mRNA_H-paniculata_contig496.12151.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig496.12151.1 vs. uniprot
Match: D7FUZ5_ECTSI (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ5_ECTSI) HSP 1 Score: 229 bits (583), Expect = 4.750e-67 Identity = 115/146 (78.77%), Postives = 128/146 (87.67%), Query Frame = 1
Query: 16 MLDIIQRCLEADRSEGGAGVSRVSRIDGSSSDLERQQTIKSFNGSTDIPVCLVSTGAGGTGITLTGADRVVLFDPSWNPADDMQAVDRAYRIGQTKDVVVYRMIAAGTVEEKMYEKQVFKDGLRRTIMGGSDKRKKSVRYFSRKEL 453
MLDI++RC+ DR +GGAG+ RV RIDG SDLERQ TI FN + I VCLVSTGAGGTGITLTGADRV+L DPSWNPADDMQAVDRAYRIGQ +DV+VYRMIAAGTVEEKMYEKQ+FKDGLRRT+MGG+ KRKK+VRYFSR EL
Sbjct: 1 MLDILERCINEDRGKGGAGL-RVCRIDGGHSDLERQHTIARFNANNKISVCLVSTGAGGTGITLTGADRVILSDPSWNPADDMQAVDRAYRIGQKRDVIVYRMIAAGTVEEKMYEKQIFKDGLRRTVMGGTVKRKKNVRYFSRSEL 145
BLAST of mRNA_H-paniculata_contig496.12151.1 vs. uniprot
Match: A0A6H5KIE9_9PHAE (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE9_9PHAE) HSP 1 Score: 198 bits (503), Expect = 4.200e-62 Identity = 99/123 (80.49%), Postives = 108/123 (87.80%), Query Frame = 1
Query: 1 SRFIRMLDIIQRCLEADRSEGGAGVSRVSRIDGSSSDLERQQTIKSFNGSTDIPVCLVSTGAGGTGITLTGADRVVLFDPSWNPADDMQAVDRAYRIGQTKDVVVYRMIAAGTVEEKMYEKQV 369
SRF+RMLDI++RC+ DR EGGAG+ RV RIDG SDLERQ TI FN + I VCLVSTGAGGTGITLTGADRV+LFDPSWNPADDMQAVDRAYRIGQ +DV+VYRMIAAGTVEEKMYEKQV
Sbjct: 58 SRFVRMLDILERCINDDRGEGGAGL-RVCRIDGGHSDLERQHTIARFNANNKISVCLVSTGAGGTGITLTGADRVILFDPSWNPADDMQAVDRAYRIGQKRDVIVYRMIAAGTVEEKMYEKQV 179
BLAST of mRNA_H-paniculata_contig496.12151.1 vs. uniprot
Match: A0A836CB04_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB04_9STRA) HSP 1 Score: 176 bits (446), Expect = 3.040e-48 Identity = 93/153 (60.78%), Postives = 113/153 (73.86%), Query Frame = 1
Query: 1 SRFIRMLDIIQRCLEADRSEGGAGVSRVSRIDGSSSDLERQQTIKSFNGSTDIPVCLVSTGAGGTGITLTGADRVVLFDPSWNPADDMQAVDRAYRIGQTKDVVVYRMIAAGTVEEKMYEKQVFKDGLRRTIMG--GSDKRKKSVRYFSRKEL 453
S+ +R+LD++QRCLE+ R RIDGSSSD++R + I SFN + VCL+ST GG GITLTGA+RVV++DPSWNPA+D QAVDRA+RIGQT+DVVVYRMI AGTVEEKMYEKQ+FKDGLR T++ G R FSR EL
Sbjct: 600 SQSVRVLDMLQRCLES-------AAMRFVRIDGSSSDMDRARCISSFNADASLAVCLLSTKVGGYGITLTGANRVVVYDPSWNPAEDRQAVDRAFRIGQTRDVVVYRMITAGTVEEKMYEKQIFKDGLRHTVLDNKGGSARGWGAGLFSRAEL 745
BLAST of mRNA_H-paniculata_contig496.12151.1 vs. uniprot
Match: A0A7S3Y346_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y346_HETAK) HSP 1 Score: 158 bits (399), Expect = 3.770e-46 Identity = 89/152 (58.55%), Postives = 107/152 (70.39%), Query Frame = 1
Query: 1 SRFIRMLDIIQRCL-EADRSEGGAGVSRVSRIDGSSSDLERQQTIKSFNGSTDIPVCLVSTGAGGTGITLTGADRVVLFDPSWNPADDMQAVDRAYRIGQTKDVVVYRMIAAGTVEEKMYEKQVFKDGLRRTIMGGSDKRKKSVRYFSRKEL 453
S+ +RMLDII+ C E D G+ + RIDGS SD+ERQ I FN L+ST GG GITLTGA RVV++DPSWNPA+D QAVDRA+RIGQ K+V+VYRMI +GTVEEKMYEKQV+KDGLRRT++ K RYFS +L
Sbjct: 37 SQSVRMLDIIEECFKETD------GLKSL-RIDGSHSDVERQYQIDLFNSDERYKAFLLSTKVGGFGITLTGASRVVIYDPSWNPAEDSQAVDRAFRIGQQKNVIVYRMITSGTVEEKMYEKQVYKDGLRRTVVEA----KNQQRYFSSNDL 177
BLAST of mRNA_H-paniculata_contig496.12151.1 vs. uniprot
Match: A0A7S0CH49_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CH49_9STRA) HSP 1 Score: 151 bits (381), Expect = 6.250e-40 Identity = 83/152 (54.61%), Postives = 107/152 (70.39%), Query Frame = 1
Query: 1 SRFIRMLDIIQRCLEADRSEGGAGVSRVSRIDGSSSDLERQQTIKSFNG-STDIPVCLVSTGAGGTGITLTGADRVVLFDPSWNPADDMQAVDRAYRIGQTKDVVVYRMIAAGTVEEKMYEKQVFKDGLRRTIMGGSDKRKKSVRYFSRKEL 453
S+ RMLDII+R L ++ RIDGS+ + RQ+ + FN ++DI ++ST A G GITLTGADR +++DPSWNPADD QAVDR YRIGQTK V VYR+IAAGTVEE+MYEKQV KDGL+ T++ S+ + + RYF + EL
Sbjct: 293 SQSTRMLDIIERVLSP---------RKLLRIDGSTKEKNRQKNVDKFNEKNSDIVAMILSTKAAGLGITLTGADRAIVYDPSWNPADDAQAVDRCYRIGQTKSVTVYRLIAAGTVEERMYEKQVHKDGLKHTVL--SNDGRTTRRYFDKTEL 433
BLAST of mRNA_H-paniculata_contig496.12151.1 vs. uniprot
Match: A0A1Z5KQS8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQS8_FISSO) HSP 1 Score: 149 bits (376), Expect = 7.930e-39 Identity = 85/152 (55.92%), Postives = 108/152 (71.05%), Query Frame = 1
Query: 1 SRFIRMLDIIQRCLEADRSEGGAGVSRVSRIDGSSSDLERQQTIKSFNGSTDIP-VCLVSTGAGGTGITLTGADRVVLFDPSWNPADDMQAVDRAYRIGQTKDVVVYRMIAAGTVEEKMYEKQVFKDGLRRTIMGGSDKRKKSVRYFSRKEL 453
S+ +ML+IIQR L G +S VSRIDG + + RQQ + FN + V L+ST AGG GITLTGADRV+LFDPSWNP++D QA+ RAYRIGQT++V V+RMI AGTVEEKMYE+Q++KDG+RR ++ D+ RYF R EL
Sbjct: 541 SQSTKMLNIIQRALL-----GKLHLS-VSRIDGDTKESVRQQLVDDFNNPKSLQKVFLLSTKAGGVGITLTGADRVILFDPSWNPSEDDQAIGRAYRIGQTREVTVFRMITAGTVEEKMYERQLYKDGIRRVVLTIGDE---VQRYFERSEL 683
BLAST of mRNA_H-paniculata_contig496.12151.1 vs. uniprot
Match: A0A7S1IQI0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IQI0_9EUGL) HSP 1 Score: 148 bits (374), Expect = 1.480e-38 Identity = 82/152 (53.95%), Postives = 103/152 (67.76%), Query Frame = 1
Query: 1 SRFIRMLDIIQRCLEADRSEGGAGVSRVSRIDGS-SSDLERQQTIKSFNGSTDIPVCLVSTGAGGTGITLTGADRVVLFDPSWNPADDMQAVDRAYRIGQTKDVVVYRMIAAGTVEEKMYEKQVFKDGLRRTIMGGSDKRKKSVRYFSRKEL 453
SR ++MLDI+Q LE R SR+DGS ERQQ + FN + I CL+++ GG G+TLTGADRV++ DPSWNPA+D QAVDRA+RIGQT+DVVVYR+I GTVEEKMY +QVFK GL MG D +R+F++ EL
Sbjct: 748 SRSVKMLDIVQMWLERQDM-------RHSRLDGSVKQPAERQQIVDRFNANPKIFCCLLTSQVGGVGLTLTGADRVLILDPSWNPANDNQAVDRAFRIGQTRDVVVYRLITCGTVEEKMYRRQVFKQGLALQAMGTDD----VIRHFTKMEL 888
BLAST of mRNA_H-paniculata_contig496.12151.1 vs. uniprot
Match: A0A7S2E6H2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6H2_9STRA) HSP 1 Score: 146 bits (369), Expect = 7.010e-38 Identity = 83/154 (53.90%), Postives = 100/154 (64.94%), Query Frame = 1
Query: 1 SRFIRMLDIIQRCLEADRSEGGAGVSRVSRIDGSSSDLERQQTIKSFNGS-TDIPVCLVSTGAGGTGITLTGADRVVLFDPSWNPADDMQAVDRAYRIGQTKDVVVYRMIAAGTVEEKMYEKQVFKDGLRRTIM--GGSDKRKKSVRYFSRKEL 453
S+ MLDIIQ LE RIDG + + RQ FN +D+ V L+ST A G G+TLTGADR +++DPSWNPADD QAVDR YRIGQT+ V VYR IAAGTVEE+MYEKQV KDG+RR ++ GGS + RYF + EL
Sbjct: 740 SQSTMMLDIIQTVLEP---------LEFRRIDGQTKERSRQSAADEFNAQGSDVDVMLLSTKAAGLGLTLTGADRAIIYDPSWNPADDSQAVDRCYRIGQTRSVTVYRFIAAGTVEERMYEKQVLKDGIRRAVLTSGGSA----TERYFDKNEL 880
BLAST of mRNA_H-paniculata_contig496.12151.1 vs. uniprot
Match: A0A448YWS6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YWS6_9STRA) HSP 1 Score: 144 bits (364), Expect = 2.440e-37 Identity = 76/152 (50.00%), Postives = 109/152 (71.71%), Query Frame = 1
Query: 1 SRFIRMLDIIQRCLEADRSEGGAGVSRVSRIDGSSSDLERQQTIKSFNGS-TDIPVCLVSTGAGGTGITLTGADRVVLFDPSWNPADDMQAVDRAYRIGQTKDVVVYRMIAAGTVEEKMYEKQVFKDGLRRTIMGGSDKRKKSVRYFSRKEL 453
S+ ++LDII+R L+ ++ RIDGS+ + +RQ+ + FN S +DI + L+ST AGG G+TLTGAD +++DPSWNPA+D QAVDR YR+GQ K+V V+R+I AGTVEEK YEKQ+ KDG+RRTI+ + + +YF+++EL
Sbjct: 392 SQSTKVLDIIERVLKYK--------FKLLRIDGSTKEKDRQKYVDEFNESGSDIDIMLISTKAGGQGLTLTGADSCIVYDPSWNPAEDAQAVDRCYRLGQKKEVQVFRLITAGTVEEKRYEKQIHKDGIRRTILTNTGNN--TAKYFTKEEL 533
BLAST of mRNA_H-paniculata_contig496.12151.1 vs. uniprot
Match: A0A7S3Q775_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q775_9STRA) HSP 1 Score: 138 bits (347), Expect = 9.450e-37 Identity = 77/148 (52.03%), Postives = 99/148 (66.89%), Query Frame = 1
Query: 13 RMLDIIQRCLEADRSEGGAGVSRVSRIDGSSSDLERQQTIKSFNGSTD-IPVCLVSTGAGGTGITLTGADRVVLFDPSWNPADDMQAVDRAYRIGQTKDVVVYRMIAAGTVEEKMYEKQVFKDGLRRTIMGGSDKRKKSVRYFSRKEL 453
++LDII++ L+ + G RIDGS + +RQ + FN + L+ST AGG G+TLTGADR +LF PSWNPADD QAVDR YRIGQ K+V VYR I AGTVEE+MYEKQV KDG+RRT++ S + R+F+ +L
Sbjct: 101 KILDIIEKVLDTKINMG--------RIDGSVNGKQRQVIVDQFNDDEEKYDALLISTKAGGVGLTLTGADRAILFSPSWNPADDNQAVDRCYRIGQRKNVTVYRFITAGTVEERMYEKQVHKDGIRRTLVTSSGSA--TERHFTSDDL 238 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig496.12151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig496.12151.1 >prot_H-paniculata_contig496.12151.1 ID=prot_H-paniculata_contig496.12151.1|Name=mRNA_H-paniculata_contig496.12151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp MLDIIQRCLEADRSEGGAGVSRVSRIDGSSSDLERQQTIKSFNGSTDIPVback to top mRNA from alignment at H-paniculata_contig496:27277..30153+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig496.12151.1 ID=mRNA_H-paniculata_contig496.12151.1|Name=mRNA_H-paniculata_contig496.12151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2877bp|location=Sequence derived from alignment at H-paniculata_contig496:27277..30153+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig496:27277..30153+ >mRNA_H-paniculata_contig496.12151.1 ID=mRNA_H-paniculata_contig496.12151.1|Name=mRNA_H-paniculata_contig496.12151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig496:27277..30153+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |