mRNA_H-paniculata_contig49260.12103.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49260.12103.1
Unique NamemRNA_H-paniculata_contig49260.12103.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig49260.12103.1 vs. uniprot
Match: D8LRW8_ECTSI (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, family GT13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRW8_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 9.120e-19
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 KAPAVIIVEDDLLFSPDFLEYFEFNAPILEHDESTLVLSAWNDNGFEGLV 150
            +APAV+IVEDDLLFSPDFLEY E NAP+LE D +TLVLSAWNDNG+ G V
Sbjct:  160 QAPAVVIVEDDLLFSPDFLEYLETNAPVLERDPTTLVLSAWNDNGYAGRV 209
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BLAST of mRNA_H-paniculata_contig49260.12103.1 vs. uniprot
Match: A0A6H5JNF6_9PHAE (GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.730e-18
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 KAPAVIIVEDDLLFSPDFLEYFEFNAPILEHDESTLVLSAWNDNGFEGLV 150
            +APAV+IVEDDLLFSPDFLEY E NAP+LE D +TLVLSAWNDNG+ G V
Sbjct:  201 QAPAVVIVEDDLLFSPDFLEYLETNAPVLERDPTTLVLSAWNDNGYTGRV 250
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BLAST of mRNA_H-paniculata_contig49260.12103.1 vs. uniprot
Match: A0A7S3XJJ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJJ4_HETAK)

HSP 1 Score: 82.0 bits (201), Expect = 1.030e-17
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    4 APAVIIVEDDLLFSPDFLEYFEFNAPILEHDESTLVLSAWNDNGFEGLV 150
            APAV++VEDD  FSPDFLEYFE NAP+L+ D ST VLSAWNDNGF G V
Sbjct:   53 APAVLVVEDDFYFSPDFLEYFEANAPLLDRDASTFVLSAWNDNGFWGKV 101
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BLAST of mRNA_H-paniculata_contig49260.12103.1 vs. uniprot
Match: F0YJ59_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJ59_AURAN)

HSP 1 Score: 73.2 bits (178), Expect = 1.300e-15
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    4 APAVIIVEDDLLFSPDFLEYFEFNAPILEHDESTLVLSAWNDNGF 138
            APAV++VEDDLLF+PDFL+YF   AP LE DES  V SAWNDNGF
Sbjct:   21 APAVVVVEDDLLFAPDFLDYFGAVAPALERDESLFVASAWNDNGF 65
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BLAST of mRNA_H-paniculata_contig49260.12103.1 vs. uniprot
Match: A0A7S1WKP0_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WKP0_ALECA)

HSP 1 Score: 75.1 bits (183), Expect = 2.790e-15
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    4 APAVIIVEDDLLFSPDFLEYFEFNAPILEHDESTLVLSAWNDNGFEGLV 150
            AP VIIVEDDL+FSPDFLEYF   AP+L+ D S  V+SAWNDNGF  LV
Sbjct:   13 APGVIIVEDDLIFSPDFLEYFHAAAPLLDEDPSLWVVSAWNDNGFRYLV 61
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BLAST of mRNA_H-paniculata_contig49260.12103.1 vs. uniprot
Match: A0A7S2STA6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STA6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.510e-15
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 KAPAVIIVEDDLLFSPDFLEYFEFNAPILEHDESTLVLSAWNDNGFEGLV 150
            +APA+++VEDD  FSPDFLEYF   APILE D +T V+S+WNDNG  G V
Sbjct:   96 EAPALVVVEDDFRFSPDFLEYFRSVAPILERDPTTYVISSWNDNGLAGKV 145
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BLAST of mRNA_H-paniculata_contig49260.12103.1 vs. uniprot
Match: A0A7R9U447_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U447_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.310e-13
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    4 APAVIIVEDDLLFSPDFLEYFEFNAPILEHDESTLVLSAWNDNGF 138
            AP +IIVE+DL FSPDF EYF  + P L+HD+S ++LSAWNDNGF
Sbjct:  173 APGIIIVEEDLTFSPDFYEYFSHSVPALDHDDSIMLLSAWNDNGF 217
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BLAST of mRNA_H-paniculata_contig49260.12103.1 vs. uniprot
Match: A0A812K3G4_9DINO (GNTI protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812K3G4_9DINO)

HSP 1 Score: 72.4 bits (176), Expect = 1.360e-13
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 KAPAVIIVEDDLLFSPDFLEYFEFNAPILEHDESTLVLSAWNDNGFEGLV 150
            + P +IIVEDDL FSPDFLEYF+  AP+L+ D +  ++SAWNDNGF+ LV
Sbjct:  186 QTPGIIIVEDDLRFSPDFLEYFQAAAPVLDCDSTLWIVSAWNDNGFDHLV 235
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BLAST of mRNA_H-paniculata_contig49260.12103.1 vs. uniprot
Match: A0A812K4I4_9DINO (GNTI protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812K4I4_9DINO)

HSP 1 Score: 71.6 bits (174), Expect = 2.470e-13
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    7 PAVIIVEDDLLFSPDFLEYFEFNAPILEHDESTLVLSAWNDNGFEGLV 150
            P +IIVEDDL FSPDFLEYF+  AP+L+ D +  ++SAWNDNGF+ LV
Sbjct:  185 PGIIIVEDDLRFSPDFLEYFQAAAPVLDCDSTLWIVSAWNDNGFDHLV 232
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BLAST of mRNA_H-paniculata_contig49260.12103.1 vs. uniprot
Match: A0A813CNS4_9DINO (RPS13 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813CNS4_9DINO)

HSP 1 Score: 71.6 bits (174), Expect = 2.530e-13
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    7 PAVIIVEDDLLFSPDFLEYFEFNAPILEHDESTLVLSAWNDNGFEGLV 150
            P +IIVEDDL FSPDFLEYF+  AP+L+ D +  ++SAWNDNGF+ LV
Sbjct:  185 PGIIIVEDDLRFSPDFLEYFQAAAPVLDCDSTLWIVSAWNDNGFDHLV 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49260.12103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRW8_ECTSI9.120e-1978.00Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A6H5JNF6_9PHAE1.730e-1878.00GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A7S3XJJ4_HETAK1.030e-1775.51Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0YJ59_AURAN1.300e-1573.33Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S1WKP0_ALECA2.790e-1571.43Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S2STA6_9STRA5.510e-1564.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7R9U447_9STRA1.310e-1366.67Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A812K3G4_9DINO1.360e-1362.00GNTI protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A812K4I4_9DINO2.470e-1364.58GNTI protein (Fragment) n=1 Tax=Symbiodinium necro... [more]
A0A813CNS4_9DINO2.530e-1364.58RPS13 protein n=2 Tax=Symbiodinium TaxID=2949 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49260contigH-paniculata_contig49260:846..995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue3.5e-15
Seed eggNOG ortholog2880.D8LRW8
Preferred nameMGAT1
KEGG koko:K00726
KEGG ReactionR05983
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0001701,GO:0002252,GO:0002376,GO:0003002,GO:0003674,GO:0003824,GO:0003827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005975,GO:0006040,GO:0006047,GO:0006049,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007568,GO:0007610,GO:0007626,GO:0008150,GO:0008152,GO:0008194,GO:0008340,GO:0008344,GO:0008375,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009227,GO:0009790,GO:0009792,GO:0009987,GO:0010259,GO:0012505,GO:0016020,GO:0016021,GO:0016319,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019439,GO:0019538,GO:0030534,GO:0031090,GO:0031224,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034655,GO:0034656,GO:0035010,GO:0035282,GO:0035283,GO:0035284,GO:0036211,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046348,GO:0046483,GO:0046700,GO:0048471,GO:0048513,GO:0048731,GO:0048856,GO:0055086,GO:0060322,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576
EggNOG free text desc.alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity
EggNOG OGsKOG1413@1,KOG1413@2759
EC2.4.1.101
COG Functional cat.S
CAZyGT13
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930455.4586465-CDS-H-paniculata_contig49260:845..9951622930455.4586465-CDS-H-paniculata_contig49260:845..995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49260 846..995 -
1691481299.4474323-CDS-H-paniculata_contig49260:845..9951691481299.4474323-CDS-H-paniculata_contig49260:845..995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49260 846..995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49260.12103.1prot_H-paniculata_contig49260.12103.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49260 846..995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49260.12103.1

>prot_H-paniculata_contig49260.12103.1 ID=prot_H-paniculata_contig49260.12103.1|Name=mRNA_H-paniculata_contig49260.12103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
KAPAVIIVEDDLLFSPDFLEYFEFNAPILEHDESTLVLSAWNDNGFEGLV
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mRNA from alignment at H-paniculata_contig49260:846..995-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49260.12103.1 ID=mRNA_H-paniculata_contig49260.12103.1|Name=mRNA_H-paniculata_contig49260.12103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig49260:846..995- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCTCCGGCTGTGATCATCGTGGAAGATGACCTCTTGTTCTCCCCGGA
CTTTCTGGAGTACTTCGAGTTCAATGCCCCGATTTTGGAGCATGACGAAA
GCACGCTGGTGCTCAGCGCCTGGAACGACAATGGCTTCGAGGGGCTGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig49260:846..995-

>mRNA_H-paniculata_contig49260.12103.1 ID=mRNA_H-paniculata_contig49260.12103.1|Name=mRNA_H-paniculata_contig49260.12103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig49260:846..995- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCTCCGGCTGTGATCATCGTGGAAGATGACCTCTTGTTCTCCCCGGA
CTTTCTGGAGTACTTCGAGTTCAATGCCCCGATTTTGGAGCATGACGAAA
GCACGCTGGTGCTCAGCGCCTGGAACGACAATGGCTTCGAGGGGCTGGTA
AAGGCTCCGGCTGTGATCATCGTGGAAGATGACCTCTTGTTCTCCCCGGA
CTTTCTGGAGTACTTCGAGTTCAATGCCCCGATTTTGGAGCATGACGAAA
GCACGCTGGTGCTCAGCGCCTGGAACGACAATGGCTTCGAGGGGCTGGTA
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