mRNA_H-paniculata_contig4959.12149.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4959.12149.1
Unique NamemRNA_H-paniculata_contig4959.12149.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4959.12149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4959contigH-paniculata_contig4959:7926..8831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size319
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930461.5821402-CDS-H-paniculata_contig4959:7925..80461622930461.5821402-CDS-H-paniculata_contig4959:7925..8046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4959 7926..8046 -
1691481302.3184714-CDS-H-paniculata_contig4959:7925..80461691481302.3184714-CDS-H-paniculata_contig4959:7925..8046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4959 7926..8046 -
1622930461.6026664-CDS-H-paniculata_contig4959:8634..88311622930461.6026664-CDS-H-paniculata_contig4959:8634..8831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4959 8635..8831 -
1691481302.3270597-CDS-H-paniculata_contig4959:8634..88311691481302.3270597-CDS-H-paniculata_contig4959:8634..8831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4959 8635..8831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4959.12149.1prot_H-paniculata_contig4959.12149.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4959 7926..8831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4959.12149.1

>prot_H-paniculata_contig4959.12149.1 ID=prot_H-paniculata_contig4959.12149.1|Name=mRNA_H-paniculata_contig4959.12149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
GLIWRDTLEFRELLPVQRILYSRYGPSRIGKTIATPENKYMPERLWKLWN
RRTLTPSHSMAKTLQRYLFYDAWNILDASTAALAMLALIFRIIGQQGATE
SESVVG
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mRNA from alignment at H-paniculata_contig4959:7926..8831-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4959.12149.1 ID=mRNA_H-paniculata_contig4959.12149.1|Name=mRNA_H-paniculata_contig4959.12149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=906bp|location=Sequence derived from alignment at H-paniculata_contig4959:7926..8831- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTTAATTTGGAGAGACACACTGGAGTTCCGGGAGCTTCTACCCGTTCA
ACGAATCCTATATTCACGTTACGGACCCTCCCGAATCGGCAAAACGATTG
CAACACCCGAGAACAAATATATGCCAGAAAGATTGTGGAAACTTTGGAAC
AGGCGCACGCTAACGCCATCACACTCGATGGCTAAGACCCTACAGAGGTA
ACAGACTCCACGCGGATGTACGACAGACTGGACGTCGTTTTGTATGAGAC
TTTGAAGTGTCCTAGCACAATTGATTTCGTGGCCAACGATGTATCCTTGA
TATTTTGCTGCAGGACCCACTCACGCACATATTTACACCCATTTTTGGAT
ACCGCCCCCCCGATTGATTCCCAAGCTGTGGTCCCCCTTGTATGACCTCA
AATGGATACTGTTGTTGAACCATCTCCTTTCACCGCCACTGAGTCGAGGC
CCGCAAGGCGTTATGATTAGTGTCAGTCCTCCACTACCAGCTCGTGAAGC
CAATCATTAGAGGGGCGCCGATGCTAATCACTGCTGTTGTTCAGGTGTAT
TTTTCGGGGTGCTCTATTACAGAGCCAGCCGACAGAGTGCCAGCACGGTC
CACGTATGCCACCATGCTCTTCAAGTCACATGGACATCCTCTTGTTGTCT
CGCACGTTCTATGAAACAGATTTTCGTGCATCACACGGAGAATAAATATA
GAAGTCTTGTTGCGTTTAACAAGGGTCTAATTGTATCCCGTTGCGATGGT
GTCAAACTACTATGTCACTGTTGCACTGTTGCCAGGTACCTCTTCTACGA
CGCGTGGAATATCCTGGACGCGTCGACTGCTGCCTTGGCCATGCTAGCTC
TGATTTTCCGGATTATCGGTCAACAGGGTGCGACAGAAAGCGAGAGTGTG
GTGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4959:7926..8831-

>mRNA_H-paniculata_contig4959.12149.1 ID=mRNA_H-paniculata_contig4959.12149.1|Name=mRNA_H-paniculata_contig4959.12149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig4959:7926..8831- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTTAATTTGGAGAGACACACTGGAGTTCCGGGAGCTTCTACCCGTTCA
ACGAATCCTATATTCACGTTACGGACCCTCCCGAATCGGCAAAACGATTG
CAACACCCGAGAACAAATATATGCCAGAAAGATTGTGGAAACTTTGGAAC
AGGCGCACGCTAACGCCATCACACTCGATGGCTAAGACCCTACAGAGGGC
TTAATTTGGAGAGACACACTGGAGTTCCGGGAGCTTCTACCCGTTCAACG
AATCCTATATTCACGTTACGGACCCTCCCGAATCGGCAAAACGATTGCAA
CACCCGAGAACAAATATATGCCAGAAAGATTGTGGAAACTTTGGAACAGG
CGCACGCTAACGCCATCACACTCGATGGCTAAGACCCTACAGAGGTACCT
CTTCTACGACGCGTGGAATATCCTGGACGCGTCGACTGCTGCCTTGGCCA
TGCTAGCTCTGATTTTCCGGATTATCGGTCAACAGGGTGCGACAGAAAGC
GAGAGTGTGGTGGGAGTACCTCTTCTACGACGCGTGGAATATCCTGGACG
CGTCGACTGCTGCCTTGGCCATGCTAGCTCTGATTTTCCGGATTATCGGT
CAACAGGGTGCGACAGAAAGCGAGAGTGTGGTGGGA
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