRRRKEG PAS++G+P LIVAP AVV  W++ ++ WG F A  L     A+ ++ +L +GR E++   Y +L   +D+LK   FDAV FDEYHTIKS  T  +QAA  L TKRV+GLTGTL+QN M ELWFL+HLIDP  +GEQSRF EHF+EP+KR RA+NA+A+DRRL  KR  EL  I D++M+RRTK+E L DVLKGKSDTVVFC++S+VQR+LY  VL+LPEFQLL RAKEPC+CGR     R RCC+K P  R                                     GGDG+DPRAVL+R+ H P L EC KCP C  L AV+KLQKIANHPCLLQ
Sbjct:  358 TAAGSTAVGRGRKRGHEDFLNEKIEAMRVGSDEE----GPHAGGXXXXXXXXXXXXXXAVTMGPDXXXXXX--------------XVDYEDLKPHIEDPPWLGKLVPFDLGEGGFINPSINRYLRDYQREGVRWLYAKFQAGQGGILGDDMGLGKTVQSIALLASVLRKSGTGRDSEELRRRRKEGLPASSTGLPWLIVAPAAVVPEWIKQIKVWGHFAAYQLESGRDADDLMVALKAGRYEVVATSYDLLRACVDRLKKQRFDAVIFDEYHTIKSATTMVSQAACELRTKRVFGLTGTLIQNDMKELWFLLHLIDPLAVGEQSRFTEHFSEPIKRARAMNATASDRRLGEKRLKELDGIRDKNMIRRTKDEELGDVLKGKSDTVVFCDLSEVQRELYQRVLSLPEFQLLARAKEPCNCGRSGRPTRARCCHKTPDSR-----------------------------------GGGGDGVDPRAVLFRRLH-PTLMECDKCPFCCQLPAVSKLQKIANHPCLLQ 827
[Close]
BLAST of mRNA_H-paniculata_contig5002.12237.1 vs. uniprot
Match: D7FIQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ3_ECTSI)

HSP 1 Score: 316 bits (809), Expect = 8.230e-89
Identity = 198/467 (42.40%), Postives = 265/467 (56.75%), Query Frame = 1 
Query:  997 EEHSEDDDYLDDED--LKPNISNPTWLGPFE-----TYDLGAGESINP-SINRYLKEYQREGVKWLYGKF--AEG-KGAVLGDDMGLGKTVQTISLISAVLHKTGTVRDRENLRRRRKEGRPASASGMPMLIVAPKAVVDGWMEHLEQWGFFEAASLTKSEQANG------VVKSLVSGRLEILVVGYTMLGIVIDKLKSVPFDAVFFDEYHTIKSGATKQAQAASSLDTKRVY-GLTGTLMQNKMDELWFLMHLIDPHCLGEQSRFNEHFTEPLKRDRAVNASAADRRLATKRQAELKKIIDRHMLRRTKEEVLSDVLKGKSDTVVFCNVSDVQRDLYLNVLALPEFQLLKRAKEPCDCGRRNAHRGRCCYKIPVDRRPDSCTAAPHALTXXXXXXXXXXXXXXXXXXXXXXXXGGDGIDPRAVLYRKYHQPDLEECSK---CPSCFGLAAVAKLQKIANHPCLLQ 2334
            EE  E DD LDDE   LKP I NP +  P +     T + G   +  P S NRYL+ YQREGV+++Y +    +G KG +L DDMGLGKTVQTI+L+ A+L KTGT RDR +++RR+      S +G P+LIV P++V+  W  HL+ WG FE A +T      G      V   L +G LE++VVG TM    I+ L    +    FDE+H  K+  T + +A   L    V+ GLTGTL+QN +DE W L++ + P C+G Q  F  HFTEP+ R R   AS AD  L  +R  E+    D+ +LRR K+ +L D+LKGK  TVVFCN++ VQ+ +Y  VL+LPEF+LL  A +PC CGR +A  G CC   P D   +                                    D +DPRAV++R++H PDLE C K   CP C   +A++KLQK+ANHP LLQ
Sbjct:  231 EEEGETDDDLDDEGEGLKPTIRNPPFEDPGKRPLVLTNEAGGERAEVPASANRYLQGYQREGVEFMYRRVRHTDGPKGVILADDMGLGKTVQTIALLLALLKKTGTRRDRMDIKRRKDCKGHVSVAGKPVLIVCPRSVLPNWTGHLKTWGHFETACITSGGSTAGPESLQRVESRLKAGLLEVVVVGETMFANSIETLSEFDWLTAVFDEFHHYKNPYTNKNRAVQKLVNAEVFIGLTGTLVQNNLDEYWSLLNTVQPGCVGRQDDFKRHFTEPILRGRKRGASRADVLLGRERIDEMGVTRDKVVLRRVKD-ILGDLLKGKIGTVVFCNLTHVQKLVYRTVLSLPEFKLLANASDPCPCGRPDARSGSCCGMWPQDDTSE------------------------------------DLVDPRAVIWRRFH-PDLEVCKKGPGCPYCCSFSAISKLQKLANHPSLLQ 659
[Close]
BLAST of mRNA_H-paniculata_contig5002.12237.1 vs. uniprot
Match: A0A2D4BWS6_PYTIN (Helicase ATP-binding domain-containing protein (Fragment) n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWS6_PYTIN)

HSP 1 Score: 237 bits (605), Expect = 1.880e-63
Identity = 142/416 (34.13%), Postives = 229/416 (55.05%), Query Frame = 1 
Query: 1108 SINPSINRYLKEYQREGVKWLYGKFAEGKGAVLGDDMGLGKTVQTISLISAVLHKTGTVRDRE---NLRRRRKEGRPASASG--MPMLIVAPKAVVDGWMEHLEQWGFFEAASLT-KSEQANGVVKSLVSGRLEILVVGYTMLGIVIDKLKSVPFDAVFFDEYHTIKSGATKQAQAASSLDTKRVYGLTGTLMQNKMDELWFLMHLIDPHCLGEQSRFNEHFTEPLKRDRAVNASAADRRLATKRQAELKKIIDRHMLRRTKEEVLSDVLKGKSDTVVFCNVSDVQRDLYLNVLALPEFQLLKRAKEPCDCGRRNAH-RGRCCYKIPVDRRPDSCTAAPHALTXXXXXXXXXXXXXXXXXXXXXXXXGGDGIDPRAVLYRKYHQPDLEECSKCPSCFGLAAVAKLQKIANHPCLLQ 2334
            ++  ++N +L +YQR+GV++L+  +A   GA+LGD+MGLGKT+Q I+ +SA+L K G  RD+E   ++RRRR+E      +G   P+LI+ P +++  W   L  W       L  +    +G++  +  G  EI++  Y ++  ++D+LK + ++A+  DE H +K+  +K  Q+  SL  +R  GLTGTLMQN   EL  L+  I P  LG    F +++ + +K  R  +A+A     + K++ EL++++  + LRR KE         K D VVFC+++ +Q   Y  +LA+PEF+LL+R +E CDCGR +   R  CCY+ P DR  ++                                        RA+L+ ++H PD E CS+CP+C GL  VA+L K++NH  LL+
Sbjct:  282 TVCSNVNSFLFDYQRDGVRFLFDAYARNTGAILGDEMGLGKTIQVIAFLSAMLGKVGDSRDKEMWRDVRRRRRESGCVEVAGGFKPVLIIVPASLLHNWESELHVWMCCHTVILHGRPVDRDGIIDQVSRGEYEIVICSYDIVKFMVDRLKQIDWEAMILDEMHCLKNPESKLTQSVKSLPCRRKLGLTGTLMQNNEKELHCLIDTIAPGVLGTWKEFRKYYGDDIKYGRKKSAAADAVERSRKKEKELRQVLVPYYLRREKEINPCFQEVKKCDQVVFCDLTPLQLAAYKRILAMPEFELLRRGEEQCDCGRDSKRKRKECCYQTP-DRSSEN----------------------------------------RALLWERFH-PDGEACSQCPNCMGLVCVAQLLKLSNHMELLK 655
[Close]
BLAST of mRNA_H-paniculata_contig5002.12237.1 vs. uniprot
Match: A0A7R9YE09_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE09_9STRA)

HSP 1 Score: 232 bits (592), Expect = 1.340e-62
Identity = 145/408 (35.54%), Postives = 210/408 (51.47%), Query Frame = 1 
Query: 1108 SINPSINRYLKEYQREGVKWLYGKFAEGKGAVLGDDMGLGKTVQTISLISAVLHKTGTVRDRENLRRRRKEGRPASASGMPMLIVAPKAVVDGWMEHLEQWGFFEAASLTKSEQANGVVKSLVSGRLEILVVGYTMLGIVIDKLKSVPFDAVFFDEYHTIKSGATKQAQAASSLDTKRVYGLTGTLMQNKMDELWFLMHLIDPHCLGEQSRFNEHFTEPLKRDRAVNASAADRRLATKRQAELKKIIDRHMLRRTKEEVLSDVLKGKSDTVVFCNVSDVQRDLYLNVLALPEFQLLKRAKEPCDCGRRNAHRGRCCYKIPVDRRPDSCTAAPHALTXXXXXXXXXXXXXXXXXXXXXXXXGGDGIDPRAVLYRKYHQPDLEECSKCPSCFGLAAVAKLQKIANHPCLL 2331
            ++  +++R L  +Q EGVKWL  K+ +G+GA+L DDMGLGKT+Q I+ + AVL K+GT  D+          R ASA   P+LIV P ++VD W+E L +WG F   S+          KS      EI V  Y         L  + FD   FDE H +K+  T  ++A++ + ++  +GLTGT +QN  +ELW +MHL        +  + EHF+ PLK  R  +A    ++   +R AELK ++D  ML+R K       L GKSDT+VF ++S+ Q+ +Y N+LALPE QL+ R  EPC CGR +  R +CC+++P D                                         G+ P ++ +R     D   C KCP C  L  V KLQ++ +HP LL
Sbjct:  204 TVPRAVHRLLYPHQVEGVKWLGSKYLQGRGAILADDMGLGKTIQVIAFLLAVLRKSGTDADKR---------RRASACATPILIVCPSSIVDHWIETLVKWGHFRVQSMRS--------KSSGPHHPEIWVCSYHSQR----SLPQMRFDVAIFDEVHKVKNPTTGISKASNEVRSRVKFGLTGTPIQNNYEELWAIMHLTRLTARTAKE-WEEHFSRPLKLARQKDALPETKQRGRRRVAELKAVLDDVMLKRNKSTAPEIKLPGKSDTIVFTSLSEQQKLVYQNILALPESQLISRGNEPCPCGRGDK-RSKCCFRLPSDL----------------------------------------GMRPSSIFWRIRSHVDDTGCEKCPFCCMLPLVMKLQQVCSHPYLL 548
[Close]
BLAST of mRNA_H-paniculata_contig5002.12237.1 vs. uniprot
Match: A0A1Y1HV24_KLENI (Putative SNF2 family N-terminal domain containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HV24_KLENI)

HSP 1 Score: 235 bits (600), Expect = 1.630e-61
Identity = 154/421 (36.58%), Postives = 216/421 (51.31%), Query Frame = 1 
Query: 1066 WLGPFETYDLGAG-ESINPS-INRYLKEYQREGVKWLYGKFAEGKGAVLGDDMGLGKTVQTISLISAVLHKTGTVRDRENLRRRRKEGRPASASGMPMLIVAPKAVVDGWMEHLEQWGFFEAASLT-KSEQANGVVKSLVSGRLEILVVGYTMLGIVIDKLKSVPFDAVFFDEYHTIKSGATKQAQAASSLDTKRVYGLTGTLMQNKMDELWFLMHLIDPHCLGEQSRFNEHFTEPLKRDRAVNASAADRRLATKRQAELKKIIDRHMLRRTKEEVLSDVLKGKSDTVVFCNVSDVQRDLYLNVLALPEFQLLKRAKEPCDCGRRNAHRGRCCYKIPVDRRPDSCTAAPHALTXXXXXXXXXXXXXXXXXXXXXXXXGGDGIDPRAVLYRKYHQPDLEECSKCPSCFGLAAVAKLQKIANH 2319
            W  P ET   GA  E+  P+ IN  L  +QREGV++LY  + E +G + GDDMGLGKT+ TI+ ++A+L K G          R    +P +    P+LIV P +V+  W   L+ WG F   +   KS+++  V+     G LEI +    ML   ID L+ V +D VF DE H +K+ +T+  +A S + T+R +GLTGT++QNK  ELW + H    + LG +  F E++  PLK  + ++A     +LA +RQAEL + +  H LRRTK+E ++  + GK+D V+FC +S +QR +Y  VL  P+FQLL R  EPCDCG     RG CC+           TAA                               DGI     LY   H        KCP C  L  +  L KI+NH
Sbjct:  117 WPPPGETLPAGAAPEAKVPAYINSRLLPHQREGVRFLYMLYRENRGGIEGDDMGLGKTIMTIAFLAAILKKEG----------RPDYLKPPTKVERPVLIVTPTSVLSNWERELDDWGPFRVGTFGGKSKES--VLSRAQRGELEICLASIAMLAQNIDDLREVDWDCVFVDEAHVLKNDSTQFYKAMSRIRTRRRFGLTGTVLQNKYKELWCIFHWAAENSLGSKKSFQEYYEHPLKLGQRIHAPLPLIQLARERQAELLRALRPHFLRRTKDETIAHAMHGKADNVIFCRMSPLQRSVYRRVLESPDFQLLVRLNEPCDCGSGEV-RGNCCH-----------TAAE------------------------------DGI-----LYHYLHGIGNPNPHKCPYCMTLPCLQILLKISNH 478
[Close]
BLAST of mRNA_H-paniculata_contig5002.12237.1 vs. uniprot
Match: A0A8K1CPK2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPK2_PYTOL)

HSP 1 Score: 234 bits (597), Expect = 4.900e-61
Identity = 145/425 (34.12%), Postives = 225/425 (52.94%), Query Frame = 1 
Query: 1096 GAGESINPSINRYLKEYQREGVKWLYGKFAEGKGAVLGDDMGLGKTVQTISLISAVLHKTGTVRDRENLRRRRKEGRPA-SASGM---------PMLIVAPKAVVDGWMEHLEQWGFFEAASLT-KSEQANGVVKSLVSGRLEILVVGYTMLGIVIDKLKSVPFDAVFFDEYHTIKSGATKQAQAASSLDTKRVYGLTGTLMQNKMDELWFLMHLIDPHCLGEQSRFNEHFTEPLKRDRAVNASAADRRLATKRQAELKKIIDRHMLRRTKEEVLSDVLKGKSDTVVFCNVSDVQRDLYLNVLALPEFQLLKRAKEPCDCGRRNAH-RGRCCYKIPVDRRPDSCTAAPHALTXXXXXXXXXXXXXXXXXXXXXXXXGGDGIDPRAVLYRKYHQPDLEECSKCPSCFGLAAVAKLQKIANHPCLLQ 2334
            G   ++  +IN YL  YQREG ++L+  +A+  GA+LGD+MGLGKT+Q I+L+SA+L K G  RD+E+ R+ R E R   S +G          P+LIV P +++  W   L  W       L  K E+   ++  +  G  E+++  Y +L I +D+++  P+DAV FDE H +K+  +K  QA  ++  KR  GLTGTLMQN   EL  L+  I P  LG   +F  ++ + +K  R  +A+      + K++ +L++++  + LRR KE   S     K D VVFC+++  Q   Y  +L +PEF+LL+R +E CDCGR +A  R  CCY+ P                                           G + RA+L+ ++H  + E C+ CP+C GL  +A+L K++NH  LL+
Sbjct:  431 GEDLTVCANINSYLFSYQREGAQFLFNAYAQHTGAILGDEMGLGKTIQVIALLSAILKKQGDYRDKESWRQLRTERRARRSENGATFSENDGPNPLLIVVPASLLHNWESELHVWMSCATVILHGKPEERERLLDQIERGEHEVVICSYDILKITLDRIRRTPWDAVVFDEMHCLKNPESKLTQAVKNIPCKRKLGLTGTLMQNNEKELHCLIDTIAPGVLGSWQQFRSYYGDDIKYGRKKSAAPEAVERSRKKEKKLRQVLVPYYLRREKEINPSFQEVKKRDQVVFCDLTPYQLAAYERILEMPEFELLRRGEELCDCGRDSARKRKECCYQTPASM----------------------------------------GTNQRALLWERFHS-NGEACNSCPNCMGLVCMAQLLKLSNHMELLK 814
[Close]
BLAST of mRNA_H-paniculata_contig5002.12237.1 vs. uniprot
Match: A0A8J9SP64_9CHLO (DNA excision repair protein ERCC-6-like 2 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SP64_9CHLO)

HSP 1 Score: 232 bits (592), Expect = 1.270e-60
Identity = 151/413 (36.56%), Postives = 216/413 (52.30%), Query Frame = 1 
Query: 1120 SINRYLKEYQREGVKWLYGKFAEGKGAVLGDDMGLGKTVQTISLISAVLHKTGTVRDRENLRRRRKEGRPASASGMP--MLIVAPKAVVDGWMEHLEQWGFFEAASLTKSEQAN-GVVKSLVSGRLEILVVGYTMLGIVIDKLKSVPFDAVFFDEYHTIKSGATKQAQ-------AASSLDTKRVYGLTGTLMQNKMDELWFLMHLIDPHCLGEQSRFNEHFTEPLKRDRAVNASAADRRLATKRQAELKKIIDRHMLRRTKEEVLSDVLKGKSDTVVFCNVSDVQRDLYLNVLALPEFQLLKRAKEPCDCGRRNAHRGRCCYKIPVDRRPDSCTAA-PHALTXXXXXXXXXXXXXXXXXXXXXXXXGGDGIDPRAVLYRKYHQPDLEECSK--CPSCFGLAAVAKLQKIANH 2319
            SINRYL+EYQREG+++L+ ++A  +GA+L DDMGLGKTVQTI  ++A+L K GT  D + +R        A A+  P  +LIVAP +VV  W      WG F  A    S  +    ++S+  G  EI++  Y  L   ID ++ + + A  FDE H +K+  T           AA+SL TKR YGLTGT MQN   ELW L+H  +P  +G+  +F + + +PLK  +  + +      A +RQ  L K++ + MLRRTKE  + D L  K+D +VFC ++ +Q   Y  VL  P+FQLL R++E CDCG     R +CCY    + RP+      PH                             +  +P+     K H+P+  E  +  CP C  L  +  LQKI+NH
Sbjct:  232 SINRYLREYQREGIQFLFRQYAANQGAILADDMGLGKTVQTIGFVAAILGKMGTNADLQPVR--------ADANARPKLILIVAPSSVVTNWQREFSTWGAFRVAIYHGSSSSKEAAMQSINHGTAEIILTTYDTLRNNIDMMREIDWHAAIFDECHKLKNKRTTTKSDNISTYGAANSLRTKRRYGLTGTAMQNDYGELWSLLHWANPTRMGDWEQFQDFYVKPLKEGQRRDCTDLQLAKAHQRQERLDKLLQQFMLRRTKESTIKDQLPKKTDNIVFCKLAALQMRAYRRVLNTPDFQLLVRSEEQCDCGSGEI-RAKCCY---TEARPEEGGVLWPH------------------FHRCTCDNAYDECSNPKGC---KRHRPNGCEFGRLRCPYCLVLPCLTILQKISNH 611
[Close]
BLAST of mRNA_H-paniculata_contig5002.12237.1 vs. uniprot
Match: K7FV01_PELSI (Uncharacterized protein n=4 Tax=Cryptodira TaxID=8464 RepID=K7FV01_PELSI)

HSP 1 Score: 226 bits (575), Expect = 3.520e-60
Identity = 146/361 (40.44%), Postives = 211/361 (58.45%), Query Frame = 1 
Query: 1024 LDDEDL-KPNISNPTWLGPFETYDLGA-GESINPSINRYLKEYQREGVKWLYGKFAEGKGAVLGDDMGLGKTVQTISLISAVLHKTGTVRDREN------LRRRRKEGRPASASGMP---MLIVAPKAVVDGWMEHLEQWGFFEAASLTKSEQANGVVKSLVSGRLEILVVGYTMLGIVIDKLKSVPFDAVFFDEYHTIKSGATKQAQAASSLDTKRVYGLTGTLMQNKMDELWFLMHLIDPHCLGEQSRFNEHFTEPLKRDRAVNASAADRRLATKRQA--ELKKIIDRHMLRRTKEEVLSDVLKGKSDTVVFCNVSDVQRDLYLNVLALPEFQLLKRAKEPCDC--GRRNAHRGRCCYK 2061
             DDEDL KP   +     P   Y+L A G+SI  +INRYL++YQR+GV++LYG +A+ +G +LGDDMGLGKT+Q IS ++AVLHK GT  D EN      LR  +KE      + MP    LIVAP +V+  W + L+ WG+F    L  S + N + + +  G+ EI +  Y  L + +D+L S+ + AV  DE H IK+   +  Q   +L      GLTGT++QN M ELW +M    P  LG ++ F + F++P+  +     +A  R LAT R+A  +L K +    LRRTK  ++ D L  K D +V+C++++ Q+ +Y  VLA  +  L+ RA+EPC C  GR+   R  CCYK
Sbjct:   69 FDDEDLEKPYFPDQRLPSPAVAYELSADGDSIPYTINRYLRDYQRDGVQFLYGHYAQKRGCILGDDMGLGKTIQVISFLAAVLHKKGTREDIENNMPEFLLRTVKKE-----LTDMPKKTFLIVAPLSVLYNWKDELDTWGYFRVTILHGSRKDNELSR-IKQGKFEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKAQITQTMKALKCSVRIGLTGTILQNNMKELWCVMDWAIPGLLGSRTHFKKEFSDPV--EHGQRHTATRRELATGRKAMQKLAKKMSGWFLRRTKALII-DQLPKKEDRMVYCSLTEFQKQVYQAVLATEDVSLVLRAREPCGCSSGRK---RKNCCYK 417
[Close]
BLAST of mRNA_H-paniculata_contig5002.12237.1 vs. uniprot
Match: UPI00112704D4 (DNA excision repair protein ERCC-6-like 2 isoform X3 n=1 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112704D4)

HSP 1 Score: 226 bits (575), Expect = 4.680e-60
Identity = 141/358 (39.39%), Postives = 210/358 (58.66%), Query Frame = 1 
Query: 1024 LDDEDL-KPNISNPTWLGPFETYDLGA-GESINPSINRYLKEYQREGVKWLYGKFAEGKGAVLGDDMGLGKTVQTISLISAVLHKTGTVRDREN------LRRRRKEGRPASASGMPMLIVAPKAVVDGWMEHLEQWGFFEAASLTKSEQANGVVKSLVSGRLEILVVGYTMLGIVIDKLKSVPFDAVFFDEYHTIKSGATKQAQAASSLDTKRVYGLTGTLMQNKMDELWFLMHLIDPHCLGEQSRFNEHFTEPLKRDRAVNASAADRRLATKRQA--ELKKIIDRHMLRRTKEEVLSDVLKGKSDTVVFCNVSDVQRDLYLNVLALPEFQLLKRAKEPCDC--GRRNAHRGRCCYK 2061
             DDEDL KP   N + LGP   + L   G+ +  +INRYL++YQREGV++LYG + +G+G +LGDDMGLGKT+Q I+ +SAVL K GT  D EN      LR  +++   + AS    LIV P +V+  W + L+ WG+F  A L  +++   + + +  G+ E+ +  Y  L + +D+  S+ + AV  DE H IK+   +  Q   SL  K   GLTGT++QN M+ELW +M    P CLG ++ F + F++P+  +     +A  R LAT R+A   L + +    LRRTK  ++S+ L  K D +V+C+++D Q  +Y  VL   +  L+ RA+EPC C  GR+   R  CCYK
Sbjct:   85 FDDEDLEKPFFRNRSSLGPAAAFQLSEDGDCVPYTINRYLRDYQREGVQFLYGHYGQGRGCILGDDMGLGKTIQVIAFVSAVLRKKGTREDIENNMPEFLLRSMKRQS--SVASKKMFLIVTPLSVLFNWKDELDTWGYFRVAVLHGNKRDTELSR-VKQGKCEVSLTTYETLRLCLDEFNSIEWSAVIVDEAHRIKNPKAQVTQIMKSLKCKVRIGLTGTILQNNMEELWCVMDWAVPACLGSRTLFKKKFSDPV--EYGQRHTATKRELATGRKAMQSLARKMSSLFLRRTKS-LISNQLPKKEDRIVYCSLTDFQMAVYQTVLDTEDVSLVLRAREPCCCNSGRK---RKNCCYK 433
[Close]
BLAST of mRNA_H-paniculata_contig5002.12237.1 vs. uniprot
Match: A0A6P8QA92_GEOSA (DNA excision repair protein ERCC-6-like 2 isoform X6 n=2 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8QA92_GEOSA)

HSP 1 Score: 225 bits (574), Expect = 6.330e-60
Identity = 141/357 (39.50%), Postives = 205/357 (57.42%), Query Frame = 1 
Query: 1024 LDDEDL-KPNISNPTWLGPFETYDLGA-GESINPSINRYLKEYQREGVKWLYGKFAEGKGAVLGDDMGLGKTVQTISLISAVLHKTGTVRDREN------LRRRRKEGRPASASGMPMLIVAPKAVVDGWMEHLEQWGFFEAASLTKSEQANGVVKSLVSGRLEILVVGYTMLGIVIDKLKSVPFDAVFFDEYHTIKSGATKQAQAASSLDTKRVYGLTGTLMQNKMDELWFLMHLIDPHCLGEQSRFNEHFTEPLKRDRAVNASAADRRLATKRQA--ELKKIIDRHMLRRTKEEVLSDVLKGKSDTVVFCNVSDVQRDLYLNVLALPEFQLLKRAKEPCDCGRRNAHRGRCCYKI 2064
             DDEDL KP   +   LG    + L   G+ I  +INRYL++YQREG ++LY  F +G+G +LGDDMGLGKT+Q I+ +SAVLHK GT  D EN      LR   K+   + AS    LIV P +V+  W + L+ WG+F  A L  +++ +  +  +  G+ EI +  Y  L + +D+  S+ + AV  DE H IK+   +  Q   SL  K   GLTGT++QN M+ELW +M    P CLG +SRF + F+ P++  +   A+   R LAT R+A   L + +    LRRTK+ ++S+ L  K D +V+C+++D Q  +Y  VL   +  L+  A+EPC C      R  CCYK+
Sbjct:   85 FDDEDLEKPYFRDRNPLGHATAFKLSEDGDCIPYTINRYLRDYQREGAQFLYRHFDQGRGCILGDDMGLGKTIQVIAFMSAVLHKKGTREDIENNMPEFLLRSMNKQ---SVASRKMFLIVTPLSVLFNWKDELDAWGYFRVAVLHGNKK-DSELSRVKQGKYEISLTTYETLRLCLDEFNSIDWSAVIVDEAHRIKNPKAQVTQIMKSLKCKVRIGLTGTILQNNMEELWCVMDWAVPGCLGSRSRFKQKFSGPVEYGQRYTATK--RELATGRKAMQRLARNMSSLFLRRTKD-IISNQLPKKEDRIVYCSLTDFQMAVYQTVLNTEDMSLILHAREPCSCNN-GRKRKNCCYKV 433
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5002.12237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX84_ECTSI5.160e-15352.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FIQ3_ECTSI8.230e-8942.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2D4BWS6_PYTIN1.880e-6334.13Helicase ATP-binding domain-containing protein (Fr... [more]
A0A7R9YE09_9STRA1.340e-6235.54Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A1Y1HV24_KLENI1.630e-6136.58Putative SNF2 family N-terminal domain containing ... [more]
A0A8K1CPK2_PYTOL4.900e-6134.12Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8J9SP64_9CHLO1.270e-6036.56DNA excision repair protein ERCC-6-like 2 n=1 Tax=... [more]
K7FV01_PELSI3.520e-6040.44Uncharacterized protein n=4 Tax=Cryptodira TaxID=8... [more]
UPI00112704D44.680e-6039.39DNA excision repair protein ERCC-6-like 2 isoform ... [more]
A0A6P8QA92_GEOSA6.330e-6039.50DNA excision repair protein ERCC-6-like 2 isoform ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5002contigH-paniculata_contig5002:1294..11357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score493.0
Seed ortholog evalue2.5e-136
Seed eggNOG ortholog2880.D7FX84
KEGG koko:K11130,ko:K20098
KEGG Pathwayko03008,map03008
KEGG ModuleM00425
Hectar predicted targeting categoryother localisation
EggNOG free text desc.histone H2A-H2B dimer displacement
EggNOG OGsCOG0553@1,KOG0387@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03032,ko03400
Exons7
Model size2336
Cds size2334
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930473.8118203-CDS-H-paniculata_contig5002:1295..16291622930473.8118203-CDS-H-paniculata_contig5002:1295..1629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5002 1296..1629 -
1691481307.6990023-CDS-H-paniculata_contig5002:1295..16291691481307.6990023-CDS-H-paniculata_contig5002:1295..1629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5002 1296..1629 -
1622930473.823467-CDS-H-paniculata_contig5002:3332..34571622930473.823467-CDS-H-paniculata_contig5002:3332..3457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5002 3333..3457 -
1691481307.7142355-CDS-H-paniculata_contig5002:3332..34571691481307.7142355-CDS-H-paniculata_contig5002:3332..3457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5002 3333..3457 -
1622930473.8396358-CDS-H-paniculata_contig5002:4443..45841622930473.8396358-CDS-H-paniculata_contig5002:4443..4584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5002 4444..4584 -
1691481307.7269387-CDS-H-paniculata_contig5002:4443..45841691481307.7269387-CDS-H-paniculata_contig5002:4443..4584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5002 4444..4584 -
1622930473.8619351-CDS-H-paniculata_contig5002:6172..64511622930473.8619351-CDS-H-paniculata_contig5002:6172..6451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5002 6173..6451 -
1691481307.7419245-CDS-H-paniculata_contig5002:6172..64511691481307.7419245-CDS-H-paniculata_contig5002:6172..6451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5002 6173..6451 -
1622930473.8779967-CDS-H-paniculata_contig5002:7802..79811622930473.8779967-CDS-H-paniculata_contig5002:7802..7981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5002 7803..7981 -
1691481307.7601244-CDS-H-paniculata_contig5002:7802..79811691481307.7601244-CDS-H-paniculata_contig5002:7802..7981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5002 7803..7981 -
1622930473.8945193-CDS-H-paniculata_contig5002:8697..88151622930473.8945193-CDS-H-paniculata_contig5002:8697..8815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5002 8698..8815 -
1691481307.7704806-CDS-H-paniculata_contig5002:8697..88151691481307.7704806-CDS-H-paniculata_contig5002:8697..8815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5002 8698..8815 -
1622930473.9094293-CDS-H-paniculata_contig5002:10199..113571622930473.9094293-CDS-H-paniculata_contig5002:10199..11357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5002 10200..11357 -
1691481307.7792013-CDS-H-paniculata_contig5002:10199..113571691481307.7792013-CDS-H-paniculata_contig5002:10199..11357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5002 10200..11357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5002.12237.1prot_H-paniculata_contig5002.12237.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5002 1296..11357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5002.12237.1

>prot_H-paniculata_contig5002.12237.1 ID=prot_H-paniculata_contig5002.12237.1|Name=mRNA_H-paniculata_contig5002.12237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=778bp
RPSSDGGWPETKRCTPPNLKFRSRSRSRSSPPSEKRTVGVDRKGKASTTA
LARAPGNTNRRTFHANGVHSATGGNRHSPTAPMGNDGGGGGNGDRNTSSG
SSSDSMFDIDHRETNADRTTTESRISRIKTGLKRGRTPPVRSPGDDRSYY
SSDNGNNDSTVDGVDNADAGGGGSMFRGGKTGRNERYPAPVPRRPRSSSL
SLSPSRFTAFDGDCNSADDTPSAVASLSPKSAAGGRNGNDSYLASSRRRR
RRRSSRSRETVAGRRGVKRGLEEENLHDGIEAMRVASDDELSSVRSNAGG
IGGVRRGKERMGGAVERGDRAAAWSANCEDQEEEHSEDDDYLDDEDLKPN
ISNPTWLGPFETYDLGAGESINPSINRYLKEYQREGVKWLYGKFAEGKGA
VLGDDMGLGKTVQTISLISAVLHKTGTVRDRENLRRRRKEGRPASASGMP
MLIVAPKAVVDGWMEHLEQWGFFEAASLTKSEQANGVVKSLVSGRLEILV
VGYTMLGIVIDKLKSVPFDAVFFDEYHTIKSGATKQAQAASSLDTKRVYG
LTGTLMQNKMDELWFLMHLIDPHCLGEQSRFNEHFTEPLKRDRAVNASAA
DRRLATKRQAELKKIIDRHMLRRTKEEVLSDVLKGKSDTVVFCNVSDVQR
DLYLNVLALPEFQLLKRAKEPCDCGRRNAHRGRCCYKIPVDRRPDSCTAA
PHALTTTTAAWSSSPAAATAAAVVYGGGAGGDGIDPRAVLYRKYHQPDLE
ECSKCPSCFGLAAVAKLQKIANHPCLLQ
back to top

mRNA from alignment at H-paniculata_contig5002:1294..11357-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5002.12237.1 ID=mRNA_H-paniculata_contig5002.12237.1|Name=mRNA_H-paniculata_contig5002.12237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10064bp|location=Sequence derived from alignment at H-paniculata_contig5002:1294..11357- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCCGAGCTCGGACGGCGGGTGGCCGGAAACCAAGCGGTGCACCCCGCC
GAACCTAAAATTCCGATCCCGATCCCGATCTCGATCCTCTCCGCCCAGCG
AGAAGAGAACCGTTGGCGTCGACAGGAAGGGTAAAGCGTCCACAACGGCG
TTGGCGCGGGCGCCAGGGAACACGAACCGCCGAACATTCCACGCGAATGG
TGTCCATAGCGCGACCGGAGGGAACAGGCACTCGCCGACAGCACCAATGG
GTAACGATGGCGGCGGCGGCGGCAATGGGGATAGAAATACGTCTAGCGGA
AGCTCCAGCGATTCGATGTTCGACATAGACCACCGAGAAACAAACGCAGA
TCGGACAACTACGGAGAGCAGAATAAGCAGAATAAAAACAGGTCTGAAGC
GAGGGCGAACACCACCGGTGAGATCCCCAGGCGATGACCGCAGCTACTAC
AGCAGCGATAATGGCAACAACGACAGTACAGTGGATGGCGTCGACAATGC
GGATGCGGGGGGGGGGGGGAGCATGTTTCGGGGAGGCAAGACCGGGCGCA
ACGAGCGATACCCTGCCCCCGTCCCCCGCCGTCCCCGCTCGTCTTCCTTG
TCGCTCTCCCCCTCGCGTTTCACCGCCTTCGACGGTGATTGCAATAGCGC
CGACGATACGCCATCTGCGGTGGCGTCGTTATCGCCAAAGTCTGCAGCCG
GTGGGAGGAACGGTAACGATAGTTATTTAGCTTCGTCCCGGAGGCGGCGG
CGGAGGAGATCTAGTCGTAGTCGAGAGACTGTTGCTGGACGTCGCGGGGT
CAAACGTGGGCTGGAGGAGGAAAACCTACACGACGGGATCGAGGCCATGC
GCGTCGCGTCGGACGACGAGTTGTCGAGCGTTCGCAGTAACGCCGGTGGC
ATCGGCGGCGTTCGGCGGGGCAAAGAGAGGATGGGAGGAGCCGTGGAGAG
AGGGGATCGGGCGGCGGCGTGGTCGGCGAATTGCGAGGACCAAGAAGAAG
AGCATTCAGAAGATGATGACTACTTGGATGACGAGGATCTCAAGCCCAAC
ATTTCAAACCCGACCTGGCTGGGGCCATTCGAGACGTATGACCTGGGCGC
TGGCGAGTCTATCAACCCTTCCATCAATCGCTACCTGAAAGAGTACCAAC
GAGAAGGGGTGAGAGAGCTGCGTACAACTCAACCACAGACAGTGTGAACA
TAGTATATATATATATACATACTTACGTACAGTAAATACACGCAGTACTG
GTTCATACAGCACGGTACAGGGCATGGGTTTCCACCCTGGACTAGGTGTG
CCTAGACGGGGTTTTGACAATCTAGCCGTTTCCTTCATGCGTTCGAGCAA
CGGATATGCGTATACCGTGCTGTGGGTTAGGTGGGTTTTAGGGTACATGG
CGCCGCGGGTGATAAAAACGATTTGTCACACCCCAGTTTTCTCGACGTAT
TTATTTGGACTGGACTGGCTGTCTGAATAGCGGTGGTTCCGCGTATATCC
TCGTTCTCATGTCATGTCCATTGTTTTCTTTCTCATCTGAGGTGTGAATT
TTGTGAGGAAACCGGCGTCACAAGGGTGTTCTTAAATGCTCAAAATGAGC
ATATATATAAGAACCGGATACGCGCGCACGCCCCGAAACCAGCGACACGG
TTTGTACCCTAATTCTTCCCCCAACTATTCAACTTGTTCTGTTTAAGTAT
TGTCATTATTTAGTTTTGACAAAATCAGATCGTCGTTCGTATCGTTCTCA
CCTATGATACTAATACTTGGTTGTCGGGACTTAGATGACCTTCACGTTTT
TGATGTACCTTTTTTCCGGCGTGGATGTACCGAAAAAGTTACATGAACCC
CTGTGGAATAATACTGTACAATATATCATGCCTTTCTTGCACTTGATGTA
TTCGTCCTATTCCATTATGTGAGAAAGGCCGTGTACCTCCCTGTGGCGAA
TGTGCCCGGAGAGCGCTCAAGCTCCCGCGTTGAAATGGAGCACTCTTCAC
CCACCACACCTCATCAATCATTTTTTGTGATCAGCACTCGCTTGACCCTG
ATCCCTACCGCCCCTGTGGAGCAAGCACCCCCATTGTTGCCAGAGCATGT
CACGCTGAATAACCTCCCCCCCCCTCGATCATATCATTTTTTATATAAAA
AAGATTCCCATCTCGAAAAAAACTACTGCACACAGAAATGGCGCTCTCTT
CCGGCGACACCCGAAGATATGTCGTTAGAAAGGTGAACATAAAACATTCT
GTTGCCCGGATACGAGGATACGAGGATACGAAGATTTTACTTTCAATTAT
AGTGTTGAAACACACATACACACAAACAAACACACCTTTCACATAAAATA
CAGTAGAAGCCTCTTTCTAACTTGTTTTGACCGACGTTTTTCATCCTTGA
ACAAGTAGAAGATGAAACAAAATGTGGTAAAAGTGCGTTCGAATCTCAAA
AAATTATTTTGGAATAAAGAACAAAAACAGATATGTATATATTTATAATA
TATATATATATATTATATATATACATGAACATATATGAACAGGTCAAGTG
GCTATACGGAAAGTTTGCCGAAGGGAAGGGAGCGGTGCTTGGAGACGACA
TGGGCCTCGGGAAAACAGTCCAGACCATCTCTCTCATTTCGGCTGTTCTG
CACAAGACCGGTGAGAAAATTCATGTGTATCCGTATCTGTATCTTTATGT
CCTTAGTCTGGAGAATACATTCTCGAGGTTCCTCTAGTTCCTGAGTTTCT
TGAATCTCGACCCCCTTACACAAGAACCCGTGGCGCTTTGTCACAATATT
GGATCATATTTCCTAGCTGTTTCTGACCCTGGATAATGATCACTTCGTTC
ATCAACTTAAGGGGAAAAGAACAAATGTGTGCTCCTCACTACATTTCCCA
AAGCTTGGAAATAATTCCCTCGAGCAGGCAGGCGGTGTCCGCTCGAGGGC
CAGTCTTTCCTGTGAGCATCGTCTTCTACATGACTATTAATAGCGAGTTG
AAAAGAATACGAACAAAGTTATGGTCATGATCCAACACGCCTCGACAGGA
GGGGAGATAAAGGGCGCGATTTATTTGAGGCTTTGTTGACGCGATCTGCG
AGCTACATTAACCTAATTTCAGCATGATATATATATATGTACGTGCGTTA
TTCTGGAAATGCCAAAAAAAATGTGACATTTTTAGCACCAGGGGGGTTTG
GCTGTTTTCCCGCCGGTTCTAGAGTTATGGTTGGGTGCATTGTGTGTATA
AGAGTGTTGGGGGCTTACCCTATCCATTAATTAACGTTCTTTATACTAGC
CCCCCTCCACCCTTATTGAAGCTCCCCATCATCACCACCACCACCACCAC
CACCACCACCACCCGTCCATATACAGGCACGGTGCGAGACAGGGAAAATT
TAAGGCGTCGCCGCAAGGAAGGTCGCCCGGCTAGCGCAAGCGGGATGCCG
ATGCTCATCGTGGCCCCTAAGGCCGTGGTGGACGGTTGGATGGAACACCT
GGAACAGTGGGGTTTCTTTGAGGCTGCTAGTCTCACCAAGAGCGAGCAGG
CTAACGTGAGAGAGACAGAGACAGTTACAGAGACAGATGTATAACGTTTT
CATTTTTTGTATGTTGTAGAATGTTACTAAAGTTAGCTTTTTCGATCATT
GTAAAGATTCAATTTTTTCAAGAGGTTTGGAGTCTATTAGATAGACTTCA
TATATTATATATTTTAATTGTAGATTTTTTTTTAACGTATTTTTTTGCAA
CTTTTACCATCAAGATTTTTCACGAATGCAGAGTTCAGATTTCTTCAATT
TTTAGATTTCACTCTGTCATAATTTTTTCAAGATTTCAGATTGGTTTGTG
AACGTGGGTGCAGTCCGAGAGGTGGCGCTTGCCCCGCCCCCCCTTTTATT
ACTGCGTTGCAAATGTCATGAGAAAGGAGATAGTCGTACGATAGCAATTT
CCTACTACTGGTGAAAAAGTGACTCTCTGGATTCATCCTATTCATTCATG
CAACACGATAATTTAGGTCATGATGATCGTCGCTGTTCCAGAAAATTTTG
TTCAATCTGTAATCAAGTAATTCATGAAAAAGGAATCTCGACGCTAGCGA
AGTGAGTCCTGTGGATCGAGGACAAGGACGAGTTATCACTTGGTCATACT
CTAGGCTCCACTACTACTCCTATGGTGTTTGCAAATTTTGGTTTGATCGT
ATGTGTAGCCAACAGCGAGCTAGCTCCTCGTCCCGGACCACAGCTTACCC
ATGCCAACGTCTCGTTTTGATGGGAAATCCTTTCGAAGCTCGTCTGCTCC
GTGAGAGATTCGAATAGTCACTGAATGTGACGAGGGTTGCGTTCTCTAAC
GGGACATTGGTGTAGTGACGAGGAGCTAACTCATTGATAGCTATGCATGA
CCAAATCGACATTTGCGAAGATGTTTTGTTTTGCCCACTCTGCTAGTGCT
ATATCTCGGAAATCAAATGCGTATGCTCAGACTGCAGGATGTACAATATA
CAATTGGAGCGGTTGTGGCCAAATGCTACTATTACAAGTACATGGCTAAC
CTGTAAGGCAACGGATGGTTTTGTGATGGTCGTTGTTGATGGCAGTGGGT
GTTTCGTTGGAGCTTCAAGTTGAAGTTGCGCTGTTTGTGGTTAAATGTAT
GAGACGAGAGTGCCGTGCAGGTAATAATTTTGTCCTAAGCCGCTTTATCG
CTCTACTCACGATACATAAAGGAGTTTTATGTGATCTTGTTAATAGCCCC
GGCTATATCCGACACGCCTCGTTCTGTACGAGATATGTGTTGTCTTTCTT
GGGAGTCATTGTCCAAACCCTGTCCGGGCTTTTGTCACACTACTTATTCT
TTGATCTGCGTGCCCCCCCCCCCCCCCCTATTTTGGGTTGATTGCTTCGA
GATCAGGGTGTGGTGAAGTCCTTGGTGTCTGGGCGACTGGAGATTCTGGT
GGTGGGCTACACCATGCTAGGTATCGTTATCGACAAGCTGAAGAGTGTCC
CCTTCGACGCCGTCTTTTTCGACGAATATCACACCATCAAGTCGGGGGCG
ACGAAGCAGGCGCAGGCGGCGAGCTCACTTGACACGAAGCGCGTGTACGG
GCTGACGGGCACGCTGATGCAGAATAAGATGGACGAGTTGTGGTTCCTGA
TGCACCTGATCGACCCGCATTGTCTGGGAGAGCAGGTAGAGAGGGGGGGA
GAGATCATTCGTGTGTATAACGATGTCGCTAGTGTGGGTAATAGGCAGAG
TGGACGCAGGTTAACACGGGAAAAGAGTGGACGCAGGTTAACCCTAACCC
TAACCCTAACCCTAACCATGGAATATAAAATAAAATAACAAAAAAACCCG
ACACATGCCGTGAACTCGCAAGATGTTCACGACTTGTAGTTTTACAAGAT
GAATCTGTATAAATGATGAGGTGACCACGGACCTACGCCCGAACGGGTAG
GGTAGCTCGTGAACTGAGCATGAGTGGAAGTCTAGTCAGAGGTCTTTTAG
TGGGTGCAACCTCCACACTGCCTATACCTGGTTTAGCCGAACCAGTGTGG
CGCCTACCCCGCAGAGGAACAAATAACTCTGTTCTGTAAAAGGATATGTA
GAAATACTTCGGTGTGGAAGGATCGGATAGAGGTTTTTGCCTTAGCCTTC
CGGGGGTTAAAAAAATAAATAAACGGTGAGGTGATTTACCCTATAGTGGT
CGATTAATCATGCCTTTCTATATATGCTTTGAAGAATATGCTCGCCAGCA
GCGTGCAAAACACAAATGGGAGGGTTGAACAATCACTTGACCTACGAAGC
CTAGTCTCATAAACCAACCTGTTCTTGCATAACTGTAGCATGCACGGGAA
ATGTATCCATGTGGTGTTGGGGATTTCCAATAAAATATTTTCGTACATTT
GTTGATCCCAATCTAAAACCCTGGAGAGAACATTGCTATCATTATATCCA
TTGGTGCCTTTGTCCACAATAGCATGACGGTGAAGTTGTGCACGCTCGTC
ATGTTTCATGCTCGCCACATCTGATGCAACCCCCCCCCCCCCCTATCGGT
CATTGTCTAAATTTGCTGAGAAGTATACACAATTGACATTTGTTGAGGTC
AGGTACATAACCTCAACATGGGTATGATGGAGTTATCATGTAAGCATTAG
AGACCTACTTTTCGTGGTACCCCCCCGCCCCCCCCCAATTTTATTTGACT
TGTGCATAAGTAATCCAACAGCTTGAAGACGCTGAGCATACCTCCGCTTT
GTATTACGATTATTGGCATATTTTCTACAGCACTGCTTGTAGCTATGACT
TGCTCTTTACTCTATGATACTTTGTCCAACCCGCGTTCTCATAGTATAGA
CGCTGCTTCCCTGATAAAGCTGTCCTTGGCCATTGATGCATGTGTTGATT
CCGCTATGTTGTAATTGTTGGAGGTTTCTTACTCTTGCACGAAGTGCAGT
ACTGGTCATGTCCTTACTTGTGCATGTTGCTGCTGCCATGTATTATATAG
TGTGCAGATTTGATATAAGCCTCGACCATCTTATGCACACGAAGTATCAA
ATCCAACTCCTTTATTCACCTGCACCTAGTAGTAATAGTAGTAGTAGTAG
TAGTAGTAGTAGTAGAGCGGCAGCAGGAGCACGGTATAAGCGAGGGGAGC
AAGCACTTGTTGTTCGTGTGTAGCACTCCTGGCCAAGCGGATATCAATCT
TCAACGATAGCGCCGGCCTGAACGCTATCTAGAAAATCTCCCCCCTCCTC
GGCGTGCGCATGGCAACCTCCAGTCGAGGTTCAACGAGCACTTCACGGAG
CCGCTGAAGCGGGACAGAGCCGTGAATGCGTCGGCGGCAGACAGGAGGCT
CGCGACCAAGCGCCAGGCCGAGCTCAAGAAAATCATCGACAGGCACATGC
TCCGCCGCACCAAGGTACGATAAAATCGCGCGGGTTAGCGCTAGGAGGGC
GAGGCCTACTATGCATGGGTCGTTTTCTCGAGAGGAGGGAACGGAGGAGG
GGGGCGTGTCACCCACCCCCGGGGTAACTTGCGAATTAACCTTCCCTCGC
ACCGCAGGGTCAAGCTGTCTTGTGATTTGTCACCAAGTTGAAGTTGTTTT
TTGTATACTCGTATATTGTTGGTACATCTCACATTGATGGTACAACGTAA
CCTACAAACAACCGTGGCTATGGATCTCTACACGTTCATCCATAACTTGG
GGTCACACTAAGTGGTCGCCCTGGGCAGCTAGCTGCCCGAAGCAGCTCAG
ATTAGCTAAGCTGACTGCGATACAAACGTGCTACTATGCTCCTTCGTAAT
TTGATTTTTTGCGATGTCTTGCCGGCTACAAGGAGAACGGTGAAATGACT
CGCCTCTAAATAATATTCCGGGTTATTTTAGGCTCATATCTCGGTAGATA
CGCACGTACAGTAGGTTAGTTGTATCGGAATAAATATAGGTGATTGAGCC
CGACGTGGTGACGATGATTGGCGTGCGTGTGCAGGCTATGTTTGAAACTG
TAATGTACTGTGATAAGTTAGAGGGGGACACGGGCTGTCTTTTTTTGTTT
GTTTTTTCTGTTGCTTGATTGTTGGGTGGTTGGGTTGGTGATTTTATTGA
GGGTTTCAAAGTTGCTCTTTAGGGTTACTTGCTGACCTTTCGCTTTTTTC
CCTTCTTCTGCGGCCAAAATCCCTTTCGATCCTCCAGTTATATATTTATC
TGTATCTGTCTCTATCTGTCTCTACCTGTCTATATCTGTCTATATCTATC
TGTCTGTCTGTATACCGTTCCATTTGTCTATATGCCTGTCTGTTTTATTT
GCTTGTCTGTCTGTCGTTCCGTGCGTAATCATATTTGTTTTACCCATCAT
GGGGCGTTTGCGCGTTGTGTGCTGTGTTGGCTCGATCGGCGGCGGGGCAG
GAGGAGGTGCTGTCAGATGTGCTCAAGGGCAAGTCGGACACGGTGGTGTT
CTGCAACGTGAGCGACGTGCAACGCGATCTATACCTTAACGTGCTGGCGC
TCCCTGAGTTCCAGCTACTTAAAAGGTTGGAATACTCATGGATATAACCG
CGGAATCGGTCGTACCTACTCTACTATTCAACAAACGTCAGCGGGGGGGA
GGAGTTAGTAATAGTAATCCTTCAGGAACCTATGACCACCTAATGAGTCG
TGCAGGTTTTTGTCTATTAATTGGTCGGTACGGAAACGAACCCGATGTTC
GCCTGGCGTCGTCTTGTATCGTGGCCAGTTTTTCAGCGAGAGTCGCCCCG
GAAATTTCTTGTCATCTAATCTTGCTGTCGAATTTAGGACGATGTGAATA
CGATAAAGATGATGGTGATGATGATGGTGGTGGTGATGGCGGTGGTGAAT
ATGATGGTGGTGATAAAATATGATGGTGAAGATTCATGAGGAGGATGATG
ATGATGATGATGATGATGATGAAAAAATGACTACGTCACAAACAATATAT
ATATATATATATATATATTTGTTTCGTCACCTTGAGGATTTTTTTTACGG
GCATGCCGCGAACACGACGAACGAAGAACAAACAAGCAGCAACAGACAAT
GCCACATGCTTTAATTTGCACCTTGCGGTAAATAATAACAATTAAGAGAA
AAGGAATTGGCATGTCGAACAGGTCGAAAAACACGACGTATTTCGTATAT
ATACACTTATCACCTGTAAATACAGGTATGACCCCTGTATGTGCCACCCC
CTTAGTTTGATCAGTTTGTGGATAATAATTAAATAGTCCAGCTGCTTGAC
GATGCTAAGCATACCCATCTCCAGTTGGTTTCGCCGTTATCGTCATGTTT
CTGATAGTAAGTTATGCATACCTGCTTCTTCTTTTGATTTGCGATGACCC
CCTCCCCTAAGTCTGTTGAGATTGTGGATAAGTAATCCAACACCTTGAAC
AAGCTGGGCTTGCATACGCCCTTTTCGTGGTACGGTCATAGGCATGTTGG
CCACAGTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA
TTATTGATGTTATCATTCACACATTAGCCCAATCCTTTAGACCCATGGGC
AGGTAAATAGGTAAATGGCTATCCGGTGAAGCTGCATTAGTATATCGTAA
CACAATGAGCAATAAAAACGAGTAGAGCCCTAGATAACAGGACTAGACAA
AACCGTAGATAATTTTATCGCTTTGCTTCGTTTTGACTCATGTTGTACGC
TATGGCTTGCTAAGTCGTTGTGCTTCGCACGCGTGATATCGAATCTCACC
GGTCTTACCAATGTGAAAATGAGGATAATTGACCTCGACAGACATTGGTC
GATTGGTACCCTTTTAAAATGTTTCTAAGGTGGTCACACAACGCCCCCCT
ATTGGTCATAAATATAATTTTGCTGATAAGTGTATACAAGTGAACTTTGA
GGTCAACTGCATAGCCTAAAAAAAACACATGAAAACAATGGAGTTATTAT
ATAAGCGTTACCCTTGTTGAGTGATTTTGGCTGATGAGTGCACATAACTG
CCGATTCAAGTCAGTTGCATAACCTCCCTCAAGATGCATTCTCATGACGT
CAGTGGTTCGCATCATATGAAAAATATTTCATGTTCTACCTACAGTACAC
GCGCGAGTGGTACAGCAATACTCTCTTGTGAAGATCGAAGGTTGCCGTAG
TCCATGTCGTGCGTGAGCGTTACCCCCCCCCCCCCCCCCCCCGCTCCTCC
CCGCGTCACATGATACGAACATCAATAGGGCAAAGGAGCCCTGCGACTGT
GGGCGTCGAAACGCTCACCGAGGCCGCTGCTGCTACAAAATCCCCGTCGA
CCGCCGTCCCGACTCCTGCACTGCTGCTCCTCATGCTCTTACTACTACTA
CTGCTGCTTGGTCTTCTTCTCCTGCTGCTGCTACGGCTGCTGCTGTGGTT
TATGGCGGTGGCGCCGGCGGAGACGGAATCGATCCTCGCGCCGTGCTGTA
CCGCAAGTATCATCAACCGGATCTGGAGGAGTGCTCCAAATGCCCGTCCT
GTTTTGGGCTGGCTGCCGTGGCCAAGCTCCAGAAGATAGCTAACCACCCG
TGTTTGCTTCAGGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5002:1294..11357-

>mRNA_H-paniculata_contig5002.12237.1 ID=mRNA_H-paniculata_contig5002.12237.1|Name=mRNA_H-paniculata_contig5002.12237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4668bp|location=Sequence derived from alignment at H-paniculata_contig5002:1294..11357- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCCGAGCTCGGACGGCGGGTGGCCGGAAACCAAGCGGTGCACCCCGCC
GAACCTAAAATTCCGATCCCGATCCCGATCTCGATCCTCTCCGCCCAGCG
AGAAGAGAACCGTTGGCGTCGACAGGAAGGGTAAAGCGTCCACAACGGCG
TTGGCGCGGGCGCCAGGGAACACGAACCGCCGAACATTCCACGCGAATGG
TGTCCATAGCGCGACCGGAGGGAACAGGCACTCGCCGACAGCACCAATGG
GTAACGATGGCGGCGGCGGCGGCAATGGGGATAGAAATACGTCTAGCGGA
AGCTCCAGCGATTCGATGTTCGACATAGACCACCGAGAAACAAACGCAGA
TCGGACAACTACGGAGAGCAGAATAAGCAGAATAAAAACAGGTCTGAAGC
GAGGGCGAACACCACCGGTGAGATCCCCAGGCGATGACCGCAGCTACTAC
AGCAGCGATAATGGCAACAACGACAGTACAGTGGATGGCGTCGACAATGC
GGATGCGGGGGGGGGGGGGAGCATGTTTCGGGGAGGCAAGACCGGGCGCA
ACGAGCGATACCCTGCCCCCGTCCCCCGCCGTCCCCGCTCGTCTTCCTTG
TCGCTCTCCCCCTCGCGTTTCACCGCCTTCGACGGTGATTGCAATAGCGC
CGACGATACGCCATCTGCGGTGGCGTCGTTATCGCCAAAGTCTGCAGCCG
GTGGGAGGAACGGTAACGATAGTTATTTAGCTTCGTCCCGGAGGCGGCGG
CGGAGGAGATCTAGTCGTAGTCGAGAGACTGTTGCTGGACGTCGCGGGGT
CAAACGTGGGCTGGAGGAGGAAAACCTACACGACGGGATCGAGGCCATGC
GCGTCGCGTCGGACGACGAGTTGTCGAGCGTTCGCAGTAACGCCGGTGGC
ATCGGCGGCGTTCGGCGGGGCAAAGAGAGGATGGGAGGAGCCGTGGAGAG
AGGGGATCGGGCGGCGGCGTGGTCGGCGAATTGCGAGGACCAAGAAGAAG
AGCATTCAGAAGATGATGACTACTTGGATGACGAGGATCTCAAGCCCAAC
ATTTCAAACCCGACCTGGCTGGGGCCATTCGAGACGTATGACCTGGGCGC
TGGCGAGTCTATCAACCCTTCCATCAATCGCTACCTGAAAGAGTACCAAC
GAGAAGGGAGGCCGAGCTCGGACGGCGGGTGGCCGGAAACCAAGCGGTGC
ACCCCGCCGAACCTAAAATTCCGATCCCGATCCCGATCTCGATCCTCTCC
GCCCAGCGAGAAGAGAACCGTTGGCGTCGACAGGAAGGGTAAAGCGTCCA
CAACGGCGTTGGCGCGGGCGCCAGGGAACACGAACCGCCGAACATTCCAC
GCGAATGGTGTCCATAGCGCGACCGGAGGGAACAGGCACTCGCCGACAGC
ACCAATGGGTAACGATGGCGGCGGCGGCGGCAATGGGGATAGAAATACGT
CTAGCGGAAGCTCCAGCGATTCGATGTTCGACATAGACCACCGAGAAACA
AACGCAGATCGGACAACTACGGAGAGCAGAATAAGCAGAATAAAAACAGG
TCTGAAGCGAGGGCGAACACCACCGGTGAGATCCCCAGGCGATGACCGCA
GCTACTACAGCAGCGATAATGGCAACAACGACAGTACAGTGGATGGCGTC
GACAATGCGGATGCGGGGGGGGGGGGGAGCATGTTTCGGGGAGGCAAGAC
CGGGCGCAACGAGCGATACCCTGCCCCCGTCCCCCGCCGTCCCCGCTCGT
CTTCCTTGTCGCTCTCCCCCTCGCGTTTCACCGCCTTCGACGGTGATTGC
AATAGCGCCGACGATACGCCATCTGCGGTGGCGTCGTTATCGCCAAAGTC
TGCAGCCGGTGGGAGGAACGGTAACGATAGTTATTTAGCTTCGTCCCGGA
GGCGGCGGCGGAGGAGATCTAGTCGTAGTCGAGAGACTGTTGCTGGACGT
CGCGGGGTCAAACGTGGGCTGGAGGAGGAAAACCTACACGACGGGATCGA
GGCCATGCGCGTCGCGTCGGACGACGAGTTGTCGAGCGTTCGCAGTAACG
CCGGTGGCATCGGCGGCGTTCGGCGGGGCAAAGAGAGGATGGGAGGAGCC
GTGGAGAGAGGGGATCGGGCGGCGGCGTGGTCGGCGAATTGCGAGGACCA
AGAAGAAGAGCATTCAGAAGATGATGACTACTTGGATGACGAGGATCTCA
AGCCCAACATTTCAAACCCGACCTGGCTGGGGCCATTCGAGACGTATGAC
CTGGGCGCTGGCGAGTCTATCAACCCTTCCATCAATCGCTACCTGAAAGA
GTACCAACGAGAAGGGGTCAAGTGGCTATACGGAAAGTTTGCCGAAGGGA
AGGGAGCGGTGCTTGGAGACGACATGGGCCTCGGGAAAACAGTCCAGACC
ATCTCTCTCATTTCGGCTGTTCTGCACAAGACCGGTCAAGTGGCTATACG
GAAAGTTTGCCGAAGGGAAGGGAGCGGTGCTTGGAGACGACATGGGCCTC
GGGAAAACAGTCCAGACCATCTCTCTCATTTCGGCTGTTCTGCACAAGAC
CGGCACGGTGCGAGACAGGGAAAATTTAAGGCGTCGCCGCAAGGAAGGTC
GCCCGGCTAGCGCAAGCGGGATGCCGATGCTCATCGTGGCCCCTAAGGCC
GTGGTGGACGGTTGGATGGAACACCTGGAACAGTGGGGTTTCTTTGAGGC
TGCTAGTCTCACCAAGAGCGAGCAGGCTAACGCACGGTGCGAGACAGGGA
AAATTTAAGGCGTCGCCGCAAGGAAGGTCGCCCGGCTAGCGCAAGCGGGA
TGCCGATGCTCATCGTGGCCCCTAAGGCCGTGGTGGACGGTTGGATGGAA
CACCTGGAACAGTGGGGTTTCTTTGAGGCTGCTAGTCTCACCAAGAGCGA
GCAGGCTAACGGTGTGGTGAAGTCCTTGGTGTCTGGGCGACTGGAGATTC
TGGTGGTGGGCTACACCATGCTAGGTATCGTTATCGACAAGCTGAAGAGT
GTCCCCTTCGACGCCGTCTTTTTCGACGAATATCACACCATCAAGTCGGG
GGCGACGAAGCAGGCGCAGGCGGCGAGCTCACTTGACACGAAGCGCGTGT
ACGGGCTGACGGGCACGCTGATGCAGAATAAGATGGACGAGTTGTGGTTC
CTGATGCACCTGATCGACCCGCATTGTCTGGGAGAGCAGGGTGTGGTGAA
GTCCTTGGTGTCTGGGCGACTGGAGATTCTGGTGGTGGGCTACACCATGC
TAGGTATCGTTATCGACAAGCTGAAGAGTGTCCCCTTCGACGCCGTCTTT
TTCGACGAATATCACACCATCAAGTCGGGGGCGACGAAGCAGGCGCAGGC
GGCGAGCTCACTTGACACGAAGCGCGTGTACGGGCTGACGGGCACGCTGA
TGCAGAATAAGATGGACGAGTTGTGGTTCCTGATGCACCTGATCGACCCG
CATTGTCTGGGAGAGCAGTCGAGGTTCAACGAGCACTTCACGGAGCCGCT
GAAGCGGGACAGAGCCGTGAATGCGTCGGCGGCAGACAGGAGGCTCGCGA
CCAAGCGCCAGGCCGAGCTCAAGAAAATCATCGACAGGCACATGCTCCGC
CGCACCAAGTCGAGGTTCAACGAGCACTTCACGGAGCCGCTGAAGCGGGA
CAGAGCCGTGAATGCGTCGGCGGCAGACAGGAGGCTCGCGACCAAGCGCC
AGGCCGAGCTCAAGAAAATCATCGACAGGCACATGCTCCGCCGCACCAAG
GAGGAGGTGCTGTCAGATGTGCTCAAGGGCAAGTCGGACACGGTGGTGTT
CTGCAACGTGAGCGACGTGCAACGCGATCTATACCTTAACGTGCTGGCGC
TCCCTGAGTTCCAGCTACTTAAAAGGAGGAGGTGCTGTCAGATGTGCTCA
AGGGCAAGTCGGACACGGTGGTGTTCTGCAACGTGAGCGACGTGCAACGC
GATCTATACCTTAACGTGCTGGCGCTCCCTGAGTTCCAGCTACTTAAAAG
GGCAAAGGAGCCCTGCGACTGTGGGCGTCGAAACGCTCACCGAGGCCGCT
GCTGCTACAAAATCCCCGTCGACCGCCGTCCCGACTCCTGCACTGCTGCT
CCTCATGCTCTTACTACTACTACTGCTGCTTGGTCTTCTTCTCCTGCTGC
TGCTACGGCTGCTGCTGTGGTTTATGGCGGTGGCGCCGGCGGAGACGGAA
TCGATCCTCGCGCCGTGCTGTACCGCAAGTATCATCAACCGGATCTGGAG
GAGTGCTCCAAATGCCCGTCCTGTTTTGGGCTGGCTGCCGTGGCCAAGCT
CCAGAAGATAGCTAACCACCCGTGTTTGCTTCAGGGCAAAGGAGCCCTGC
GACTGTGGGCGTCGAAACGCTCACCGAGGCCGCTGCTGCTACAAAATCCC
CGTCGACCGCCGTCCCGACTCCTGCACTGCTGCTCCTCATGCTCTTACTA
CTACTACTGCTGCTTGGTCTTCTTCTCCTGCTGCTGCTACGGCTGCTGCT
GTGGTTTATGGCGGTGGCGCCGGCGGAGACGGAATCGATCCTCGCGCCGT
GCTGTACCGCAAGTATCATCAACCGGATCTGGAGGAGTGCTCCAAATGCC
CGTCCTGTTTTGGGCTGGCTGCCGTGGCCAAGCTCCAGAAGATAGCTAAC
CACCCGTGTTTGCTTCAG
back to top