mRNA_H-paniculata_contig4980.12184.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4980.12184.1
Unique NamemRNA_H-paniculata_contig4980.12184.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4980.12184.1 vs. uniprot
Match: D8LEV4_ECTSI (C2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV4_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 3.400e-19
Identity = 91/308 (29.55%), Postives = 124/308 (40.26%), Query Frame = 1 
Query:   64 DLRKHGHFGQLNVYCAIKLGEHEVGRTRDIKFDQHLVWERPEERFRLPLDDICGAPAA------LGTSTASPSKTAQSGHHGHGQKHRRPSASELTSNH-------IINAGKDESRVRTVSLGDEAIKGACV--------------HPPH--------VAPLTIEVWGKHVI--GRRHDFLGRATVPAENVQHPHGDVWLPLRGRLSPDPVAEGAYRDLNGALVAGSGSPVSVVRETRDRSWGGGLFKTLRLLPAKTASVENETFGNLPPTGSVHVWLGKVHRSSSGGREPGRGRVVLRVHAAANLRK 876
            DL  H  FG    +C +++G+ EV RTR +K +  LVWE PEERFR+ ++DI GA  A      + T+ A+ + T             R   S  T+ H          AG D       +LG +   GA V                PH         + LTI VW K  +  GRR   +G ATVP   + HP GD W+PL         A G  R+ +G     +   V       D +  G   K     PA              P G          R S+ G++PG G  +LR+H+A+ LRK
Sbjct: 4484 DLLAH-KFGDSKYFCVLEVGQREVDRTRQVKRNPELVWEAPEERFRVAIEDIKGAKPAPNSVGFVNTTNATGAATPAG---------ERDPPSLATARHGEQVTRLFAEAGGDGEGAGDATLGADLDGGAPVSVLSIPASALRRHSQQPHHGQEVAAGASSLTISVWSKGTVMGGRRDVLVGTATVPTRYIDHPPGDAWIPL--------AAGGDSRE-DGQAGGKAEHKVGXXXXXXDAAAVGTESKNPDATPA--------------PAGGTTT----ARRGSTSGQQPGEGYAILRIHSASGLRK 4754
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4980.12184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEV4_ECTSI3.400e-1929.55C2 domain containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4980contigH-paniculata_contig4980:1561..4103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog2880.D8LEV4
KEGG koko:K12486
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG1030@1,KOG1030@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons5
Model size1169
Cds size1002
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4980.12184.1prot_H-paniculata_contig4980.12184.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4980 1727..4103 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930466.2979567-UTR-H-paniculata_contig4980:1560..17261622930466.2979567-UTR-H-paniculata_contig4980:1560..1726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4980 1561..1726 -
1691481304.1794848-UTR-H-paniculata_contig4980:1560..17261691481304.1794848-UTR-H-paniculata_contig4980:1560..1726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4980 1561..1726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930466.3699138-CDS-H-paniculata_contig4980:1726..18071622930466.3699138-CDS-H-paniculata_contig4980:1726..1807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 1727..1807 -
1691481304.1935062-CDS-H-paniculata_contig4980:1726..18071691481304.1935062-CDS-H-paniculata_contig4980:1726..1807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 1727..1807 -
1622930466.4005737-CDS-H-paniculata_contig4980:1825..18701622930466.4005737-CDS-H-paniculata_contig4980:1825..1870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 1826..1870 -
1691481304.2039244-CDS-H-paniculata_contig4980:1825..18701691481304.2039244-CDS-H-paniculata_contig4980:1825..1870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 1826..1870 -
1622930466.420674-CDS-H-paniculata_contig4980:2661..29331622930466.420674-CDS-H-paniculata_contig4980:2661..2933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 2662..2933 -
1691481304.2213418-CDS-H-paniculata_contig4980:2661..29331691481304.2213418-CDS-H-paniculata_contig4980:2661..2933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 2662..2933 -
1622930466.4362738-CDS-H-paniculata_contig4980:2948..34771622930466.4362738-CDS-H-paniculata_contig4980:2948..3477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 2949..3477 -
1691481304.237695-CDS-H-paniculata_contig4980:2948..34771691481304.237695-CDS-H-paniculata_contig4980:2948..3477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 2949..3477 -
1622930466.4551628-CDS-H-paniculata_contig4980:4028..41031622930466.4551628-CDS-H-paniculata_contig4980:4028..4103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 4029..4103 -
1691481304.2482522-CDS-H-paniculata_contig4980:4028..41031691481304.2482522-CDS-H-paniculata_contig4980:4028..4103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 4029..4103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4980.12184.1

>prot_H-paniculata_contig4980.12184.1 ID=prot_H-paniculata_contig4980.12184.1|Name=mRNA_H-paniculata_contig4980.12184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=334bp
GQAASRIHEPEDLLISLRGVVDLRKHGHFGQLNVYCAIKLGEHEVGRTRD
IKFDQHLVWERPEERFRLPLDDICGAPAALGTSTASPSKTAQSGHHGHGQ
KHRRPSASELTSNHIINAGKDESRVRTVSLGDEAIKGACVHPPHVAPLTI
EVWGKHVIGRRHDFLGRATVPAENVQHPHGDVWLPLRGRLSPDPVAEGAY
RDLNGALVAGSGSPVSVVRETRDRSWGGGLFKTLRLLPAKTASVENETFG
NLPPTGSVHVWLGKVHRSSSGGREPGRGRVVLRVHAAANLRKRFPRAHQC
SYGYPSPARGSNIPTPCPYGWPRGRRDCHKRVR*
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mRNA from alignment at H-paniculata_contig4980:1561..4103-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4980.12184.1 ID=mRNA_H-paniculata_contig4980.12184.1|Name=mRNA_H-paniculata_contig4980.12184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2543bp|location=Sequence derived from alignment at H-paniculata_contig4980:1561..4103- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACAAGCAGCATCGAGGATACATGAACCCGAGGATCTGCTGATTTCTTT
GCGCGGTGTAGTTGATCTCAGGAAGGTGAGCGTTTTGATTGCAATACGTT
GTCCTGGTTCGGCTGCTCGACGCGCGGAAAGCGCTGGAGCACACCATATA
TGCGATTCCCTATAAAGCCTTATGTCCCAAAGTCAAGCATAGACACGATA
TTGACGAGCAGATATTCAATAGATGAAAGAAACGAGTGGAGCTCATATGT
TACTTGCAATCACATGCAAGGCAGTTTAAAAGATTGGAGTGAGCCATCGC
CGTCGCAAACTAACTGAAGGCTGAAGGCTCACTCCGGAATAGAGCAACTT
TCACAGACCACTTTTTGAGAGTTCAAACTGATTGCTGGTCAATCTCCAAC
TGAGGAGTACAGTGAAATACAAACATGTTTAATCGACCTCAAGGAGTGCG
CACTGTTGGCGACCAGAGGCTGTATGATCGGATACTATATTCTCATACTG
TGCCCGATCATGTAGCGCTAACTTTGATACGAAAACTTCTGTACAGCGTA
CGGTTGATAGCATTATTGGAGTAGATACAAATAACAAACTAAGTGTTTCC
CCTGTCTTCCCTTTCCCGGTCACTAGCATGGACACTTCGGGCAGTTGAAT
GTATATTGTGCAATCAAGTTGGGAGAACACGAGGTAGGCAGGACCCGCGA
CATCAAGTTCGACCAGCACCTCGTTTGGGAACGCCCAGAAGAACGCTTCC
GCCTACCATTAGACGATATTTGCGGCGCACCAGCAGCTCTTGGCACGTCG
ACGGCGAGTCCCTCCAAGACTGCGCAAAGCGGCCACCACGGGCACGGGCA
GAAGCATCGAAGACCCTCCGCCTCAGAACTAACGTCCAATCATATAATCA
ACGCTGGGAAAGACGAGTCACGGGTTCGAACTGTGTCTTTGGGTGACGAG
GCTATCAAAGGTGCCTGCGTTCATCCTCCTCATGTTGCGCCTCTCACGAT
CGAGGTGTGGGGCAAACATGTCATCGGTCGGCGCCACGATTTCCTGGGCA
GAGCCACCGTTCCTGCCGAGAATGTTCAACACCCGCACGGTGATGTTTGG
CTACCCCTCAGAGGGAGGCTATCTCCAGATCCTGTGGCTGAAGGAGCTTA
TCGGGGTGAGGAGGGAAAAGATTTGAACGGTGCGCTCGTAGCCGGTTCTG
GATCACCGGTAAGCGTAGTCAGAGAAACAAGAGATAGATCGTGGGGAGGG
GGGCTCTTCAAGACTCTGCGTTTACTGCCAGCAAAGACTGCGAGCGTGGA
GAACGAAACATTCGGGAATCTACCTCCAACTGGCTCGGTCCATGTTTGGC
TAGGAAAGGTTCACAGAAGTAGTTCCGGCGGTCGCGAGCCTGGGAGGGGG
CGGGTTGTCCTGCGTGTGCACGCTGCGGCGAATTTGCGTAAGGTAAGGTA
TTCGCCAGTATAATTGTCGATCTGATTTGAGCTAACATGGTGTTATGTTG
ACTCTGCACGATAACAGGACTTGCCAGTAGCAAACTGTATTCGATGCACC
ACACTGCCTCCATTGACCCTAACTAAACTCTCGGGTTTCCCGTTGTTATT
TATTGCTGTTGGTGGAAAATTGTCTCGGTCGACAACGTAGGCCGATCGGC
TAGGCAAGTCCGATCCCAAGTGCTTTGTCACGTGGAATGGTGATGAGGCT
GGTTCGACGTCGACACGATATAACACGTTTGACCCTCGATGGGATCCCCA
GACAGAATCGTTTGAGTTGCGTCTACTACAGGATCGTAGTCTTTCCGAGC
TACATGTCGATGTGTGGGACATGGACAATGCCGGAATGACGCGAGGGTAA
GAGCGAGCGAACATATTCATTGACAGGTAGCTGCCAAAACGAGCGTTGCC
GTCGAGTAAGGTTTGGTTCGGAAAAATGACGATGTCGACCGCGAGCATTG
AGTCTCGTGTGTTTCATGCCAGCCGCAATGTTGCGCAGAATCAACAGAGG
CAGCCCATGTAAAAACATTTTCAAAACGAAAAATGGTGGACATCGACCAC
TGAATCGGTAGTGAAACATATGCTGGGTCGTATAAAGAAAAAATAGATCT
CCATAAGACTCTACTCAGCTGAATTTTGTCCAGCAGACCAACTGCCCTGA
TAGCGAATCAGAATATGCTGCCAACCTGAACGTCAAGCATAATCGGGATA
CGCGTCTCATTTCCTTCCCAACGATACCCACAGAGATTTCCTAGGGCGCA
TCAATGTTCCTACGGCTATCCTTCTCCATCCACCATCAACCGAAGGGCTA
GAGGCTCAAATATCCCTACCCCTTGTCCCTATGGATGGCCCAGAGGCCGG
AGAGACTGCCACAAGCGCGTTCGATGATGACCGTGAAGTCAACGGCAGTA
GCGACGGCGCCCTAATGAGTGATGAGGTAGGCAAAATCTGGGCCCGAAGT
ACTTCGAATGTCACCGAACCCCCGTCTTCTGCAAAACATCTAGTCGAACA
CACTAGTGGAGCAGCGGGTCGGTTTGCCAGTCGTTTGATGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig4980:1561..4103-

>mRNA_H-paniculata_contig4980.12184.1 ID=mRNA_H-paniculata_contig4980.12184.1|Name=mRNA_H-paniculata_contig4980.12184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2004bp|location=Sequence derived from alignment at H-paniculata_contig4980:1561..4103- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACAAGCAGCATCGAGGATACATGAACCCGAGGATCTGCTGATTTCTTT
GCGCGGTGTAGTTGATCTCAGGAAGGGACAAGCAGCATCGAGGATACATG
AACCCGAGGATCTGCTGATTTCTTTGCGCGGTGTAGTTGATCTCAGGAAG
CATGGACACTTCGGGCAGTTGAATGTATATTGTGCAATCAAGTTGGGAGA
ACACGAGGTAGGCAGGACCCGCGACATCAAGTTCGACCAGCACCTCGTTT
GGGAACGCCCAGAAGAACGCTTCCGCCTACCATTAGACGATATTTGCGGC
GCACCAGCAGCTCTTGGCACGTCGACGGCGAGTCCCTCCAAGACTGCGCA
AAGCGGCCACCACGGGCACGGGCAGAAGCATCGAAGACCCTCCGCCTCAG
AACTAACGTCCAATCATATAATCAACGCTGGGAAAGACGAGTCACGGGTT
CGAACTGTGTCTTTGGGTGACGAGGCTATCAAAGGTGCCTGCGTTCATCC
TCCTCATGTTGCGCCTCTCACGATCGAGGTGTGGGGCAAACATGTCATCG
GTCGGCGCCACGATTTCCTGGGCAGAGCCACCGTTCCTGCCGAGAATGTT
CAACACCCGCACGGTGATGTTTGGCTACCCCTCAGAGGGAGGCTATCTCC
AGATCCTGTGGCTGAAGGAGCTTATCGGGCATGGACACTTCGGGCAGTTG
AATGTATATTGTGCAATCAAGTTGGGAGAACACGAGGTAGGCAGGACCCG
CGACATCAAGTTCGACCAGCACCTCGTTTGGGAACGCCCAGAAGAACGCT
TCCGCCTACCATTAGACGATATTTGCGGCGCACCAGCAGCTCTTGGCACG
TCGACGGCGAGTCCCTCCAAGACTGCGCAAAGCGGCCACCACGGGCACGG
GCAGAAGCATCGAAGACCCTCCGCCTCAGAACTAACGTCCAATCATATAA
TCAACGCTGGGAAAGACGAGTCACGGGTTCGAACTGTGTCTTTGGGTGAC
GAGGCTATCAAAGGTGCCTGCGTTCATCCTCCTCATGTTGCGCCTCTCAC
GATCGAGGTGTGGGGCAAACATGTCATCGGTCGGCGCCACGATTTCCTGG
GCAGAGCCACCGTTCCTGCCGAGAATGTTCAACACCCGCACGGTGATGTT
TGGCTACCCCTCAGAGGGAGGCTATCTCCAGATCCTGTGGCTGAAGGAGC
TTATCGGGATTTGAACGGTGCGCTCGTAGCCGGTTCTGGATCACCGGTAA
GCGTAGTCAGAGAAACAAGAGATAGATCGTGGGGAGGGGGGCTCTTCAAG
ACTCTGCGTTTACTGCCAGCAAAGACTGCGAGCGTGGAGAACGAAACATT
CGGGAATCTACCTCCAACTGGCTCGGTCCATGTTTGGCTAGGAAAGGTTC
ACAGAAGTAGTTCCGGCGGTCGCGAGCCTGGGAGGGGGCGGGTTGTCCTG
CGTGTGCACGCTGCGGCGAATTTGCGTAAGATTTGAACGGTGCGCTCGTA
GCCGGTTCTGGATCACCGGTAAGCGTAGTCAGAGAAACAAGAGATAGATC
GTGGGGAGGGGGGCTCTTCAAGACTCTGCGTTTACTGCCAGCAAAGACTG
CGAGCGTGGAGAACGAAACATTCGGGAATCTACCTCCAACTGGCTCGGTC
CATGTTTGGCTAGGAAAGGTTCACAGAAGTAGTTCCGGCGGTCGCGAGCC
TGGGAGGGGGCGGGTTGTCCTGCGTGTGCACGCTGCGGCGAATTTGCGTA
AGAGATTTCCTAGGGCGCATCAATGTTCCTACGGCTATCCTTCTCCAAGA
TTTCCTAGGGCGCATCAATGTTCCTACGGCTATCCTTCTCCAGCTAGAGG
CTCAAATATCCCTACCCCTTGTCCCTATGGATGGCCCAGAGGCCGGAGAG
ACTGCCACAAGCGCGTTCGATGAGCTAGAGGCTCAAATATCCCTACCCCT
TGTCCCTATGGATGGCCCAGAGGCCGGAGAGACTGCCACAAGCGCGTTCG
ATGA
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