mRNA_H-paniculata_contig49308.12110.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49308.12110.1
Unique NamemRNA_H-paniculata_contig49308.12110.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49308.12110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49308contigH-paniculata_contig49308:415..878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size239
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930456.6766-CDS-H-paniculata_contig49308:414..5531622930456.6766-CDS-H-paniculata_contig49308:414..553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49308 415..553 +
1691481300.161014-CDS-H-paniculata_contig49308:414..5531691481300.161014-CDS-H-paniculata_contig49308:414..553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49308 415..553 +
1622930456.6898935-CDS-H-paniculata_contig49308:780..8781622930456.6898935-CDS-H-paniculata_contig49308:780..878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49308 781..878 +
1691481300.1725278-CDS-H-paniculata_contig49308:780..8781691481300.1725278-CDS-H-paniculata_contig49308:780..878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49308 781..878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49308.12110.1prot_H-paniculata_contig49308.12110.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49308 415..878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49308.12110.1

>prot_H-paniculata_contig49308.12110.1 ID=prot_H-paniculata_contig49308.12110.1|Name=mRNA_H-paniculata_contig49308.12110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MEVMKSWPKLMDTPDHPRKAIDSNTIAKHLLCLKASDARIKEALQYSPQG
ISYDEAVVENDNSVRLLEEDGPLAFRWDL
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mRNA from alignment at H-paniculata_contig49308:415..878+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49308.12110.1 ID=mRNA_H-paniculata_contig49308.12110.1|Name=mRNA_H-paniculata_contig49308.12110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=464bp|location=Sequence derived from alignment at H-paniculata_contig49308:415..878+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGTTATGAAGTCGTGGCCGAAGCTGATGGACACGCCTGATCACCC
CCGCAAGGCCATCGACAGCAATACCATCGCAAAGCACTTGCTGTGCCTTA
AGGCTTCCGACGCGCGCATCAAGGAAGCACTACAATACAGTAAGTTCTGC
TTTTGGTAGGTGGCATTCCCAGTAACTACCTCGTCCATTATTCCTGGCAG
GAAATTCTGTCGAGATTGGATTTCAAAGTTACTGTAAATATATCTATACC
TACCTACGTTTTGGTGCGCAAAAGTATTTTAGTGTTTGTTTCTTTGTTTC
TTGTTCGTGAAGGAATTGTTTTGGGATGTTATACCCAGTCTCGATTCGTA
TTATGTTGCGCGGCAGGTCCCCAAGGCATCTCGTACGATGAAGCCGTCGT
GGAGAACGACAACAGCGTACGACTTCTCGAGGAGGATGGGCCGTTGGCGT
TCCGTTGGGATTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig49308:415..878+

>mRNA_H-paniculata_contig49308.12110.1 ID=mRNA_H-paniculata_contig49308.12110.1|Name=mRNA_H-paniculata_contig49308.12110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig49308:415..878+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGTTATGAAGTCGTGGCCGAAGCTGATGGACACGCCTGATCACCC
CCGCAAGGCCATCGACAGCAATACCATCGCAAAGCACTTGCTGTGCCTTA
AGGCTTCCGACGCGCGCATCAAGGAAGCACTACAATACAATGGAGGTTAT
GAAGTCGTGGCCGAAGCTGATGGACACGCCTGATCACCCCCGCAAGGCCA
TCGACAGCAATACCATCGCAAAGCACTTGCTGTGCCTTAAGGCTTCCGAC
GCGCGCATCAAGGAAGCACTACAATACAGTCCCCAAGGCATCTCGTACGA
TGAAGCCGTCGTGGAGAACGACAACAGCGTACGACTTCTCGAGGAGGATG
GGCCGTTGGCGTTCCGTTGGGATTTAGTCCCCAAGGCATCTCGTACGATG
AAGCCGTCGTGGAGAACGACAACAGCGTACGACTTCTCGAGGAGGATGGG
CCGTTGGCGTTCCGTTGGGATTTA
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