mRNA_H-paniculata_contig49552.12144.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: A0A8I6XHP4_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XHP4_HORVV) HSP 1 Score: 84.7 bits (208), Expect = 7.570e-17 Identity = 40/109 (36.70%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 7 EMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
EM+ + +G WT V RP N+ V +YK K G + K K RLVA G Q +G+ + E +P + + +++L+LAA +DWK+ H D + A+L + +E++VE P
Sbjct: 689 EMKAIESNGTWTLVTRPPNQKTVGLKWVYKLKKDTKGAIVKYKARLVAKGYVQRQGVDYDEVFAPVARIETVRVLLALAAQEDWKVHHMDVKSAFLNGDLTEEVYVEQP 797
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: A0A5A7TC06_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TC06_CUCME) HSP 1 Score: 84.0 bits (206), Expect = 1.370e-16 Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 1
Query: 1 KVEMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
K EM + +G W V+ PK K + +YK K DG +EK K RLVA G+ Q GI F+E SP + ++VL+LAA Q W + D + +L +++E++VE P
Sbjct: 457 KEEMTTIEKNGTWKMVDLPKGKNAIDLKWVYKTKFAADGSLEKHKARLVAKGHAQQHGINFEETFSPVARFETVRVVLALAAQQQWSVYQFDVKSDFLNEELEEEVYVEQP 567
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY) HSP 1 Score: 83.2 bits (204), Expect = 2.690e-16 Identity = 42/109 (38.53%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 7 EMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
EM+ L D + VE P+N +V + +++ K +GK+E K RLVA G QI GI F + +P +AS +++L+LAA DW + D + AYL A +++EIF++ P
Sbjct: 982 EMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQP 1090
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: A0A146H565_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H565_MYCCL) HSP 1 Score: 83.2 bits (204), Expect = 2.700e-16 Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 1
Query: 7 EMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPID--QEIFVEIP 333
E+ L +G WT V RP + +V + + K G++EK K RLVA G Q++G+ + E +P +AS ++VL++AA DW + DF AYL +D +EIF+E P
Sbjct: 1084 ELDSLKSAGTWTVVPRPSGRNVVDCKWVLRIKKNAAGEIEKYKARLVARGFTQVQGVDYYETFAPTAKIASIRLVLAIAARNDWDIDMFDFNSAYLNGELDTDEEIFMEQP 1194
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: UPI0008FD5801 (uncharacterized protein LOC109116481 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI0008FD5801) HSP 1 Score: 82.0 bits (201), Expect = 4.740e-16 Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 1
Query: 4 VEMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
VE+ L+ +G W+ V P K V +YK K DG VE+ K RLVA G Q +G+ F + SP + + K++L+LAA Q+W L D A+L +++EI++ +P
Sbjct: 3 VELDALVGNGTWSVVSLPPGKRAVGCKWVYKIKRKADGSVERYKARLVAKGFTQQEGVDFIDTFSPVAKLVTVKLLLALAAKQNWILTQMDVTNAFLHGDLEEEIYMSLP 112
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: A0A401GTF6_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GTF6_9APHY) HSP 1 Score: 82.0 bits (201), Expect = 6.830e-16 Identity = 41/109 (37.61%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 7 EMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
EMQ L D + VE P+N IV + I++ K +G++E K RLVA G Q+ G+ F + +P +AS +++L+LAA DW + D + AYL A ++++IF++ P
Sbjct: 951 EMQNLRDHHTYDLVEPPENTNIVGSKFIFRIKHNANGEIESYKARLVAQGFTQVPGVDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNAELEEDIFMKQP 1059
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: A0A4S4M1W0_9APHY (Uncharacterized protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M1W0_9APHY) HSP 1 Score: 82.0 bits (201), Expect = 6.850e-16 Identity = 36/110 (32.73%), Postives = 71/110 (64.55%), Query Frame = 1
Query: 7 EMQGLIDSGVWTQVERPKNKL-IVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
E++ L+ + WT VERP + + +V + ++ + K G+++K K RLVA G Q+ G+ + E +P ++S +++L++AA +W ++ DF AYL +P+D+++++E P
Sbjct: 1176 EIENLVANNTWTVVERPPDDVNVVDSKIVLRVKKNAAGEIDKYKARLVARGFTQVHGVDYFETFAPVAKLSSFRLLLAIAARNNWDIKSFDFSSAYLNSPLDEDVYMEQP 1285
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: UPI000B788C25 (uncharacterized protein LOC110730797 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B788C25) HSP 1 Score: 79.7 bits (195), Expect = 8.150e-16 Identity = 38/109 (34.86%), Postives = 61/109 (55.96%), Query Frame = 1
Query: 7 EMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
E+ L + W V PK K ++ ++K K+ DG VE+ K RLVA G Q GI + E SP + + + +LSLAA+Q WK+ D A+L + +E+++++P
Sbjct: 4 EIDALTANNTWVLVPLPKEKKLIGCKWVFKVKLKADGTVERLKARLVAKGFTQKYGIDYLETFSPVVKMTTKRCILSLAASQSWKIHQLDLNNAFLHGELHEEVYMKVP 112
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: A0A6D2HEE2_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HEE2_9BRAS) HSP 1 Score: 81.6 bits (200), Expect = 8.600e-16 Identity = 38/109 (34.86%), Postives = 63/109 (57.80%), Query Frame = 1
Query: 7 EMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
E+ L DSG W V+ P K + ++K K DG VE+ K RLVA GNRQ +G+ + E +P + + + L++AA+++W L D A+L +D+E++++ P
Sbjct: 42 EITALEDSGTWDLVDLPPGKRAIGCKWVFKLKFNSDGTVERHKARLVALGNRQEEGVDYDETFAPVIKMTTVRTFLNVAASRNWALHQMDVHNAFLHGTLDEEVYMKPP 150
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: A0A2P6S8W7_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S8W7_ROSCH) HSP 1 Score: 80.9 bits (198), Expect = 1.730e-15 Identity = 36/111 (32.43%), Postives = 66/111 (59.46%), Query Frame = 1
Query: 1 KVEMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
++E+Q L D+ W+ V P +K + +YK K DG +E+ K RLVA G Q++G+ ++E +P + + +++LSLAA Q+W L D A+L + +++++ +P
Sbjct: 783 RLEVQALQDNKTWSLVPPPAHKRPIGCKWVYKIKYNPDGTIERYKARLVAKGYSQVEGLDYRETFAPVAKLTTVRVLLSLAAQQNWHLHQLDVNNAFLNGDLHEDVYMHLP 893 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig49552.12144.1 >prot_H-paniculata_contig49552.12144.1 ID=prot_H-paniculata_contig49552.12144.1|Name=mRNA_H-paniculata_contig49552.12144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp MQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNback to top mRNA from alignment at H-paniculata_contig49552:912..1244+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig49552.12144.1 ID=mRNA_H-paniculata_contig49552.12144.1|Name=mRNA_H-paniculata_contig49552.12144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at H-paniculata_contig49552:912..1244+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig49552:912..1244+ >mRNA_H-paniculata_contig49552.12144.1 ID=mRNA_H-paniculata_contig49552.12144.1|Name=mRNA_H-paniculata_contig49552.12144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig49552:912..1244+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |