mRNA_H-paniculata_contig49357.12117.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49357.12117.1
Unique NamemRNA_H-paniculata_contig49357.12117.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49357.12117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49357contigH-paniculata_contig49357:362..1178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size817
Cds size465
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930457.4781058-UTR-H-paniculata_contig49357:361..7131622930457.4781058-UTR-H-paniculata_contig49357:361..713Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49357 362..713 +
1691481300.5115545-UTR-H-paniculata_contig49357:361..7131691481300.5115545-UTR-H-paniculata_contig49357:361..713Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49357 362..713 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930457.4938662-CDS-H-paniculata_contig49357:713..11781622930457.4938662-CDS-H-paniculata_contig49357:713..1178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49357 714..1178 +
1691481300.5226486-CDS-H-paniculata_contig49357:713..11781691481300.5226486-CDS-H-paniculata_contig49357:713..1178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49357 714..1178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49357.12117.1prot_H-paniculata_contig49357.12117.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49357 714..1178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49357.12117.1

>prot_H-paniculata_contig49357.12117.1 ID=prot_H-paniculata_contig49357.12117.1|Name=mRNA_H-paniculata_contig49357.12117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
MRHELRCLQAKLPLCLIGSFSRGVLCCIENNHGHSLLWIELRSSEKIIIN
SARHSVSVSLFFLRRNRCSIFTRGALQWYEGLGELLKHKKYESRCSGGFS
CSPLLRCALLRVVDTFVPSEAAFACSEVGRCRLKAEGVCCKMHTRGLNPE
FQHC*
back to top

mRNA from alignment at H-paniculata_contig49357:362..1178+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49357.12117.1 ID=mRNA_H-paniculata_contig49357.12117.1|Name=mRNA_H-paniculata_contig49357.12117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=817bp|location=Sequence derived from alignment at H-paniculata_contig49357:362..1178+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGAGATGTTGTTTTGATTTTACTTAAATTTGGACTTACTGCTGGCGTTG
TGAATTGATATTCTATGAACGCAGGCTGGTCAACGAATATTGCGCTGCGG
CTGTCGGCCGGTAAGACGCGGTCAAGAATTGTGATGGTGGTAACGTTGAA
GGTTTGATAGGCGTGCTCTATTTCTGACGTATCGGAAGCTAACCCAATGG
AGTTGCCTGTTTTTCTTCAACACACAAGAACTAAGTGACATACGTAGTAT
TATTGCATGGAAGATTTGTTCCGGGTTGGCTGCAAATAATTATGTAGCTG
TTGTGAGTTGTACTGCAGTCAAGCACGAATTTTTGTAAATGTAAGATCGT
TCATGAGACATGAGCTGAGGTGTTTGCAAGCTAAGTTGCCCCTCTGCTTG
ATCGGTAGTTTTTCGCGCGGAGTGTTGTGTTGTATTGAAAATAATCATGG
ACACTCTCTACTTTGGATAGAACTGCGTTCAAGTGAGAAAATTATCATCA
ATAGCGCGCGCCATTCGGTCTCTGTTTCACTTTTTTTTTTACGAAGAAAT
AGGTGCAGCATTTTCACAAGAGGTGCGCTTCAGTGGTACGAGGGTTTGGG
CGAACTGTTGAAACACAAGAAATATGAATCTCGCTGCTCGGGAGGTTTCT
CGTGTTCTCCTTTGCTCCGGTGCGCCTTACTAAGAGTAGTTGATACCTTT
GTACCGAGCGAAGCCGCCTTCGCTTGCTCTGAGGTTGGCCGCTGCAGGCT
GAAGGCCGAGGGAGTGTGCTGTAAGATGCACACACGGGGTCTGAATCCCG
AATTTCAGCATTGCTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig49357:362..1178+

>mRNA_H-paniculata_contig49357.12117.1 ID=mRNA_H-paniculata_contig49357.12117.1|Name=mRNA_H-paniculata_contig49357.12117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig49357:362..1178+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGACATGAGCTGAGGTGTTTGCAAGCTAAGTTGCCCCTCTGCTTGAT
CGGTAGTTTTTCGCGCGGAGTGTTGTGTTGTATTGAAAATAATCATGGAC
ACTCTCTACTTTGGATAGAACTGCGTTCAAGTGAGAAAATTATCATCAAT
AGCGCGCGCCATTCGGTCTCTGTTTCACTTTTTTTTTTACGAAGAAATAG
GTGCAGCATTTTCACAAGAGGTGCGCTTCAGTGGTACGAGGGTTTGGGCG
AACTGTTGAAACACAAGAAATATGAATCTCGCTGCTCGGGAGGTTTCTCG
TGTTCTCCTTTGCTCCGGTGCGCCTTACTAAGAGTAGTTGATACCTTTGT
ACCGAGCGAAGCCGCCTTCGCTTGCTCTGAGGTTGGCCGCTGCAGGCTGA
AGGCCGAGGGAGTGTGCTGTAAGATGCACACACGGGGTCTGAATCCCGAA
TTTCAGCATTGCTGAATGAGACATGAGCTGAGGTGTTTGCAAGCTAAGTT
GCCCCTCTGCTTGATCGGTAGTTTTTCGCGCGGAGTGTTGTGTTGTATTG
AAAATAATCATGGACACTCTCTACTTTGGATAGAACTGCGTTCAAGTGAG
AAAATTATCATCAATAGCGCGCGCCATTCGGTCTCTGTTTCACTTTTTTT
TTTACGAAGAAATAGGTGCAGCATTTTCACAAGAGGTGCGCTTCAGTGGT
ACGAGGGTTTGGGCGAACTGTTGAAACACAAGAAATATGAATCTCGCTGC
TCGGGAGGTTTCTCGTGTTCTCCTTTGCTCCGGTGCGCCTTACTAAGAGT
AGTTGATACCTTTGTACCGAGCGAAGCCGCCTTCGCTTGCTCTGAGGTTG
GCCGCTGCAGGCTGAAGGCCGAGGGAGTGTGCTGTAAGATGCACACACGG
GGTCTGAATCCCGAATTTCAGCATTGCTGA
back to top