mRNA_H-paniculata_contig4949.12134.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4949.12134.1
Unique NamemRNA_H-paniculata_contig4949.12134.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4949.12134.1 vs. uniprot
Match: D8LTF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTF3_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.700e-34
Identity = 84/191 (43.98%), Postives = 99/191 (51.83%), Query Frame = 1 
Query:    1 MTGIAHSDGVLCCPSGCGTCGGTGCGSVPMAWVAPGEIEGTVSSDIPDGDTSGDYCCSSVRGNTTTICGV----DGGEPPCLIP--------TVTPTTSSN--STCVV--VEGIADKTGTRCCPLGCGMCEGNGCGSVDMSDVLPGETITNDM----NSADYCCSSAFEDPDIAVCAV----DGGEAPCII 501
            + GI  + G  CCP GCG CGG GCG V M  VAP     TV  D+P    SGDYCC+S        CG     D G PPC IP        T+ P  SSN    C +  + GI D TGTRCCP GCGMC G GCG +DM+ V P  T+  D+     S DYCC+S  +  D+  C      D G  PC+I
Sbjct:  262 IPGIMDTSGTRCCPQGCGMCGGVGCGLVDMNLVAP-----TVEGDVPIDAKSGDYCCTSGVDTRDVTCGTGTGDDEGYPPCFIPAGTGTVTATLAPEVSSNLIDNCGLPGIPGIMDATGTRCCPQGCGMCGGGGCGLIDMNLVAP--TVEGDVPIDAKSGDYCCTSGVDTRDVT-CGTGTGDDEGYPPCLI 444
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BLAST of mRNA_H-paniculata_contig4949.12134.1 vs. uniprot
Match: A0A6H5JLD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD2_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 9.980e-26
Identity = 73/170 (42.94%), Postives = 87/170 (51.18%), Query Frame = 1 
Query:   58 CGGTGCGSVPMAWVAPGEIEGTVSSDIPDGDTSGDYCCSSVRGNTTTICGV----DGGEPPCLIP--TVTPTTSSNSTCVVVE--------GIADKTGTRCCPLGCGMCEGNGCGSVDMSDVLPGETITNDM----NSADYCCSSAFEDPDIAVCAV----DGGEAPCII 501
            CGG GCG V M  VAP     TV  D+P    SGDYCC+S   +    CG     D G PPC IP  TVT T +      +++        GI D +GTRCCP GCGMC G GCG VDM+ V P  T+  D+     S DYCC+S  +  D+  C      D G  PC I
Sbjct:    2 CGGPGCGLVDMNVVAP-----TVEGDVPIDAKSGDYCCTSGVDSRDVTCGTGVGDDEGYPPCFIPVGTVTATLAPEVASSLIDNCGLPDMPGIMDASGTRCCPQGCGMCGGPGCGLVDMNVVAP--TVEGDVPIDAKSGDYCCTSGVDSRDVT-CGTGTGDDEGYPPCFI 163
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BLAST of mRNA_H-paniculata_contig4949.12134.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.820e-11
Identity = 61/168 (36.31%), Postives = 74/168 (44.05%), Query Frame = 1 
Query:   22 DGVLCCPSGCGTCGGTGCGSVPMAWVAPGEIEGTVSSDIPDGD--TSGDYCCSSVRGNTTTICGVDGGEPPCLI-----PTVTPT-TSSNSTCVVVEGIADKTGTRCCPLGCGMCEGNGCGSVDMSDVLPGETITNDMNSADYCCSSAFEDPDIAVCAVDGGEAPCII 501
            +GV+CCP GCG CGGTGC +        G   G   S    G    SG YC  +              + PC+I     P+ TP+ T SN     VEGI D  G  CCPLGCG C G GC +   +  L           AD CC  + +  D   C  +  EAPCII
Sbjct:  280 NGVVCCPLGCGQCGGTGCNT-------SGAAAGLDGSSCCGGSIKASGKYCDET-------------NDAPCIIGSSPAPSPTPSETCSNG----VEGI-DGNGVVCCPLGCGQCGGAGCTTSGAAAGL----------GADSCCGGSIKASD-EYCD-ETNEAPCII 410
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BLAST of mRNA_H-paniculata_contig4949.12134.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.540e-10
Identity = 55/168 (32.74%), Postives = 73/168 (43.45%), Query Frame = 1 
Query:   22 DGVLCCPSGCGTCGGTGCGSVPMAWVAPGEIEGTVSSDIPDGDTSGDYCCSSVRGNTTTICGVDGGEPPCLIPTVTPTTSSNS-------TCVV-VEGIADKTGTRCCPLGCGMCEGNGCGSVDMSDVLPGETITNDMNSADYCCSSAFEDPDIAVCAVDGGEAPCII 501
            +GV+CCP GCG C G GCG+        G   G  S            CC +   +    C  D  E PC+I +   T   +S       TC    EGI D  G  CCP+GCG C G+GCG+   ++ L  E+          CC +  +   + +   D  EAPCII
Sbjct:  431 NGVVCCPIGCGQCAGDGCGTA-------GSANGLGSES----------CCGNGVKSLGLYCD-DTNEAPCIIGSRPDTDDVDSESADETQTCSDGTEGI-DGNGVVCCPIGCGQCAGDGCGTAGSANGLGSES----------CCGNGVKS--LGLYCDDTNEAPCII 567
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BLAST of mRNA_H-paniculata_contig4949.12134.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 5.240e-10
Identity = 58/172 (33.72%), Postives = 70/172 (40.70%), Query Frame = 1 
Query:   22 DGVLCCPSGCGTCGGTGCGSVPMAWVAPGEIEGTVSSDIPDGDTSGDYCCSSVRGNTTTICGVDGGEPPCLIPTVTPTTSSNS-----------TCVV-VEGIADKTGTRCCPLGCGMCEGNGCGSVDMSDVLPGETITNDMNSADYCCSSAFEDPDIAVCAVDGGEAPCII 501
            +GV+CCP GCG CGG GC +        G   G  S            CC     +    C  D  E PC+I +   T   +S           TC   +EGI D  G  CCPL CG C G GCGS   +  L GE+          CCSS     ++     D   APCII
Sbjct:  583 NGVVCCPIGCGQCGGDGCSTA-------GSANGLGSES----------CCGGGVKSLGVYCD-DTNEAPCIIGSAPDTDDVDSGISEESADDTQTCSNGIEGI-DHKGEVCCPLACGQCGGTGCGSAGSAFELDGES----------CCSSQVLAGNVY--CEDTNAAPCII 723
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4949.12134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LTF3_ECTSI2.700e-3443.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLD2_9PHAE9.980e-2642.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC43_9PHAE3.820e-1136.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G651_ECTSI1.540e-1032.74Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectoca... [more]
A0A6H5JUS5_9PHAE5.240e-1033.72MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4949contigH-paniculata_contig4949:703..2148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue5.2e-07
Seed eggNOG ortholog2880.D7FQV4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size501
Cds size501
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930459.7573178-CDS-H-paniculata_contig4949:702..9591622930459.7573178-CDS-H-paniculata_contig4949:702..959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4949 703..959 -
1691481301.5081666-CDS-H-paniculata_contig4949:702..9591691481301.5081666-CDS-H-paniculata_contig4949:702..959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4949 703..959 -
1622930459.7751532-CDS-H-paniculata_contig4949:1904..21481622930459.7751532-CDS-H-paniculata_contig4949:1904..2148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4949 1905..2148 -
1691481301.5194745-CDS-H-paniculata_contig4949:1904..21481691481301.5194745-CDS-H-paniculata_contig4949:1904..2148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4949 1905..2148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4949.12134.1prot_H-paniculata_contig4949.12134.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4949 703..2148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4949.12134.1

>prot_H-paniculata_contig4949.12134.1 ID=prot_H-paniculata_contig4949.12134.1|Name=mRNA_H-paniculata_contig4949.12134.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
MTGIAHSDGVLCCPSGCGTCGGTGCGSVPMAWVAPGEIEGTVSSDIPDGD
TSGDYCCSSVRGNTTTICGVDGGEPPCLIPTVTPTTSSNSTCVVVEGIAD
KTGTRCCPLGCGMCEGNGCGSVDMSDVLPGETITNDMNSADYCCSSAFED
PDIAVCAVDGGEAPCII
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mRNA from alignment at H-paniculata_contig4949:703..2148-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4949.12134.1 ID=mRNA_H-paniculata_contig4949.12134.1|Name=mRNA_H-paniculata_contig4949.12134.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1446bp|location=Sequence derived from alignment at H-paniculata_contig4949:703..2148- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCGGCATCGCCCACTCTGATGGCGTCCTTTGCTGCCCTTCTGGCTG
CGGGACTTGCGGCGGAACGGGCTGTGGCAGTGTGCCCATGGCTTGGGTAG
CACCTGGGGAGATCGAGGGTACCGTATCGAGCGATATCCCGGATGGCGAC
ACCTCTGGGGACTACTGCTGCAGCAGCGTGAGGGGCAACACCACCACCAT
CTGCGGGGTGGACGGGGGGGAACCTCCCTGCCTCATCCCCACGGGTAGGT
TCATATGTGGAATTTTTTATGCATTCATGTACTTCATCGGTCTCAGAAGT
ATACTCGGTTACGATTATAGAGGCACTCAAACATCTCCGATATATATATA
TATATTTGATCCACATGTTTTTTGGGTTGAAACCCAATCATTTTGGTTCA
ACAGTCGACATTTAACACCAAAATACACACCGTGAAAAATGTAGTCGGCC
GAAAAAGGATCTCTTTTGGAACTTGAAGTAGTGTCCCACGAGTACAGCAT
GTCGTCATTAGAGACGTACTTGAGTATCTCCGATTTTTAATTAAATATGT
ATATAATCCTACATGCTTTTGTGGTTGAACCCAAAACATTGAGTCAAAAA
AAGCTCTCAACCGAAAAACGCAAAGAGGTGCACTATTTTTTTCGGGTTCT
ATGGGTAAAAATCCCAAAAAAGCACCTTTTTTCGACTGAGCACTTTTTGC
ATGGTGCGTGTTTTGGTGTTAAAAGTCAACTACGACCCAAAAATTGGGTT
TCAACCCCAAAGCATGCAGAATTCCATAAAAAAATAGAACACATGGAGAT
GTTTAAGCGCCTCTATAATCATACCTGAATATATTTATGAGACAGGGGAA
GTATATATATATATATATATATATATATATATATATATATGGCTGAGAAC
AACAATGGCTCGTTAGCTTGTGACGCTCCACAAGCCAGTCATTAGCTTGT
GTGTTTTTTATTCGTCTCTTAAATAATGTATTTTCGGCTGGATATGCAAA
ACTTGAAGGTTATTTGGCAATTCTGATCCCAGCAGACGTTCACTGGATGG
TGTAATTTTGATTTATCTAAGTACATCGATGTACATCCATGAGACTAAAT
TTCACAACCATTGAGCCCCCCTCCTCTCCCCGTAGGAACAGTAGCGGCTA
CCCCCGCGCCCACCGTGGAAGTGATGCCAGCTGTGGAAGTGACGCCGACC
ACCTCGTCCAATAGTACCTGTGTAGTTGTCGAAGGGATCGCGGACAAGAC
AGGGACGCGGTGCTGCCCGCTCGGCTGCGGAATGTGCGAAGGGAACGGCT
GCGGCTCCGTCGACATGAGCGACGTGCTACCGGGGGAGACTATCACGAAT
GACATGAATTCGGCCGACTACTGCTGCTCGAGCGCGTTTGAGGACCCCGA
CATCGCCGTGTGCGCGGTGGATGGGGGGGAGGCGCCCTGCATTATA
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Coding sequence (CDS) from alignment at H-paniculata_contig4949:703..2148-

>mRNA_H-paniculata_contig4949.12134.1 ID=mRNA_H-paniculata_contig4949.12134.1|Name=mRNA_H-paniculata_contig4949.12134.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig4949:703..2148- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCGGCATCGCCCACTCTGATGGCGTCCTTTGCTGCCCTTCTGGCTG
CGGGACTTGCGGCGGAACGGGCTGTGGCAGTGTGCCCATGGCTTGGGTAG
CACCTGGGGAGATCGAGGGTACCGTATCGAGCGATATCCCGGATGGCGAC
ACCTCTGGGGACTACTGCTGCAGCAGCGTGAGGGGCAACACCACCACCAT
CTGCGGGGTGGACGGGGGGGAACCTCCCTGCCTCATCCCCACGGATGACC
GGCATCGCCCACTCTGATGGCGTCCTTTGCTGCCCTTCTGGCTGCGGGAC
TTGCGGCGGAACGGGCTGTGGCAGTGTGCCCATGGCTTGGGTAGCACCTG
GGGAGATCGAGGGTACCGTATCGAGCGATATCCCGGATGGCGACACCTCT
GGGGACTACTGCTGCAGCAGCGTGAGGGGCAACACCACCACCATCTGCGG
GGTGGACGGGGGGGAACCTCCCTGCCTCATCCCCACGGTGACGCCGACCA
CCTCGTCCAATAGTACCTGTGTAGTTGTCGAAGGGATCGCGGACAAGACA
GGGACGCGGTGCTGCCCGCTCGGCTGCGGAATGTGCGAAGGGAACGGCTG
CGGCTCCGTCGACATGAGCGACGTGCTACCGGGGGAGACTATCACGAATG
ACATGAATTCGGCCGACTACTGCTGCTCGAGCGCGTTTGAGGACCCCGAC
ATCGCCGTGTGCGCGGTGGATGGGGGGGAGGCGCCCTGCATTATATGACG
CCGACCACCTCGTCCAATAGTACCTGTGTAGTTGTCGAAGGGATCGCGGA
CAAGACAGGGACGCGGTGCTGCCCGCTCGGCTGCGGAATGTGCGAAGGGA
ACGGCTGCGGCTCCGTCGACATGAGCGACGTGCTACCGGGGGAGACTATC
ACGAATGACATGAATTCGGCCGACTACTGCTGCTCGAGCGCGTTTGAGGA
CCCCGACATCGCCGTGTGCGCGGTGGATGGGGGGGAGGCGCCCTGCATTA
TA
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