mRNA_H-paniculata_contig4963.12156.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4963.12156.1
Unique NamemRNA_H-paniculata_contig4963.12156.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4963.12156.1 vs. uniprot
Match: D8LCH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH2_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 4.630e-51
Identity = 97/150 (64.67%), Postives = 114/150 (76.00%), Query Frame = 2 
Query:   41 MDGRGIQLPLVEPLLRVPLSVIVDVVSNRSEAAVLLRLGDLASEFDLLMRFLAQWLEHQQHLRIDCQLAEETQDLTLS------AIAPLMCQARAANRHGMRVLQQRITDCLQNLQRYMDAVQVFANQNASFAQELRLCGLGARADQRQR 472
            M+ R ++LP  EPLL VP+S IV+ VSNRSEA VLLR+GDL  EFD L R L QWLEH+QHL  D  L EE Q +  S      ++ PL  QAR  NRHG+RVLQ++IT+CLQ LQRYMDAVQVFANQNASF+QELRLCGLG RA+QR+R
Sbjct:    1 MENRALRLPRAEPLLHVPVSAIVEFVSNRSEAEVLLRIGDLGHEFDHLTRTLVQWLEHEQHLTADGCLQEEQQPVEDSGESLVLSLVPLAHQARVVNRHGVRVLQEKITECLQQLQRYMDAVQVFANQNASFSQELRLCGLGDRAEQRRR 150
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BLAST of mRNA_H-paniculata_contig4963.12156.1 vs. uniprot
Match: A0A6H5JFN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN0_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 2.370e-46
Identity = 97/165 (58.79%), Postives = 117/165 (70.91%), Query Frame = 2 
Query:   38 SMDGRGIQLPLVEPLLRVPLSVIVDVVSNRSEAAVLLRLGDLASEFDLLMRFLAQWLEHQQHLRID-C-----QLAEETQDLTLSAIAPLMCQARAANRHGMRVLQQRITDCLQNLQRYM--------------DAVQVFANQNASFAQELRLCGLGARADQRQR 472
            +M+ R ++LP  EPLL VP+S IV+ VSNRSEA VLLR+GDL  EFD L R L QWLEH+QHL  D C     Q AE+T +  + ++ PL  QAR  NRHG+RVLQQ+IT+CLQ LQRYM              DAVQVFA+QNASF+QELRLCGLG RA+QR+R
Sbjct:   20 NMEDRALRLPRAEPLLHVPVSAIVEFVSNRSEAEVLLRIGDLGHEFDHLTRTLVQWLEHEQHLTADGCLQEEQQPAEDTGESLVLSLVPLAHQARVVNRHGVRVLQQKITECLQQLQRYMVGVVQGDGFGKWTMDAVQVFADQNASFSQELRLCGLGDRAEQRRR 184
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BLAST of mRNA_H-paniculata_contig4963.12156.1 vs. uniprot
Match: A0A485LGU4_9STRA (Aste57867_20933 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGU4_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 5.710e-5
Identity = 39/127 (30.71%), Postives = 67/127 (52.76%), Query Frame = 2 
Query:   59 QLPLVEPLLRVPLSVIVDVVSNRSEAAVLLRLGDLASEFDLLMRFLAQWLEHQQHLRIDCQLAEET-QDLTLSAI---APLMCQARAANRHGMRVLQQRITDCLQNLQRYMDAVQVFANQNASFAQE 427
            +LP +E +L VP+  ++  V   SEA V+L+LGDL ++ DLL   + +  +   + R    L E   Q LT S     +     A+A  +  + +L  R+ D L+ ++ ++  +++FA  NA  AQE
Sbjct:   36 KLPTIETMLSVPVEFLLRNVHVPSEACVMLQLGDLGADLDLLFEHIRE--QTSDYFRCHDILKETVRQSLTNSLYITESVTRNTAKAGIKANLVLLNDRVHDVLRQMESHLHTLRLFAEMNAILAQE 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4963.12156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCH2_ECTSI4.630e-5164.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFN0_9PHAE2.370e-4658.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A485LGU4_9STRA5.710e-530.71Aste57867_20933 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4963contigH-paniculata_contig4963:3875..7850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size475
Cds size474
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4963.12156.1prot_H-paniculata_contig4963.12156.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4963 3876..7850 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930462.1769285-CDS-H-paniculata_contig4963:3875..39701622930462.1769285-CDS-H-paniculata_contig4963:3875..3970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4963 3876..3970 -
1691481302.50201-CDS-H-paniculata_contig4963:3875..39701691481302.50201-CDS-H-paniculata_contig4963:3875..3970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4963 3876..3970 -
1622930462.1964104-CDS-H-paniculata_contig4963:4282..43681622930462.1964104-CDS-H-paniculata_contig4963:4282..4368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4963 4283..4368 -
1691481302.512087-CDS-H-paniculata_contig4963:4282..43681691481302.512087-CDS-H-paniculata_contig4963:4282..4368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4963 4283..4368 -
1622930462.212129-CDS-H-paniculata_contig4963:5507..55801622930462.212129-CDS-H-paniculata_contig4963:5507..5580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4963 5508..5580 -
1691481302.5217254-CDS-H-paniculata_contig4963:5507..55801691481302.5217254-CDS-H-paniculata_contig4963:5507..5580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4963 5508..5580 -
1622930462.228414-CDS-H-paniculata_contig4963:5968..60551622930462.228414-CDS-H-paniculata_contig4963:5968..6055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4963 5969..6055 -
1691481302.530373-CDS-H-paniculata_contig4963:5968..60551691481302.530373-CDS-H-paniculata_contig4963:5968..6055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4963 5969..6055 -
1622930462.2417223-CDS-H-paniculata_contig4963:7717..78501622930462.2417223-CDS-H-paniculata_contig4963:7717..7850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4963 7718..7850 -
1691481302.5395455-CDS-H-paniculata_contig4963:7717..78501691481302.5395455-CDS-H-paniculata_contig4963:7717..7850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4963 7718..7850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4963.12156.1

>prot_H-paniculata_contig4963.12156.1 ID=prot_H-paniculata_contig4963.12156.1|Name=mRNA_H-paniculata_contig4963.12156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
PTQCKVRLGAGEQHGRKRHTTTSGGALAPCTLVGYCGCRIQQERGGRATA
PRGSGIGVRPPHEVSRAVAGAPAAPADRLPAGGGDPGLDLVGYRASDVPG
ACGEQTRHESPPAEDHRLPSEPPEVHGCRTGFCKPKRFIRTRTPPLWARS
TRGPASAI
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mRNA from alignment at H-paniculata_contig4963:3875..7850-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4963.12156.1 ID=mRNA_H-paniculata_contig4963.12156.1|Name=mRNA_H-paniculata_contig4963.12156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3976bp|location=Sequence derived from alignment at H-paniculata_contig4963:3875..7850- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCACACAATGCAAGGTACGGCTGGGTGCCGGAGAACAGCATGGACGGAA
GAGGCATACAACTACCTCTGGTGGAGCCCTTGCTCCGTGTACCCTTGTCG
GTTATTGTGGATGTCGTATCCAACAGGAGCGAGGTAAGAGACATCTAGCA
TAGCGAGCACTCAGCTGGAAAACGTTGAACGTTTGAAATTTCACTCTCTT
ACTACCCGTGGTTGGATCTCTAGCTCTACTGTAATAACACGACATATACC
GTCATATCTCGACAACTACAACTTGCGCCTCACACACGGTAACCTCGCTT
CAGACCGAGCCGTCATAGCAGCAGCAGTAGCAGCAGTAATAACGACAGCA
GCAACGATAACGACAATAACAACAACAGCAGTAGAAGCAAATAGTTTCCA
CCAACGAGGATAGCTTTGCTCGTCAAGGTGCATGTGATGTGTCGACCCCA
ACTACATAGAGATATGCTCCCAAACTCCACTATTAATAATTCGCAATATT
ATTATCAACTTTGTAGTACTACAGTACACAAGGCCTGAAAAATCCATGAA
AGATGTGATACTATAGTGTAACTACTTTCTTGATTTCTGATTTCAAATTT
CCGGTCAATATATATACTCCCTCTGTCTCAAATGTCTGTCTGGTTTGGTG
CCATGAGGCATAACTTTCTACCCTTGGTACACCACAAACTATATATCGTT
CGAAAGCCCTTGATTTCCGCTATCTCCTGGATGTTTTCAAAATACAATTC
CGATTTGTTGGCATTCCGAAAGTCCAAGGTGAAAAAAAAAAAGGGCCCTA
TTTTTTTTGTCAGAAATTTGTAAAAGACCCGGGACTTTTTTTTTCGGTGT
ATTTTTTTAGTTGTAGCCCCCCTACACCACACACAGCACCATGGCAGCCC
TCCCAGTCCACCGCTGAGCCCTGCCAGTCCGACGGTGAACCTTAGGGGGG
CGGCGCCTAGTCCTCCAAGCCCATCATTACACCCTGGAAGCCCATCCCGT
CGTATCAAACACGGAGAGCTCCTTCCAGGATCTCGTTACGGATTGGCATT
ACGGTGTGCAATGGCGTTGCCACCCGGGCAGACCAAGATGCTCTATGGCA
CATACAAAGCGCTCGCGGATAAGTACGAGAACTAGCAGGGCTCAGCGGTG
GACTGGGAGGGCTTGTCATGGTGCTGTGTGTGGTGTAGGGGGGCTGCAAC
TGAAAAAATACACCGAAAAAAAAAGTCCCAGGTCTTTTACAAATTTCTGA
CAAAAAAATAGGGCCTTTTTTTTTTTTTCACCTTGGACTTTCGGAATACT
AACAAATCGGAATTGTATTTTGAAAACATCCAGGAGATGGCGGAAATCAA
GGGCTTTCGGATGATATATAGTTTGTGGTGTATAACCCGAGGTGTAGAAA
GTTATGCCTCATGGCGCCAAACCGGACAGACATATAAGACAGGGAGACTA
TAGATATAATTGAAGAAATCAAAATTACACCATTCGGTTCACGTCTGATA
ATATATATAGAGAGCTCTATATATATTGTTCACAATAAAAATGAGTCGAT
TTTAAAAAGGTCGCACAAAAACAAGGAAGTGACCATTGTTGGCAAAAATA
AATACAAGCACCAACTTGGGCACTGGTAGCTCGGGTGCTACGGATGGTAA
TAATGCCCTATTACGGTCGAAAACCGGACTGCCTACTACCAAATTTACCC
AGTCAAGCCTCTCTTGTGTTGGGCGTTTCTCCTCAGTCGTGTCCACCTGG
GCAATACATCGCTGCCCTCCCTGCTCTTTTCGATGATGACCTCAGGCGGC
CGTGCTACTGCGCCTAGGGGATCTGGCATCGGAGTTCGACCTCCTCATGA
GGTTTCTCGCGCAGTGGCTGGAGCACCAGCAGGTGCGATCAAACTAGGCT
GTGCGTTGCACACTCGAATCAGATGTGAACGTTTTCCTTTTTGTTCAATA
ACCATGTGTTGTGTTCCGAGCGTTGTCGATGCATCAACTGTCTAGCGTGT
CGGTTTTTTACCTACGGTGGGCTGTGCGAGTTTAGTGGGTCTGTTTTCCT
TATGATTGGAAGTTGATTTTGCGCTTTTGTGCCTCATCCCTGCTCGATTC
TCCAACGCCCGGCAATGAATCCTGTATCCTAAGATGATATACATGTTTTC
TCGCATATATGAAGCTAGTGTAGAGGCATGTGTTTTCATTCCCCAGAAAA
AAAAAAAAAACACCCTTCAGCCTGAGTCAATGGTGTATTGCTCTATCGTT
TATTTCATGTGGTGCTGCAGCACCTGCGGATCGACTGCCAGCTGGCGGAG
GAGACCCAGGACTTGACCTTGTCGGCTATCGCGCCTCTGATGTGTGAGTT
TGACAAAGAACAAGATTGGTGTTGCTATCGCATCGTTGGGGGTGGCAATA
TAATTAGCCAAACTATATAGTAAAAAGCAGCTGTATTCAGGGGGCGAAGA
GCATAGGGTTGTGGAGGCGAGGCGTGCGTTCATCCAGCGATGAAGCTCGA
TTTTTTGGGGGCCGTGTATGGTGTGTTTAAAACGACGTAGTGATGCATCG
GTGCGAAACGAAGAAAGTTCGCCAGGCGAAGTGTACTCGCCAGCGCTTCA
GCGCGAGCCAACACGGCTGTCCCCGGCTTGTCCAGGGGCCTCGCCCGAGA
CGCCACCGAAGGCTGAAGAAATATGCGTACTCTGTTTGCTAGGTGTTTAA
TGATGATCATGTTGCCTGGATTCTGACTACCATGGGGCAAAACACCAATG
TGTCATTTTGATCGCCGATCGATGTACTTGTTCAAACATATACATATATT
CGTATTGCCGATATGCGATATATCCTTCTTTTGTGTATCGGCGTCAATAC
ACAGCTGTATGAATTTCTGCTTTTGTAGTGAGCCCATGATACCTTGTTGT
GTGCCATAAGCACGTAGTTGGCATGGTGCAAACCGTCGATTTGTCCGTCC
GTATCCTAGGGCGTACACTGGCCAGGAGTTGGAAGATGGTTGTTTGAGGC
CAAGACTCCCAGACAGTCTTGTTAATAACACAAGCGAATCTGGTTGCCCT
GGGTGCTGAGACTACCAAGTGGGTTTTTGCAAGGTTAGAGGCCTGGGCTG
CCTGTGATGATGGTGAACCTGAGTGGTGCTCCCCGAAGGGATTAGCATAA
AGGGATACACTGAAGTAACGTGTGAACATTCTCGCGAATACAAAGTGATC
GAAAGGGCGTTGTACCCTCTCATCTGAGTAGAACAACAACAGCACGCAGG
GTAGTAAGTTCACCTGCCCATGCCGGCTCTGCCCACACGATATCACGGGA
ATACAATCGCTGTACCAAGCAGTGGTAATTTACGTTTTATAGATTGAGAC
TATATGACTAAGCTTTTAGTTCTCTAGCGCCTCTCGGGCGGGCGGGCGGG
CGGGGCGCGCGCGCGCGCGTGTGTGTGGGGGGGGTCATGCTATTCGCCGT
TTTGATTGGTCGATCTCTTGGGGGCAATGCAGGCCAGGCGCGTGCGGCGA
ACAGACACGGCATGAGAGTCCTCCAGCAGAGGATCACCGATTGCCTTCAG
AACCTCCAGAGGTACATGGTGAGTAGTCAGTTTCTCTGCAACAAGTACGG
ACAGCAGGGAGGGCGGTCCTGGATTATGCCGCGTAGCGAACCCAATTATC
TTCTCTTCACACGTGATGCATATGCACAGTATTGCATGCCGTTGCACGCG
CGATACACACATGAGGGTGTTTCATTTTGCACAAAGCCTCGTCCGTTGCG
CATTGTTAACATCTTCCCCCCCCCCCCCTCCCCGTGTATCGCCGGGTTTT
ATGTGGCGACGTACCTTTTCTAGGTACTCCCTCGCCTAAACATGAATGCA
TAATTCTCTCTTGTTGTATGCTGCACCCAGGATGCCGTACAGGTTTTTGC
AAACCAAAACGCTTCATTCGCACAAGAACTCCGCCTTTGTGGGCTAGGAG
CACGCGCGGACCAGCGTCAGCGATTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4963:3875..7850-

>mRNA_H-paniculata_contig4963.12156.1 ID=mRNA_H-paniculata_contig4963.12156.1|Name=mRNA_H-paniculata_contig4963.12156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig4963:3875..7850- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCACACAATGCAAGGTACGGCTGGGTGCCGGAGAACAGCATGGACGGAA
GAGGCATACAACTACCTCTGGTGGAGCCCTTGCTCCGTGTACCCTTGTCG
GTTATTGTGGATGTCGTATCCAACAGGAGCGAGCCCACACAATGCAAGGT
ACGGCTGGGTGCCGGAGAACAGCATGGACGGAAGAGGCATACAACTACCT
CTGGTGGAGCCCTTGCTCCGTGTACCCTTGTCGGTTATTGTGGATGTCGT
ATCCAACAGGAGCGAGGCGGCCGTGCTACTGCGCCTAGGGGATCTGGCAT
CGGAGTTCGACCTCCTCATGAGGTTTCTCGCGCAGTGGCTGGAGCACCAG
CAGGCGGCCGTGCTACTGCGCCTAGGGGATCTGGCATCGGAGTTCGACCT
CCTCATGAGGTTTCTCGCGCAGTGGCTGGAGCACCAGCAGCACCTGCGGA
TCGACTGCCAGCTGGCGGAGGAGACCCAGGACTTGACCTTGTCGGCTATC
GCGCCTCTGATGTCACCTGCGGATCGACTGCCAGCTGGCGGAGGAGACCC
AGGACTTGACCTTGTCGGCTATCGCGCCTCTGATGTGCCAGGCGCGTGCG
GCGAACAGACACGGCATGAGAGTCCTCCAGCAGAGGATCACCGATTGCCT
TCAGAACCTCCAGAGGTACATGGCCAGGCGCGTGCGGCGAACAGACACGG
CATGAGAGTCCTCCAGCAGAGGATCACCGATTGCCTTCAGAACCTCCAGA
GGTACATGGATGCCGTACAGGTTTTTGCAAACCAAAACGCTTCATTCGCA
CAAGAACTCCGCCTTTGTGGGCTAGGAGCACGCGCGGACCAGCGTCAGCG
ATTGATGCCGTACAGGTTTTTGCAAACCAAAACGCTTCATTCGCACAAGA
ACTCCGCCTTTGTGGGCTAGGAGCACGCGCGGACCAGCGTCAGCGATT
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