mRNA_H-paniculata_contig4982.12189.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4982.12189.1
Unique NamemRNA_H-paniculata_contig4982.12189.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4982.12189.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 9.660e-44
Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 1 
Query:   10 ELSCENVLKWWKKWVSSYPLLARAARVVFGAPASAAVLERDFSDAGRMMTSSRSTTDAKYVEMVLFLHGNVDLIPEDIPKLPTDGPDSAQT 282
            ELSC++VLKWWK+W+SSYPLLARAARVVFGAPASAAVLE DF DAGR+MTSSRSTTDAKYVEM+LFLHGN+DLIPEDIP      P +  T
Sbjct:   31 ELSCDSVLKWWKRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIPACQPTAPSARLT 121
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BLAST of mRNA_H-paniculata_contig4982.12189.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 6.150e-41
Identity = 78/103 (75.73%), Postives = 90/103 (87.38%), Query Frame = 1 
Query:    1 LTAELSCENVLKWWKKWVSSYPLLARAARVVFGAPASAAVLERDFSDAGRMMTSSRSTTDAKYVEMVLFLHGNVDLIPEDIPKLPTDGPDSAQTKVPGRLAHP 309
            L   LSCE+VLKWWK W  +YPLLAR ARVVFGAPASAAVLERDFS+AGRMMTSSRST D+KYVEM++FLHGN+DLIPEDI KL T+   +A+TK+PGRLA+P
Sbjct:  598 LAPGLSCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKL-TEA--AARTKIPGRLANP 697
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BLAST of mRNA_H-paniculata_contig4982.12189.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.070e-38
Identity = 76/103 (73.79%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:    1 LTAELSCENVLKWWKKWVSSYPLLARAARVVFGAPASAAVLERDFSDAGRMMTSSRSTTDAKYVEMVLFLHGNVDLIPEDIPKLPTDGPDSAQTKVPGRLAHP 309
            L A L CE+VLKWWK W  +YPLLAR ARVV GA ASAAVLE DFS+AGRMMTSSRST D+KYVEM+LFLHGN+DLIPEDI KL T+    A+TK+PGRLA+P
Sbjct:  371 LAAGLRCEDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL-TEA--VARTKIPGRLANP 470
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BLAST of mRNA_H-paniculata_contig4982.12189.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 3.020e-38
Identity = 73/103 (70.87%), Postives = 81/103 (78.64%), Query Frame = 1 
Query:    1 LTAELSCENVLKWWKKWVSSYPLLARAARVVFGAPASAAVLERDFSDAGRMMTSSRSTTDAKYVEMVLFLHGNVDLIPEDIPKLPTDGPDSAQTKVPGRLAHP 309
            L  + SCE VL WWK+   SYPLLAR ARVVF APAS  V ERD   AGRMMTSSRST DAKYVEMVLFLHGNVDL+PE IP+LP DG +  QTK+PGRL++P
Sbjct:  640 LFGDTSCEGVLNWWKRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNP 742
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BLAST of mRNA_H-paniculata_contig4982.12189.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 3.970e-38
Identity = 75/103 (72.82%), Postives = 84/103 (81.55%), Query Frame = 1 
Query:    1 LTAELSCENVLKWWKKWVSSYPLLARAARVVFGAPASAAVLERDFSDAGRMMTSSRSTTDAKYVEMVLFLHGNVDLIPEDIPKLPTDGPDSAQTKVPGRLAHP 309
            LT +LSCE VL+WWKKW   YPLLARAARVVFGAPASAAVLERDF+DA  MM SSRS  DAKYVEMVLFLHGN+DLIPE IP+L  +     Q K+PGRL++P
Sbjct:  538 LTDDLSCEGVLEWWKKWGRLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDE---DVQAKIPGRLSNP 637
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BLAST of mRNA_H-paniculata_contig4982.12189.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 6.840e-38
Identity = 72/103 (69.90%), Postives = 82/103 (79.61%), Query Frame = 1 
Query:    1 LTAELSCENVLKWWKKWVSSYPLLARAARVVFGAPASAAVLERDFSDAGRMMTSSRSTTDAKYVEMVLFLHGNVDLIPEDIPKLPTDGPDSAQTKVPGRLAHP 309
            L A L CE+VLKWWK W  +YPLLAR ARVVFGAPASAAVLE  FS+AGRM TSSRST D+ YVEM++FLHGN++LIPEDI KL       A+TK PGRLA+P
Sbjct:  134 LAARLRCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKLTEV---VARTKFPGRLANP 233
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BLAST of mRNA_H-paniculata_contig4982.12189.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.010e-32
Identity = 64/101 (63.37%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:   10 ELSCENVLKWWKKWVSSYPLLARAARVVFGAPASAAVLERDFSDAGRMMTSSRSTTDAKYVEMVLFLHGNVDLIPEDIPKLPTDGPDSAQTK-VPGRLAHP 309
            ELSCE+VLKWWK+W+SSYPLLARA RVVFGAPASAA                       YVEM+LFLHGN+DLIP+DIP LPTDGPDSA  K +PGRL +P
Sbjct:   31 ELSCESVLKWWKRWMSSYPLLARATRVVFGAPASAA-----------------------YVEMILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRLKNP 108
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BLAST of mRNA_H-paniculata_contig4982.12189.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 8.430e-32
Identity = 65/88 (73.86%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:   49 WVSSYPLLARAARVVFGAPASAAVLERDFSDAGRMMTSSRSTTDAK-YVEMVLFLHGNVDLIPEDIPKLPTDGPDSAQTKVPGRLAHP 309
            W   YPLLAR ARVVFGAPASAAVLERDFS+AGRMMTSSR T D+  YVEM+LFLHGN+DLIPEDI KL T+    A++K+PGRLA+P
Sbjct:    2 WAHVYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL-TEA--VARSKIPGRLANP 86
[Close]
BLAST of mRNA_H-paniculata_contig4982.12189.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.040e-26
Identity = 60/85 (70.59%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:   58 SYPLLARAARVVFGAPASAAVLERDFSDAGRMMTSSRSTTDAKY-VEMVLFLHGNVDLIPEDIPKLPTDGPDSAQTKVPGRLAHP 309
            +Y LL   ARVVFGAPASAA LERDFS+AGRMMTSSRS  D+KY VEM+LFLHGN+DLIPEDI  L T+    A+T  PGRLA+P
Sbjct:    5 AYLLLTGVARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTL-TEA--VARTMFPGRLANP 86
[Close]
BLAST of mRNA_H-paniculata_contig4982.12189.1 vs. uniprot
Match: A0A6H5KEK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 8.860e-22
Identity = 54/103 (52.43%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:    1 LTAELSCENVLKWWKKWVSSYPLLARAARVVFGAPASAAVLERDFSDAGRMMTSSRSTTDAKYVEMVLFLHGNVDLIPEDIPKLPTDGPDSAQTKVPGRLAHP 309
            LT +L CE VLKWW+KW  SYPLLARAARV FGAPA+                      DAKYVEMVLFLHG +DL PE IP+L  +       K+PGRL++P
Sbjct:  337 LTDDLGCEGVLKWWEKWEGSYPLLARAARVDFGAPAAG---------------------DAKYVEMVLFLHGKLDLFPEQIPELRDE---DIHAKIPGRLSNP 415
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4982.12189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5L5L6_9PHAE9.660e-4479.12Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE6.150e-4175.73Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE1.070e-3873.79Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LFP4_ECTSI3.020e-3870.87Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI3.970e-3872.82Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JML0_9PHAE6.840e-3869.90Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KGU9_9PHAE1.010e-3263.37Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE8.430e-3273.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KW12_9PHAE5.040e-2670.59Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KEK6_9PHAE8.860e-2252.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4982contigH-paniculata_contig4982:191..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930466.818371-CDS-H-paniculata_contig4982:190..4991622930466.818371-CDS-H-paniculata_contig4982:190..499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4982 191..499 -
1691481304.4242187-CDS-H-paniculata_contig4982:190..4991691481304.4242187-CDS-H-paniculata_contig4982:190..499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4982 191..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4982.12189.1prot_H-paniculata_contig4982.12189.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4982 191..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4982.12189.1

>prot_H-paniculata_contig4982.12189.1 ID=prot_H-paniculata_contig4982.12189.1|Name=mRNA_H-paniculata_contig4982.12189.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
LTAELSCENVLKWWKKWVSSYPLLARAARVVFGAPASAAVLERDFSDAGR
MMTSSRSTTDAKYVEMVLFLHGNVDLIPEDIPKLPTDGPDSAQTKVPGRL
AHP
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mRNA from alignment at H-paniculata_contig4982:191..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4982.12189.1 ID=mRNA_H-paniculata_contig4982.12189.1|Name=mRNA_H-paniculata_contig4982.12189.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at H-paniculata_contig4982:191..499- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGACGGCCGAACTGAGCTGCGAGAACGTGCTCAAGTGGTGGAAGAAATG
GGTTAGCTCCTACCCACTCCTGGCCCGGGCAGCTCGCGTGGTGTTCGGAG
CTCCAGCGTCGGCGGCGGTGCTTGAGCGCGACTTCAGCGACGCTGGTCGA
ATGATGACGTCTTCAAGAAGCACAACCGACGCCAAGTACGTGGAAATGGT
CCTGTTTCTGCACGGCAACGTGGACCTCATTCCGGAGGACATCCCAAAGC
TGCCAACCGACGGCCCCGACAGTGCGCAAACCAAGGTTCCCGGGCGGTTG
GCCCACCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig4982:191..499-

>mRNA_H-paniculata_contig4982.12189.1 ID=mRNA_H-paniculata_contig4982.12189.1|Name=mRNA_H-paniculata_contig4982.12189.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig4982:191..499- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGACGGCCGAACTGAGCTGCGAGAACGTGCTCAAGTGGTGGAAGAAATG
GGTTAGCTCCTACCCACTCCTGGCCCGGGCAGCTCGCGTGGTGTTCGGAG
CTCCAGCGTCGGCGGCGGTGCTTGAGCGCGACTTCAGCGACGCTGGTCGA
ATGATGACGTCTTCAAGAAGCACAACCGACGCCAAGTACGTGGAAATGGT
CCTGTTTCTGCACGGCAACGTGGACCTCATTCCGGAGGACATCCCAAAGC
TGCCAACCGACGGCCCCGACAGTGCGCAAACCAAGGTTCCCGGGCGGTTG
GCCCACCCCCTGACGGCCGAACTGAGCTGCGAGAACGTGCTCAAGTGGTG
GAAGAAATGGGTTAGCTCCTACCCACTCCTGGCCCGGGCAGCTCGCGTGG
TGTTCGGAGCTCCAGCGTCGGCGGCGGTGCTTGAGCGCGACTTCAGCGAC
GCTGGTCGAATGATGACGTCTTCAAGAAGCACAACCGACGCCAAGTACGT
GGAAATGGTCCTGTTTCTGCACGGCAACGTGGACCTCATTCCGGAGGACA
TCCCAAAGCTGCCAACCGACGGCCCCGACAGTGCGCAAACCAAGGTTCCC
GGGCGGTTGGCCCACCCC
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