mRNA_H-paniculata_contig49191.12092.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49191.12092.1
Unique NamemRNA_H-paniculata_contig49191.12092.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A8F0F724_9PHAE (Ribosomal protein L19 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F724_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 2.020e-63
Identity = 106/133 (79.70%), Postives = 116/133 (87.22%), Query Frame = 1
Query:    4 NNMNS-KITLEKDYISNKADFILSVEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSEKESRLKPRFIK 399
            NN+N  K+  +     +K+DFI S+EKLYLK QVS +QIGDLVKIGV IKEGNKDRIQYYQGLI+GKN  GINLTITVRKVFQGIGVERKFLIHSPKFESI+ILKSSRVRRSKLYYLR FSEK SRLKPRF+K
Sbjct:   41 NNINGYKVHTKNSKEKHKSDFISSIEKLYLKNQVSKIQIGDLVKIGVYIKEGNKDRIQYYQGLIIGKNNAGINLTITVRKVFQGIGVERKFLIHSPKFESIEILKSSRVRRSKLYYLRKFSEKGSRLKPRFVK 173          
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A2I4Q2C7_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C7_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 7.730e-50
Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1
Query:   34 KDYISNKADFILSVEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSEKESRLKPRFI 396
            K +  N    I SVEKLY K  + ++ +GD VKIG+SIKEGNKDRIQYYQG+++ K  TGINL I VRK FQGIGVER+FL+HSPKF+S+Q+LKS+R+RRSKLYYLRN S K SRLK +FI
Sbjct:    9 KQFSKNYKTLIDSVEKLYCKNDIKMVLVGDTVKIGISIKEGNKDRIQYYQGIVISKKNTGINLKIVVRKTFQGIGVERQFLLHSPKFQSVQVLKSARIRRSKLYYLRNISGKASRLKQKFI 129          
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A0R6LUN6_UNDPI (50S ribosomal protein L19, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUN6_UNDPI)

HSP 1 Score: 160 bits (405), Expect = 2.270e-48
Identity = 82/115 (71.30%), Postives = 98/115 (85.22%), Query Frame = 1
Query:   49 NKADFILSVEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSEKESRLKPRF 393
            N  + I SVE +++K+ +S + +GD VKIGV IKEGNK+RIQYYQG+ILGKN +GINLTI+VRKVFQGIGVER FLIHSPKFESI+++KSSRVRRSKLYYLR+   K SRLK RF
Sbjct:   11 NDKELIDSVESVHIKKNLSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGINLTISVRKVFQGIGVERNFLIHSPKFESIEVIKSSRVRRSKLYYLRSIVGKGSRLKQRF 125          
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A8F0F7M0_9PHAE (Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7M0_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 2.410e-48
Identity = 81/107 (75.70%), Postives = 94/107 (87.85%), Query Frame = 1
Query:   73 VEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSEKESRLKPRF 393
            VE  Y+K+ VS + +GD VKIGV IKEGNK+RIQYYQG+ILGKN +G+NLTI+VRKVFQGIGVER+FLIHSPKFESI+I+KSSRVRRSKLYYLR+   K SRLK RF
Sbjct:   21 VESTYIKKDVSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGVNLTISVRKVFQGIGVERRFLIHSPKFESIEIIKSSRVRRSKLYYLRSIVGKGSRLKQRF 127          
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A8F0JYX3_9PHAE (Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYX3_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.390e-47
Identity = 78/108 (72.22%), Postives = 93/108 (86.11%), Query Frame = 1
Query:   70 SVEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSEKESRLKPRF 393
            SVE  Y K+ +S + +GD +K+GV IKEGNK+R+QYYQG+ILGKN +GINLTI+VRKVFQGIGVERKFL+HSPK ESI+++KSSRVRRSKLYYLRN   K SRLK RF
Sbjct:   20 SVESAYKKKNLSQIFVGDTIKVGVFIKEGNKERVQYYQGIILGKNNSGINLTISVRKVFQGIGVERKFLVHSPKLESIEVIKSSRVRRSKLYYLRNIIGKGSRLKQRF 127          
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A6B9TNS0_SARFS (50S ribosomal protein L19, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A6B9TNS0_SARFS)

HSP 1 Score: 150 bits (380), Expect = 1.630e-44
Identity = 81/130 (62.31%), Postives = 101/130 (77.69%), Query Frame = 1
Query:    7 NMNSKITLEKDYISNKADFILSVEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSE-KESRLKPRF 393
            N+N K   EK    +K   +  VE+ Y+K+ +  + +GD VKIGV IKEGNK+RIQYYQG+IL K  +GINLTI+VRK+FQGIG+ERKFLIHSPKFES+Q++KS+RVRRSKLYYLR  +  K SRLK RF
Sbjct:    3 NLNLK---EKVLYLSKKKILALVEQTYIKKSIPKVFVGDTVKIGVLIKEGNKERIQYYQGIILSKTNSGINLTISVRKIFQGIGIERKFLIHSPKFESLQVIKSARVRRSKLYYLRKTTTTKGSRLKQRF 129          
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A8F0FAK4_9PHAE (Ribosomal protein L19 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAK4_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 2.180e-44
Identity = 78/115 (67.83%), Postives = 91/115 (79.13%), Query Frame = 1
Query:   49 NKADFILSVEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSEKESRLKPRF 393
            N    I  VE+   K+ +  + +GD VKIG+ IKEGNK+RIQYYQG+ILGK  +GINL I+VRKVFQGIGVER FLIHSPKFESI ++KSSRVRRSKLYYLRN   K+SRLK RF
Sbjct:   13 NSEKIINLVEEAQKKKDIPKIFVGDTVKIGILIKEGNKERIQYYQGIILGKKNSGINLMISVRKVFQGIGVERNFLIHSPKFESITVIKSSRVRRSKLYYLRNIIGKKSRLKERF 127          
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A141BSB2_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Sargassum horneri TaxID=74089 RepID=A0A141BSB2_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 2.460e-44
Identity = 82/132 (62.12%), Postives = 102/132 (77.27%), Query Frame = 1
Query:    1 NNNMNSKITLEKDYISNKADFILSVEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSE-KESRLKPRF 393
            N N+N K   EK    +K   +  VE+ Y+K+ +  + +GD VKIGV IKEGNK+RIQYYQG+IL K  +GINLTI+VRK+FQGIG+ERKFLIHSPKFES++I+KS+RVRRSKLYYLR  +  K SRLK RF
Sbjct:    3 NLNLNLK---EKVLSLSKKKILALVEQTYIKKNIPKVFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGIERKFLIHSPKFESVEIIKSARVRRSKLYYLRKTTTTKGSRLKQRF 131          
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A2R4QPR9_9PHAE (50S ribosomal protein L19 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPR9_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 7.210e-43
Identity = 77/108 (71.30%), Postives = 90/108 (83.33%), Query Frame = 1
Query:   73 VEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSE-KESRLKPRF 393
            VE+ Y K+  + + +GD VKIGV IKEGNK+R+QYYQG+IL K  +GINLTI VRKVFQGIGVERKFLIHSPKFESI+I+KS+RVRRSKLYYLR  +  K SRLK RF
Sbjct:   20 VEENYKKKNTANLFVGDTVKIGVLIKEGNKERVQYYQGIILAKKNSGINLTIYVRKVFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKITTTKGSRLKQRF 127          
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A1I9LVW4_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVW4_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.150e-41
Identity = 72/122 (59.02%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   34 KDYISNKADFILSVEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSEKESRLKPRFIK 399
            K +I+N+  FI SVEK+++K+ +  + +GD VK+GV ++EGNK+R+Q+Y+G+IL K+ + IN TI+VRKVFQGIGVER FL++SPKF SI+++KSSR+RRSKLYYLRN   K  RLK RF K
Sbjct:   18 KIFINNR--FIESVEKVHIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGVERAFLVNSPKFASIEVIKSSRIRRSKLYYLRNIIGKAGRLKERFKK 137          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F724_9PHAE2.020e-6379.70Ribosomal protein L19 n=1 Tax=Protohalopteris sp. ... [more]
A0A2I4Q2C7_9PHAE7.730e-5066.1250S ribosomal protein L19, chloroplastic n=1 Tax=D... [more]
A0A0R6LUN6_UNDPI2.270e-4871.3050S ribosomal protein L19, chloroplastic n=25 Tax=... [more]
A0A8F0F7M0_9PHAE2.410e-4875.70Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2... [more]
A0A8F0JYX3_9PHAE1.390e-4772.22Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxI... [more]
A0A6B9TNS0_SARFS1.630e-4462.3150S ribosomal protein L19, chloroplastic n=13 Tax=... [more]
A0A8F0FAK4_9PHAE2.180e-4467.83Ribosomal protein L19 n=1 Tax=Desmarestia aculeata... [more]
A0A141BSB2_9PHAE2.460e-4462.1250S ribosomal protein L19, chloroplastic n=1 Tax=S... [more]
A0A2R4QPR9_9PHAE7.210e-4371.3050S ribosomal protein L19 n=3 Tax=Fucaceae TaxID=3... [more]
A0A1I9LVW4_9PHAE2.150e-4159.0250S ribosomal protein L19, chloroplastic n=1 Tax=P... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49191contigH-paniculata_contig49191:360..761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue1.8e-31
Seed eggNOG ortholog2880.D1J767
Preferred namerpl19
KEGG koko:K02884
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0335@1,KOG1698@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size402
Cds size393
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930453.7050295-CDS-H-paniculata_contig49191:359..7521622930453.7050295-CDS-H-paniculata_contig49191:359..752Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49191 360..752 -
1691481298.6957164-CDS-H-paniculata_contig49191:359..7521691481298.6957164-CDS-H-paniculata_contig49191:359..752Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49191 360..752 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930453.7307763-UTR-H-paniculata_contig49191:752..7611622930453.7307763-UTR-H-paniculata_contig49191:752..761Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49191 753..761 -
1691481298.7114093-UTR-H-paniculata_contig49191:752..7611691481298.7114093-UTR-H-paniculata_contig49191:752..761Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49191 753..761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49191.12092.1prot_H-paniculata_contig49191.12092.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49191 360..752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49191.12092.1

>prot_H-paniculata_contig49191.12092.1 ID=prot_H-paniculata_contig49191.12092.1|Name=mRNA_H-paniculata_contig49191.12092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MNSKITLEKDYISNKADFILSVEKLYLKEQVSLMQIGDLVKIGVSIKEGN
KDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQI
LKSSRVRRSKLYYLRNFSEKESRLKPRFIK*
back to top

mRNA from alignment at H-paniculata_contig49191:360..761-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49191.12092.1 ID=mRNA_H-paniculata_contig49191.12092.1|Name=mRNA_H-paniculata_contig49191.12092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=402bp|location=Sequence derived from alignment at H-paniculata_contig49191:360..761- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATAATAATATGAATTCAAAAATTACTTTAGAAAAAGATTATATATCTAA TAAAGCAGATTTTATTTTGTCTGTTGAAAAATTATATCTTAAAGAGCAGG TTTCTCTAATGCAGATTGGTGATCTCGTGAAAATTGGCGTATCTATTAAA GAAGGAAATAAAGATAGAATACAATATTATCAAGGGTTAATACTGGGAAA AAATGGGACGGGTATTAATTTAACAATTACAGTTAGGAAAGTTTTTCAAG GAATTGGTGTAGAGCGTAAATTTTTAATCCATTCACCAAAATTTGAATCA ATTCAAATACTAAAATCTTCACGTGTTCGAAGATCGAAATTATATTATTT AAGAAATTTTTCAGAGAAAGAAAGCCGTTTAAAACCTCGTTTTATAAAAT AA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig49191:360..761-

>mRNA_H-paniculata_contig49191.12092.1 ID=mRNA_H-paniculata_contig49191.12092.1|Name=mRNA_H-paniculata_contig49191.12092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig49191:360..761- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATTCAAAAATTACTTTAGAAAAAGATTATATATCTAATAAAGCAGA
TTTTATTTTGTCTGTTGAAAAATTATATCTTAAAGAGCAGGTTTCTCTAA
TGCAGATTGGTGATCTCGTGAAAATTGGCGTATCTATTAAAGAAGGAAAT
AAAGATAGAATACAATATTATCAAGGGTTAATACTGGGAAAAAATGGGAC
GGGTATTAATTTAACAATTACAGTTAGGAAAGTTTTTCAAGGAATTGGTG
TAGAGCGTAAATTTTTAATCCATTCACCAAAATTTGAATCAATTCAAATA
CTAAAATCTTCACGTGTTCGAAGATCGAAATTATATTATTTAAGAAATTT
TTCAGAGAAAGAAAGCCGTTTAAAACCTCGTTTTATAAAATAAATGAATT
CAAAAATTACTTTAGAAAAAGATTATATATCTAATAAAGCAGATTTTATT
TTGTCTGTTGAAAAATTATATCTTAAAGAGCAGGTTTCTCTAATGCAGAT
TGGTGATCTCGTGAAAATTGGCGTATCTATTAAAGAAGGAAATAAAGATA
GAATACAATATTATCAAGGGTTAATACTGGGAAAAAATGGGACGGGTATT
AATTTAACAATTACAGTTAGGAAAGTTTTTCAAGGAATTGGTGTAGAGCG
TAAATTTTTAATCCATTCACCAAAATTTGAATCAATTCAAATACTAAAAT
CTTCACGTGTTCGAAGATCGAAATTATATTATTTAAGAAATTTTTCAGAG
AAAGAAAGCCGTTTAAAACCTCGTTTTATAAAATAA
back to top