mRNA_H-paniculata_contig49968.12210.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49968.12210.1
Unique NamemRNA_H-paniculata_contig49968.12210.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig49968.12210.1 vs. uniprot
Match: D7FYB5_ECTSI (Dihydrodipicolinate synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB5_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.750e-13
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 RSMADAVLLMPPYSSFGD--GGL-----ADEEGTEAFLRKALKGCQLPVFLYSLPG 147
            R++ADAVL+MPP SSFG   GG       DE GTEAFLRKAL GCQLPVFLYS  G
Sbjct:  116 RTLADAVLVMPPCSSFGGYPGGRETERGGDERGTEAFLRKALGGCQLPVFLYSAAG 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49968.12210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYB5_ECTSI1.750e-1367.86Dihydrodipicolinate synthetase n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49968contigH-paniculata_contig49968:224..397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size168
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930469.5705478-UTR-H-paniculata_contig49968:223..2291622930469.5705478-UTR-H-paniculata_contig49968:223..229Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49968 224..229 +
1691481305.6787047-UTR-H-paniculata_contig49968:223..2291691481305.6787047-UTR-H-paniculata_contig49968:223..229Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49968 224..229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930469.5861797-CDS-H-paniculata_contig49968:229..3971622930469.5861797-CDS-H-paniculata_contig49968:229..397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49968 230..397 +
1691481305.6899447-CDS-H-paniculata_contig49968:229..3971691481305.6899447-CDS-H-paniculata_contig49968:229..397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49968 230..397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49968.12210.1prot_H-paniculata_contig49968.12210.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49968 230..397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49968.12210.1

>prot_H-paniculata_contig49968.12210.1 ID=prot_H-paniculata_contig49968.12210.1|Name=mRNA_H-paniculata_contig49968.12210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MADAVLLMPPYSSFGDGGLADEEGTEAFLRKALKGCQLPVFLYSLPGERS
EKRACE
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mRNA from alignment at H-paniculata_contig49968:224..397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49968.12210.1 ID=mRNA_H-paniculata_contig49968.12210.1|Name=mRNA_H-paniculata_contig49968.12210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig49968:224..397+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAGTATGGCTGACGCTGTACTTTTGATGCCTCCTTACTCTAGCTTCGG
CGATGGAGGTTTGGCGGATGAAGAGGGTACGGAGGCGTTCTTGCGAAAGG
CGTTGAAGGGCTGCCAATTGCCCGTGTTCCTTTACAGCTTACCGGGTGAG
CGAAGCGAAAAACGCGCGTGCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig49968:224..397+

>mRNA_H-paniculata_contig49968.12210.1 ID=mRNA_H-paniculata_contig49968.12210.1|Name=mRNA_H-paniculata_contig49968.12210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig49968:224..397+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGACGCTGTACTTTTGATGCCTCCTTACTCTAGCTTCGGCGATGG
AGGTTTGGCGGATGAAGAGGGTACGGAGGCGTTCTTGCGAAAGGCGTTGA
AGGGCTGCCAATTGCCCGTGTTCCTTTACAGCTTACCGGGTGAGCGAAGC
GAAAAACGCGCGTGCGAGATGGCTGACGCTGTACTTTTGATGCCTCCTTA
CTCTAGCTTCGGCGATGGAGGTTTGGCGGATGAAGAGGGTACGGAGGCGT
TCTTGCGAAAGGCGTTGAAGGGCTGCCAATTGCCCGTGTTCCTTTACAGC
TTACCGGGTGAGCGAAGCGAAAAACGCGCGTGCGAG
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