mRNA_H-paniculata_contig4948.12131.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4948.12131.1
Unique NamemRNA_H-paniculata_contig4948.12131.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4948.12131.1 vs. uniprot
Match: A0A6H5KQH0_9PHAE (Pep3_Vps18 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH0_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 2.420e-81
Identity = 144/196 (73.47%), Postives = 160/196 (81.63%), Query Frame = 3 
Query:  582 GEPSSNLAPTTR--GEPPIFSLKRMDLEGASSGRRGKFRAASSSWSILAVAVGNGNLAMATSDCCVIRWNLANMEREGEAEEVEISKRPEDTIHKIFFDPTGNHLLACLHGGETYYLHSGTARPKRLAKWSGVVVEAVAFDAQRCTEGSTKGIVIGTRSGDLYESSLESNGKERPFSLVYSLDRRQQGAGAGRDGG 1163
            G   SNL P  +  GEPPIFSL+R+D   ASS       ++S+SWSILAVAVGNG LAMATSDCC+IRW+ ++    G +EE+EISKR EDTIHK+F DPTGNHLLACLHGGETYYLHS T RPKRL KWSGVVVEAVAFD+QRCTEGSTKGIV+GTRSGDLYESSLESNGKERPFSLV+SL RRQ   G G DGG
Sbjct:  163 GPDGSNLVPAAKRGGEPPIFSLQRLDALKASSS------SSSASWSILAVAVGNGTLAMATSDCCIIRWSASSPH--GGSEEIEISKRQEDTIHKLFLDPTGNHLLACLHGGETYYLHSATTRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSLESNGKERPFSLVFSLSRRQSRGGDGTDGG 350
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BLAST of mRNA_H-paniculata_contig4948.12131.1 vs. uniprot
Match: D8LI30_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI30_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 6.820e-69
Identity = 107/132 (81.06%), Postives = 115/132 (87.12%), Query Frame = 3 
Query:  750 MATSDCCVIRWNLANMEREGEAEEVEISKRPEDTIHKIFFDPTGNHLLACLHGGETYYLHSGTARPKRLAKWSGVVVEAVAFDAQRCTEGSTKGIVIGTRSGDLYESSLESNGKERPFSLVYSLDRRQQGAG 1145
            MATSDCC+IRWN +     G +EE+EISKR EDTIHK+F DPTGNHLLACLHGGETYYLHS T RPKRL KWSGVVVEAVAFD+QRCTEGSTKGIV+GTRSGDLYESSLESNGKERPF LV+SL RRQ   G
Sbjct:    1 MATSDCCIIRWNASTPH--GGSEEIEISKRQEDTIHKLFLDPTGNHLLACLHGGETYYLHSATTRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSLESNGKERPFGLVFSLSRRQSRGG 130
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BLAST of mRNA_H-paniculata_contig4948.12131.1 vs. uniprot
Match: A0A836CAW5_9STRA (Pep3_Vps18 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW5_9STRA)

HSP 1 Score: 130 bits (326), Expect = 4.370e-29
Identity = 60/150 (40.00%), Postives = 98/150 (65.33%), Query Frame = 3 
Query:  708 WSILAVAVGNGNLAMATSDCCVIRWNLANMERE--------GEAEEVEISKRPEDTIHKIFFDPTGNHLLACLHGGETYYLHSGTARPKRLAKWSGVVVEAVAFDAQRCTEGSTKGIVIGTRSGDLYESSLESNGKERPFSLVYSLDRRQ 1133
            WSIL VA     +AMATSDC VIRW+      +        G  +EVEIS+R ED+I  ++ D +G+H++  LH GE ++LH G+ RP+RL++W  +    +AFD +RC++ +   ++IGT +G++Y+ +++++GK++P SL+Y L   Q
Sbjct:   84 WSILCVAAAGSTIAMATSDCKVIRWSAPITAAQTSKGSGAGGPCDEVEISRRQEDSIRGLYLDASGHHIVTVLHSGEAWHLHRGSNRPRRLSRWGDLRATCIAFDRRRCSDAAAA-LIIGTAAGEIYDGAVDASGKDKPPSLLYVLSADQ 232
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BLAST of mRNA_H-paniculata_contig4948.12131.1 vs. uniprot
Match: A0A7S2BMK1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BMK1_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.060e-20
Identity = 37/91 (40.66%), Postives = 66/91 (72.53%), Query Frame = 3 
Query:  852 IHKIFFDPTGNHLLACLHGGETYYLHSGTARPKRLAKWSGVVVEAVAFDAQRCTEGSTKGIVIGTRSGDLYESSLESNGKERPFSLVYSLD 1124
            I+++F D  G+HL+ C+   + YYLH+ + RPK+++ W G ++EAV+FD  + +E +TK +++GT  G++ E++L+S GKE+  +L+Y LD
Sbjct:    2 IYRLFIDERGHHLIICMKSNDCYYLHARSNRPKKISSWKGKIIEAVSFDRDQVSEAATKAMLLGTADGEILETALDSQGKEKAPALLYKLD 92
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BLAST of mRNA_H-paniculata_contig4948.12131.1 vs. uniprot
Match: A7RKZ9_NEMVE (Vacuolar protein sorting-associated protein 18 homolog n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RKZ9_NEMVE)

HSP 1 Score: 98.6 bits (244), Expect = 1.530e-18
Identity = 58/177 (32.77%), Postives = 95/177 (53.67%), Query Frame = 3 
Query:  612 TRGEPPIFSLKRMDLEGASSGRRGKFRAASSSWSILAVAVGNGNLAMATSDCCVIRWNLANMEREGEAEEVEISKRPEDTIHKIFFDPTGNHLLACLHGGETYYLHSGTARPKRLAKWSGVVVEAVAFDAQRCTEGSTKGIVIGTRSGDLYESSLE------SNGKERPFSLVYSLD 1124
            T  E PIF  ++++    S+              ++ + V N  +A+  S   ++R +LAN     E + VE+ KR +D IH+IF DPT  HL+ C+   E+YYL   + +PK + K  G ++ AVA++  + TE ST+ I++GT SG L+E+ LE        G ER    +Y+++
Sbjct:   12 TEDEIPIFRRQKINFRPPSN--------------MVDLVVSNNTVAVGLSTNVIMRIDLANT---SEIDSVEVCKRLDDAIHRIFIDPTARHLIVCMKSQESYYLARNSKKPKPMTKMRGHLISAVAWNKSKLTESSTQTILLGTSSGLLFETELEPEEKFFQGGVERFCKQLYNIN 171
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BLAST of mRNA_H-paniculata_contig4948.12131.1 vs. uniprot
Match: A0A3M6T9G8_POCDA (Vacuolar protein sorting-associated protein 18 homolog n=4 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6T9G8_POCDA)

HSP 1 Score: 95.9 bits (237), Expect = 1.200e-17
Identity = 50/143 (34.97%), Postives = 88/143 (61.54%), Query Frame = 3 
Query:  714 ILAVAVGNGNLAMATSDCCVIRWNLANMEREGEAEEVEISKRPEDTIHKIFFDPTGNHLLACLHGGETYYLHSGTARPKRLAKWSGVVVEAVAFDAQRCTEGSTKGIVIGTRSGDLYESSLE------SNGKERPFSLVYSLD 1124
            I+ V V N  +A+A S+  ++R +L N     E + V+I+KR +D++H+IF DPT  HL+ C+   E++YL   + +PK LAK  G ++ A+A++  + TE ST+ I++GT  G ++E+ LE        G E+ +  +Y+++
Sbjct:   58 IVDVVVCNNMVAIALSNNVLMRLDLTNP---SEIDSVDITKRMDDSVHRIFMDPTARHLIVCMKSQESFYLARNSKKPKPLAKMKGHLINAIAWNKSKLTESSTQTILLGTTKGLVFETELEPEEKFFQGGLEKFWKQLYNVN 197
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BLAST of mRNA_H-paniculata_contig4948.12131.1 vs. uniprot
Match: UPI0009E26102 (vacuolar protein sorting-associated protein 18 homolog n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E26102)

HSP 1 Score: 95.1 bits (235), Expect = 1.900e-17
Identity = 53/151 (35.10%), Postives = 89/151 (58.94%), Query Frame = 3 
Query:  621 EPPIFSLKRMDLEGASSGRRGKFRAASSSWSILAVAVGNGNLAMATSDCCVIRWNLANMEREGEAEEVEISKRPEDTIHKIFFDPTGNHLLACLHGGETYYLHSGTARPKRLAKWSGVVVEAVAFDAQRCTEGSTKGIVIGTRSGDLYESS 1073
            E PIF  ++++    S+              I+ V V N  +A+A S+  ++R +L+N     E + V+I+KR +D+IH+IF DPT  HL+ C+   E++YL   + +PK LAK  G ++ A+A++  + TE ST+ I++GT  G LY+S+
Sbjct:   41 EVPIFRRQKINFRPPST--------------IVDVVVCNNMVAIALSNNVLMRLDLSNP---SEIDRVDITKRVDDSIHRIFMDPTARHLIVCMKSQESFYLARNSKKPKPLAKMKGHLINAIAWNKSKLTESSTQTILLGTTKGLLYQST 174
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BLAST of mRNA_H-paniculata_contig4948.12131.1 vs. uniprot
Match: A0A261Y872_9FUNG (Galactose-1-phosphate uridylyltransferase n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y872_9FUNG)

HSP 1 Score: 95.5 bits (236), Expect = 1.920e-17
Identity = 65/175 (37.14%), Postives = 96/175 (54.86%), Query Frame = 3 
Query:  621 EPPIFSLKRMDLEGASSGRRGKFRAASSSWSILAVAVGNGNLAMATSDCCVIRWNLANMEREGEAEEVEISKRPED-TIHKIFFDPTGNHLLACLHGGETYYLHSGTARPKRLAKWSGVVVEAVAFDAQRC-TEGSTKGIVIGTRSGDLYESSLESN-----GKERPFSLVYSLD 1124
            E PIFSL  +  +  +               + A+AV N  L MA  +  ++R NL   ++  E E++EI  +  D  IHKIFFDPTG HL+     GE YYL+    R K+L K  G+V+E+VA++     T  STK I++GTR+G +YE+ LE++      +ER    VYS++
Sbjct:   51 ETPIFSLDPVQFQFPAR--------------LAALAVSNEILIMALHNFHILRINL---QQAHEVEDIEIPHKSSDGLIHKIFFDPTGRHLIMTTDKGENYYLYQKWTRTKQLGKLKGLVIESVAWNKTALNTSTSTKEILLGTRNGLIYETCLEASEDYLRNQERYLRQVYSVN 208
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BLAST of mRNA_H-paniculata_contig4948.12131.1 vs. uniprot
Match: A0A6S7HQQ7_PARCT (Vacuolar protein sorting-associated protein 18 homolog n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HQQ7_PARCT)

HSP 1 Score: 94.7 bits (234), Expect = 2.620e-17
Identity = 50/127 (39.37%), Postives = 81/127 (63.78%), Query Frame = 3 
Query:  711 SILAVAVGNGNLAMATSDCCVIRWNLANMEREGEAEEVEISKRPEDTIHKIFFDPTGNHLLACLHGGETYYLHSGTARPKRLAKWSGVVVEAVAFDAQRCTEGSTKGIVIGTRSGDLYESSLESNGK 1091
            SI+ ++V N  + +A +   V+R NL N E   E +++E+SK+PEDT++KIF DPT  H + CL   E+ YL   + +PK + K  G ++EAVA++  R  E +T+ I+IGT  G ++E+ L++  K
Sbjct:   57 SIMDLSVSNSTVIIALNSS-VMRLNLMNTE---ELDKIEVSKKPEDTVYKIFQDPTARHAIICLRSYESLYLARNSKKPKPIPKLKGHLIEAVAWNKTRLNETTTQAILIGTSKGLIFETDLDNEEK 179
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BLAST of mRNA_H-paniculata_contig4948.12131.1 vs. uniprot
Match: UPI000A2A96A1 (vacuolar protein sorting-associated protein 18 homolog n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A96A1)

HSP 1 Score: 94.4 bits (233), Expect = 3.890e-17
Identity = 66/210 (31.43%), Postives = 106/210 (50.48%), Query Frame = 3 
Query:  516 ARAGAGRSRPPLATGFGRDDVFGEPSSNLAPTTRGEPPIFSLKRMDLEGASSGRRGKFRAASSSWSILAVAVGNGNLAMATSDCCVIRWNLANMEREGEAEEVEISKRPEDTIHKIFFDPTGNHLLACLHGGETYYLHSGTARPKRLAKWSGVVVEAVAFDAQRCTEGSTKGIVIGTRSGDLYESSL-------ESNGKERPFSLVYSLD 1124
            A +G+G S  P  T    DDV    S  +   T  E PIF  + ++    S+              I+ + V N  + +A +   ++R +L N     E + VEIS+R +DTI+K+F DP   HLL C++  E YYL   + +PK L K  G ++ AV ++  + TE ST+ I++GT+ G L+E+ L       +  G ER    +Y+++
Sbjct:   11 AASGSGDSLNPFLT---PDDVEPVASGFIEVKTEDEVPIFRRQTINFRPPSN--------------IVDMVVCNNTVVVALTTNFIMRIDLLNP---SEVDPVEISRRMDDTIYKLFLDPAARHLLICMNSQELYYLARNSKKPKPLTKLRGHLINAVGWNKTKLTEASTQTILLGTKKGLLFETELVPEEKFLDLKGLERFCKQLYNVN 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4948.12131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQH0_9PHAE2.420e-8173.47Pep3_Vps18 domain-containing protein n=1 Tax=Ectoc... [more]
D8LI30_ECTSI6.820e-6981.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A836CAW5_9STRA4.370e-2940.00Pep3_Vps18 domain-containing protein n=1 Tax=Tribo... [more]
A0A7S2BMK1_9STRA2.060e-2040.66Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A7RKZ9_NEMVE1.530e-1832.77Vacuolar protein sorting-associated protein 18 hom... [more]
A0A3M6T9G8_POCDA1.200e-1734.97Vacuolar protein sorting-associated protein 18 hom... [more]
UPI0009E261021.900e-1735.10vacuolar protein sorting-associated protein 18 hom... [more]
A0A261Y872_9FUNG1.920e-1737.14Galactose-1-phosphate uridylyltransferase n=1 Tax=... [more]
A0A6S7HQQ7_PARCT2.620e-1739.37Vacuolar protein sorting-associated protein 18 hom... [more]
UPI000A2A96A13.890e-1731.43vacuolar protein sorting-associated protein 18 hom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4948contigH-paniculata_contig4948:2401..6901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.1
Seed ortholog evalue2.7e-56
Seed eggNOG ortholog2880.D8LI30
Preferred nameVPS18
KEGG koko:K11303,ko:K20181
KEGG Pathwayko04138,ko05034,map04138,map05034
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000149,GO:0000323,GO:0001667,GO:0001845,GO:0002064,GO:0002065,GO:0002066,GO:0002791,GO:0002793,GO:0003006,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005856,GO:0005884,GO:0006605,GO:0006622,GO:0006623,GO:0006725,GO:0006726,GO:0006727,GO:0006728,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006887,GO:0006897,GO:0006904,GO:0006906,GO:0006909,GO:0006914,GO:0006928,GO:0006950,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007568,GO:0007610,GO:0007632,GO:0007634,GO:0008055,GO:0008057,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008333,GO:0008340,GO:0008593,GO:0009056,GO:0009058,GO:0009267,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009790,GO:0009888,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010256,GO:0010259,GO:0010631,GO:0010646,GO:0010647,GO:0010648,GO:0010876,GO:0012505,GO:0015031,GO:0015629,GO:0015711,GO:0015718,GO:0015721,GO:0015833,GO:0015849,GO:0015850,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016477,GO:0016482,GO:0018130,GO:0019058,GO:0019438,GO:0019538,GO:0019748,GO:0019889,GO:0019905,GO:0019953,GO:0021700,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0023057,GO:0030154,GO:0030260,GO:0030674,GO:0030707,GO:0030855,GO:0030897,GO:0030903,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032879,GO:0032880,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033059,GO:0033060,GO:0033263,GO:0033365,GO:0033554,GO:0034613,GO:0034641,GO:0035542,GO:0040011,GO:0042440,GO:0042441,GO:0042558,GO:0042559,GO:0042594,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043277,GO:0043324,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044409,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044703,GO:0045022,GO:0045176,GO:0045184,GO:0045202,GO:0045746,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046718,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0046942,GO:0048066,GO:0048069,GO:0048072,GO:0048278,GO:0048284,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048585,GO:0048609,GO:0048731,GO:0048753,GO:0048757,GO:0048856,GO:0048869,GO:0048870,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050896,GO:0050931,GO:0051036,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051128,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051674,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0060034,GO:0060035,GO:0060036,GO:0060090,GO:0060429,GO:0060627,GO:0061024,GO:0061025,GO:0061356,GO:0061357,GO:0061462,GO:0061919,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070925,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0090066,GO:0090087,GO:0090130,GO:0090132,GO:0090174,GO:0090382,GO:0090385,GO:0090386,GO:0090387,GO:0090389,GO:0097352,GO:0097708,GO:0098657,GO:0098796,GO:0098927,GO:0099023,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140029,GO:0140056,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532,GO:1904951
EggNOG free text desc.notochord cell vacuolation
EggNOG OGsKOG2034@1,KOG2034@2759
EC2.3.1.48
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04131
Exons4
Model size1178
Cds size1107
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4948.12131.1prot_H-paniculata_contig4948.12131.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4948 2401..6830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930459.4943893-CDS-H-paniculata_contig4948:2400..25621622930459.4943893-CDS-H-paniculata_contig4948:2400..2562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4948 2401..2562 -
1691481301.3775253-CDS-H-paniculata_contig4948:2400..25621691481301.3775253-CDS-H-paniculata_contig4948:2400..2562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4948 2401..2562 -
1622930459.512031-CDS-H-paniculata_contig4948:3661..38581622930459.512031-CDS-H-paniculata_contig4948:3661..3858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4948 3662..3858 -
1691481301.394243-CDS-H-paniculata_contig4948:3661..38581691481301.394243-CDS-H-paniculata_contig4948:3661..3858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4948 3662..3858 -
1622930459.525588-CDS-H-paniculata_contig4948:4823..50431622930459.525588-CDS-H-paniculata_contig4948:4823..5043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4948 4824..5043 -
1691481301.4061196-CDS-H-paniculata_contig4948:4823..50431691481301.4061196-CDS-H-paniculata_contig4948:4823..5043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4948 4824..5043 -
1622930459.5379255-CDS-H-paniculata_contig4948:6302..68301622930459.5379255-CDS-H-paniculata_contig4948:6302..6830Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4948 6303..6830 -
1691481301.414138-CDS-H-paniculata_contig4948:6302..68301691481301.414138-CDS-H-paniculata_contig4948:6302..6830Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4948 6303..6830 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930459.5504808-UTR-H-paniculata_contig4948:6830..69011622930459.5504808-UTR-H-paniculata_contig4948:6830..6901Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4948 6831..6901 -
1691481301.4227393-UTR-H-paniculata_contig4948:6830..69011691481301.4227393-UTR-H-paniculata_contig4948:6830..6901Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4948 6831..6901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4948.12131.1

>prot_H-paniculata_contig4948.12131.1 ID=prot_H-paniculata_contig4948.12131.1|Name=mRNA_H-paniculata_contig4948.12131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=369bp
MDLFEEWNATEKRNSQRQQQQQQQQPRRPAGAQQFTQPGEREHRQGGNAP
LQQHRGRSSQPGGNAMGGGGGIGLPWGKRQPPQQQPAQQQSSASVTPAGA
PSNAVGNRLSAIAPAAAQPDNPFGPGTSTPFASNPFASSNPFGVGANPAR
AGAGRSRPPLATGFGRDDVFGEPSSNLAPTTRGEPPIFSLKRMDLEGASS
GRRGKFRAASSSWSILAVAVGNGNLAMATSDCCVIRWNLANMEREGEAEE
VEISKRPEDTIHKIFFDPTGNHLLACLHGGETYYLHSGTARPKRLAKWSG
VVVEAVAFDAQRCTEGSTKGIVIGTRSGDLYESSLESNGKERPFSLVYSL
DRRQQGAGAGRDGGKYES*
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mRNA from alignment at H-paniculata_contig4948:2401..6901-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4948.12131.1 ID=mRNA_H-paniculata_contig4948.12131.1|Name=mRNA_H-paniculata_contig4948.12131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4501bp|location=Sequence derived from alignment at H-paniculata_contig4948:2401..6901- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGGTGTGTACTGCGGCGTGCACTTGACTGCTCGTTCCTGGGTGCCGTG
ACTCCATACGTAGGCTAACAAATGGATCTATTCGAGGAATGGAACGCGAC
GGAAAAACGAAACTCTCAGCGGCAACAGCAACAGCAGCAACAGCAGCCAA
GACGGCCAGCCGGCGCACAACAATTTACGCAGCCAGGAGAGCGAGAACAC
CGGCAAGGGGGCAACGCACCACTGCAGCAGCACAGGGGCAGGAGTAGCCA
GCCAGGCGGAAATGCGATGGGCGGTGGGGGAGGGATAGGCTTGCCCTGGG
GAAAGCGTCAGCCACCTCAACAACAACCAGCACAGCAGCAGAGCTCTGCC
TCCGTCACACCAGCAGGAGCACCCAGCAATGCTGTGGGAAATAGACTCTC
CGCCATTGCCCCCGCTGCTGCGCAACCCGACAACCCGTTCGGGCCGGGGA
CGTCCACCCCGTTTGCGTCTAATCCATTCGCTAGCTCCAATCCTTTTGGA
GTTGGCGCAAACCCTGCGCGCGCGGGGGCAGGCAGGTCTCGGCCGCCGCT
GGCGACGGGGTTTGGGCGGGACGATGTTTTCGGAGAACCTTCGTCAAATG
TGAGATTTGTTCTGCGGTAGTTGCAGTAGGAGTACGGAGCACGTTGTGTG
TGCGCGGGTGGGGGTGGGGGTAGAGGTGAGGGTGGGTGCTTCTCTTAAAG
CTGCAGCTAGTTGTGAACTGTATTTTGTATGAAATATTTGTATTGTCTTG
TCTGCCATTGTGTGTGTGTGTGCATGTATGAGATCGTAGTATTAATAGCG
ACAATCAACGATTTCGGTCACTTTATCGGAGGACGAGATATAACACCCCC
CCTCCCACCGTCTTAAGGGAATAGGGGAACGCGGGTTGGTTCCTCACCCG
ATTGCTTCGACAATTATGAACAGGACTGAAAAAATGCTGAGAAGAGTTTC
CCCAAAGTATTTGCAGTTCGCTACTTGTGCCCTCCGCGTTGTCGAACAAG
TTGGTCTTGGGAATGCGGGCTCCGGTGTCGTCAAGGGCGGGGTGTACTCA
TGTTTTACATCCCATAGTTGCTAGACCGTGCTTCGCTGGGGGGGGGAGGT
AGAAACAGGTATCCATACATATGAAGAAAACATGACAACCGTAAAAACAT
TAAATGGATATATGCTTCAGCATCTTCAAGCTGCTGGATTACTTATCCAC
AAAATGACCAAACTAGACGTGTGAGAGAGACCACTGGCACAAATTGAGTA
AGATAGGATCACCCTTTGTCAAGTTCGGTACCAGGATTAGTTGCAACAAG
CACGAAGTCCTGTACGCGCTAATATGCCCCGCCGTTCCCGCCCCATCGCG
TGTTAGGTGGGATAGGTCTGGTCTTCGCAGTACATTTCAACGAGGCTGTT
AAGATTTCTTACGTTACGAGAACAAGGCAGTAACAGTTGTTTTTCTTTCA
CGAAACGCTGGGTGTAGACGCACCATTCTCTAATTCCTAAAACGCATGCT
CACAAGCCACCTTTCCTCCAAACATGCGTGTTTGATTTAACCCTACCGAT
TTGATGCCGTTGCCTCCGCTCAGCCCTCGGGGGTCTCGTGCACCCTCGAT
CGACCTCTCCATGGTCTGAAACCGATTTCACAACCTACGAAAATCGTCTT
TTGGTCGCAATATGTATATATACGTGAATATATATATACACATCCTATGT
TACGCTGACGGTGCACCTGTCTCTGTCAGCATTAATACACAGGAGATGTA
CCTTGTTGTCATCATTTTCTGGTGCGTTAACTGCTATCCACCCCTCCTAA
TGTCCTTCACAACATTGGCACAACCCAAACGCCAAAATGCGACCTGGGCG
CAAAGCAGCTTGCTCCCACTACGCGCGGCGAGCCTCCAATATTCTCACTT
AAGCGTATGGACTTGGAAGGCGCGTCCAGTGGCCGCAGGGGGAAATTTCG
AGCAGCATCTTCCTCGTGGTCCATCTTGGCGGTGGCGGTGGGCAACGGTA
ACTTGGCGATGGCAACGTCGGATTGCTGCGTGATTCGATGGAACCTGGCG
AACATGGAGAGGGAGGGCGAGGCTGAGGGTGAGATGAACGGGGGGGGGAG
AATCTAAGAAAGATTAAGACAGACAGACAGATAGAGATGGAGATAAGTAC
AGACAGAGAGAGAGAAAAATGAACAGTCGGGTTATACCTGACGAAGATAT
CATGGGGCCAGCTTTGCTATGACTTCTGCCATACCCCGTCCATCCGTCTT
GCGAGGTCAGGAAAAACTGATACTTCCACCAGAGTGTATATTATGACACA
GTGTCAATAGAAAGTGTAAGCGTTACTCCATGTGCTGGATGTGGAGCACG
TACTCATGCATGTAAGGAAATGTTTGTCCCTGAATTCCTCTGTTGCGGTA
TCCTACCCACAAGGTGTGTATGACGTGTTCATATAATACATACAGTATGG
TCCAAGGGCCACAAGAGGATGTGCTAGTGCTCTTTATGACTAAGGGGACG
ACGGGGTAGGGGCTTAGTATCTTCAAGTTGCTGGATTACTTGTTATTGTG
TTATTATCCACAAATTGACCAAACTTTTAGGGAGCTGGCTACCTCGTCTT
GCTGCTTGCTCTCAAGGTATCACCCCACACTAAACGCACCAATTGCTATT
TTTGTACAATCTTTCATTTCCAGAAAAAATACACGTGTTACACGAGAAGA
ATTCCTTAGCACTTTTCGATTTGAAAAAAATTGTTTTCCAAGATACCTAT
GTACAAGGCAAAGTTATGGACTTTCGAACGGTATGCTAGGTTTAGGATTT
GAATATAAAAAAATTGCAAACTTTATTACGGTGAAAGCATGAGTGGCTAG
TATCTCGTGGGATATAGTATTTGGATCGTGTATCGTATTTCAGCCCCCCC
CTAATGGTCATGATCTAATTTTCATGATGGTGATAAGTGTATATTGTGTT
CAACTATAGTTTGAGATTAGCTGCATAATTTCAACATGATTACGACGGAG
TTATAGTCATATCAACTTAAGCACCCCCCCCTGTCCCAAGTAGAGGTTGA
GATATCCAAGAGACCGGAGGACACAATCCACAAGATATTCTTCGACCCCA
CCGGTAATCACCTCCTCGCCTGCCTGCACGGAGGAGAGACATACTACTTA
CACTCCGGCACCGCAAGACCCAAGCGCCTGGCAAAGTGGTCGGGCGTGGT
CGTGGAGGCGGTGGCCTTTGACGCACAGCGTTGCACGGAGGTGAGCAAGC
AAAGGTAGCTTCTCGTTCTTCCTCTCTCTCTGGCTCTCTCTCTCTCTCTC
GCTTCCTCTCCCTCGTTCTTTCTGTTTCTTTCTCTGCCTGTCTCTGACTT
TGTCTCCATCTATGTCTATCTCTATGTCTATGTCTTTGACTTTGTCTTTG
CCTCTGTCTCTCGGTGCGGGGTTTATTGACCCCCCTTGAAATAACCCGCC
ACTATTTGGGAGATCTTTACTGAAAATAGCGGCGAGGTGAGGCGAACGCG
GCTAATCTCGAAACGGGTTTATTATTAGCCACCCCTAGGAACGCTGTGTC
TTTGTCTAACCCCCCTAAACAGCAGAGATGAAAGGTGACAAATGACAAAG
TGAGACATTACGACCAGATAGTGATGTTATTTTAATCACTACGTGCCTTC
AGTTGTGCTTATCACAGCAAACCAATCCATCGGGCGAAACTCGTCCTGTA
ACCATAAGACGCAACCTGCTTCTCCTTTTGGGGATAATGAATCAAAAGAG
TTTATAAATCCTGGCAATGGTAGAAATAAATGACGAATAATAAAAAAAAA
AAGTGTCGTTTGCTTTTTTTTTTTTTTTCCAACGACAGATATGTGACCTA
TACGAATCATGACCCATTCCCATTTTATAGGGGTTTGGTTTAAGGTTTTA
AGCAAAGTGTCAACGTGAGCAGGGGTGGGGAGTCATGCTATTCTGCTGTA
CCCGCGGATGGTATTTTTGATTGTAGCACAAACACATAGTACTGAGGGTA
TACAAGAAGTCAGCAATACTTTCGGAAACGGTTCGTTTATTGGCTTTTTC
TATTAACACGAGTGTTATTTCTGTATTCGCTTTTCCCTATGGGCATCTAC
ACATGTACTCCGAGTAGTATAACAGTATTGATATAATATTCATATAATCA
GCCACAACGTTTAGATTTTGAAAAATTAACTAGTTTTTGTTTTTTGAGCA
TGCATCCCCCCCCCCCGCTCTCCCCGCAAGTTTTTTGTGTGGTGACTTCG
GTCGATTTGTAGCGCCCTATCGATGGTTATGTTGGTGATATGTGACGTAT
GTCCTTTGTGTCTTTATTCTGTATTTTTGGTGGTTGAAGGGAAGCACGAA
GGGCATCGTGATCGGAACGCGGTCCGGCGATCTGTACGAGTCATCCCTCG
AGAGCAACGGTAAGGAGAGACCGTTCAGCTTGGTCTACAGCCTCGATCGA
CGCCAGCAAGGTGCCGGCGCCGGGCGAGATGGAGGTAAATACGAATCCTA
G
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Coding sequence (CDS) from alignment at H-paniculata_contig4948:2401..6901-

>mRNA_H-paniculata_contig4948.12131.1 ID=mRNA_H-paniculata_contig4948.12131.1|Name=mRNA_H-paniculata_contig4948.12131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2214bp|location=Sequence derived from alignment at H-paniculata_contig4948:2401..6901- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCTATTCGAGGAATGGAACGCGACGGAAAAACGAAACTCTCAGCG
GCAACAGCAACAGCAGCAACAGCAGCCAAGACGGCCAGCCGGCGCACAAC
AATTTACGCAGCCAGGAGAGCGAGAACACCGGCAAGGGGGCAACGCACCA
CTGCAGCAGCACAGGGGCAGGAGTAGCCAGCCAGGCGGAAATGCGATGGG
CGGTGGGGGAGGGATAGGCTTGCCCTGGGGAAAGCGTCAGCCACCTCAAC
AACAACCAGCACAGCAGCAGAGCTCTGCCTCCGTCACACCAGCAGGAGCA
CCCAGCAATGCTGTGGGAAATAGACTCTCCGCCATTGCCCCCGCTGCTGC
GCAACCCGACAACCCGTTCGGGCCGGGGACGTCCACCCCGTTTGCGTCTA
ATCCATTCGCTAGCTCCAATCCTTTTGGAGTTGGCGCAAACCCTGCGCGC
GCGGGGGCAGGCAGGTCTCGGCCGCCGCTGGCGACGGGGTTTGGGCGGGA
CGATGTTTTCGGAGAACCTTCGTCAAATATGGATCTATTCGAGGAATGGA
ACGCGACGGAAAAACGAAACTCTCAGCGGCAACAGCAACAGCAGCAACAG
CAGCCAAGACGGCCAGCCGGCGCACAACAATTTACGCAGCCAGGAGAGCG
AGAACACCGGCAAGGGGGCAACGCACCACTGCAGCAGCACAGGGGCAGGA
GTAGCCAGCCAGGCGGAAATGCGATGGGCGGTGGGGGAGGGATAGGCTTG
CCCTGGGGAAAGCGTCAGCCACCTCAACAACAACCAGCACAGCAGCAGAG
CTCTGCCTCCGTCACACCAGCAGGAGCACCCAGCAATGCTGTGGGAAATA
GACTCTCCGCCATTGCCCCCGCTGCTGCGCAACCCGACAACCCGTTCGGG
CCGGGGACGTCCACCCCGTTTGCGTCTAATCCATTCGCTAGCTCCAATCC
TTTTGGAGTTGGCGCAAACCCTGCGCGCGCGGGGGCAGGCAGGTCTCGGC
CGCCGCTGGCGACGGGGTTTGGGCGGGACGATGTTTTCGGAGAACCTTCG
TCAAATCTTGCTCCCACTACGCGCGGCGAGCCTCCAATATTCTCACTTAA
GCGTATGGACTTGGAAGGCGCGTCCAGTGGCCGCAGGGGGAAATTTCGAG
CAGCATCTTCCTCGTGGTCCATCTTGGCGGTGGCGGTGGGCAACGGTAAC
TTGGCGATGGCAACGTCGGATTGCTGCGTGATTCGATGGAACCTGGCGAA
CATGGAGAGGGAGGGCGAGGCTGAGGCTTGCTCCCACTACGCGCGGCGAG
CCTCCAATATTCTCACTTAAGCGTATGGACTTGGAAGGCGCGTCCAGTGG
CCGCAGGGGGAAATTTCGAGCAGCATCTTCCTCGTGGTCCATCTTGGCGG
TGGCGGTGGGCAACGGTAACTTGGCGATGGCAACGTCGGATTGCTGCGTG
ATTCGATGGAACCTGGCGAACATGGAGAGGGAGGGCGAGGCTGAGGAGGT
TGAGATATCCAAGAGACCGGAGGACACAATCCACAAGATATTCTTCGACC
CCACCGGTAATCACCTCCTCGCCTGCCTGCACGGAGGAGAGACATACTAC
TTACACTCCGGCACCGCAAGACCCAAGCGCCTGGCAAAGTGGTCGGGCGT
GGTCGTGGAGGCGGTGGCCTTTGACGCACAGCGTTGCACGGAGAGGTTGA
GATATCCAAGAGACCGGAGGACACAATCCACAAGATATTCTTCGACCCCA
CCGGTAATCACCTCCTCGCCTGCCTGCACGGAGGAGAGACATACTACTTA
CACTCCGGCACCGCAAGACCCAAGCGCCTGGCAAAGTGGTCGGGCGTGGT
CGTGGAGGCGGTGGCCTTTGACGCACAGCGTTGCACGGAGGGAAGCACGA
AGGGCATCGTGATCGGAACGCGGTCCGGCGATCTGTACGAGTCATCCCTC
GAGAGCAACGGTAAGGAGAGACCGTTCAGCTTGGTCTACAGCCTCGATCG
ACGCCAGCAAGGTGCCGGCGCCGGGCGAGATGGAGGTAAATACGAATCCT
AGGGAAGCACGAAGGGCATCGTGATCGGAACGCGGTCCGGCGATCTGTAC
GAGTCATCCCTCGAGAGCAACGGTAAGGAGAGACCGTTCAGCTTGGTCTA
CAGCCTCGATCGACGCCAGCAAGGTGCCGGCGCCGGGCGAGATGGAGGTA
AATACGAATCCTAG
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