mRNA_H-paniculata_contig4910.12079.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4910.12079.1
Unique NamemRNA_H-paniculata_contig4910.12079.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4910.12079.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 7.600e-18
Identity = 59/126 (46.83%), Postives = 73/126 (57.94%), Query Frame = 1 
Query:    1 ITGQGESRLQRLLELWGDGRARVRACAVRSLSALAGGIIVADGSHYAAAAPTAPGSSGMASTMSMIDRCGGLLRRCFRGILFESDDNVRAHTAQLWKRLLPELQKID-NPSATYAALAKACLEHLF 375
                GE RL RLL+LW D RA VRACAVRSL ALA GI+   G+        + G S  A+T     RC  LL RCF+ +L E DD VR H+A+LW  LL  L + D +  A +A+L  +CL  LF
Sbjct:  582 FLSSGERRLNRLLDLWEDVRAGVRACAVRSLLALAQGIV---GATRPVTKTQSVGESAAAAT-----RCERLLLRCFQALLSERDDGVREHSARLWSELLKGLGRADGHRRAAHASLMASCLGILF 699
[Close]
BLAST of mRNA_H-paniculata_contig4910.12079.1 vs. uniprot
Match: A0A6H5J7D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D4_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.520e-17
Identity = 61/136 (44.85%), Postives = 76/136 (55.88%), Query Frame = 1 
Query:    1 ITGQGESRLQRLLELWGDGRARVRACAVRSLSALAGGIIVADGSHYAAAAPTAPGSSGMASTMSMIDRCGGLLRRCFRGILFESDDNVRAHTAQLWKRLLPELQKID-NPSATYAALAKACLEHLFDTDPTAAAPT 405
                GE RL RLL+LW D RA VRACAVRSL ALA GI+   G+    A   + G S  A++      C  LL RCF+ +L E DD VR H+A+LW  LL  L + D +  A +A+L  +CL  LF    T   PT
Sbjct:  204 FLSSGERRLNRLLDLWEDVRAGVRACAVRSLLALAQGIV---GATRPVAKTQSAGESAAATS------CERLLLRCFQALLSERDDGVREHSARLWSELLKGLGRADGHRGAAHASLMASCLGVLFTPPATRPPPT 330
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4910.12079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBB5_ECTSI7.600e-1846.83Essential abundant protein involved in regulation ... [more]
A0A6H5J7D4_9PHAE1.520e-1744.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4910contigH-paniculata_contig4910:11452..12518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue4.2e-16
Seed eggNOG ortholog2880.D8LBB5
KEGG koko:K15192
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsKOG0392@1,KOG0392@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Exons3
Model size592
Cds size591
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4910.12079.1prot_H-paniculata_contig4910.12079.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4910 11453..12518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930452.476689-CDS-H-paniculata_contig4910:11452..117291622930452.476689-CDS-H-paniculata_contig4910:11452..11729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4910 11453..11729 -
1691481298.045794-CDS-H-paniculata_contig4910:11452..117291691481298.045794-CDS-H-paniculata_contig4910:11452..11729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4910 11453..11729 -
1622930452.4928446-CDS-H-paniculata_contig4910:12077..122631622930452.4928446-CDS-H-paniculata_contig4910:12077..12263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4910 12078..12263 -
1691481298.0664132-CDS-H-paniculata_contig4910:12077..122631691481298.0664132-CDS-H-paniculata_contig4910:12077..12263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4910 12078..12263 -
1622930452.5095131-CDS-H-paniculata_contig4910:12390..125181622930452.5095131-CDS-H-paniculata_contig4910:12390..12518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4910 12391..12518 -
1691481298.078083-CDS-H-paniculata_contig4910:12390..125181691481298.078083-CDS-H-paniculata_contig4910:12390..12518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4910 12391..12518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4910.12079.1

>prot_H-paniculata_contig4910.12079.1 ID=prot_H-paniculata_contig4910.12079.1|Name=mRNA_H-paniculata_contig4910.12079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
ITGQGESRLQRLLELWGDGRARVRACAVRSLSALAGGIIVADGSHYAAAA
PTAPGSSGMASTMSMIDRCGGLLRRCFRGILFESDDNVRAHTAQLWKRLL
PELQKIDNPSATYAALAKACLEHLFDTDPTAAAPTDDPPTGPQPRPSSST
AHPSVSLTPQSPTTTAEKAKASTARSSRTPPVAAATAAMTPPPPRKR
back to top

mRNA from alignment at H-paniculata_contig4910:11452..12518-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4910.12079.1 ID=mRNA_H-paniculata_contig4910.12079.1|Name=mRNA_H-paniculata_contig4910.12079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1067bp|location=Sequence derived from alignment at H-paniculata_contig4910:11452..12518- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCACGGGCCAAGGAGAGAGTAGGTTGCAGCGCCTGCTGGAGCTGTGGGG
GGATGGGCGGGCGCGTGTGCGGGCCTGCGCAGTGCGGTCGTTGTCGGCTC
TAGCAGGGGGCATTATTGTAGCTGATGGGTAAGTCGGCGTCGTTTTGGTT
GTTGTTGTTGTTGTTGACGTGGTGGCAACTCTCGTCGAAAATTCAATTGT
GCGAAACCAAATCTTGGCGTTCGTTTATCCGTCCATCCCATTGTTTTTGA
CTTAGATCCCACTACGCGGCAGCAGCCCCAACAGCGCCAGGATCGTCAGG
GATGGCTTCGACAATGAGCATGATCGATCGGTGCGGGGGGTTGCTACGGC
GGTGCTTTCGCGGGATACTATTCGAAAGCGACGACAACGTTAGGGCGCAT
ACCGCTCAGCTTTGGAAACGTCTCCTACCAGAACTGCAGAAGTGAGAGTC
AGGGGCTAGGCTGAGGTTGACTGATTTCGAATCGACGTTGTATTGTCCGG
ACAGCACGTGGTCACTTTGAATGTTTACGATAACAAAATAATCTCGACAT
GAGCATGAAAATGCGACACGAACGCACCTATTTTACCAGTAGAACCAGCG
TTATCATATGCAGCCAGACTGCGACAAAATTCCCCACTCAAATTGCTGTG
TTATCACCGGTACTGTAACGTTGATGAATATATGTCATTTGGAATGCAAA
AAAAACCACCCCCTATCCCCTCCGCGCGCCCACCCCTTGGTCTCATGTCC
ACTGTTCGCCCTTGCTTCTTGCTTCGACCGCTCTAGCAGAATCGACAACC
CCTCCGCCACCTACGCCGCCCTCGCGAAAGCTTGCCTCGAACATTTGTTC
GACACCGACCCCACTGCCGCCGCCCCGACCGACGACCCTCCTACCGGCCC
TCAGCCCCGACCCTCCTCCTCCACCGCCCACCCTTCGGTTTCACTCACAC
CCCAATCTCCCACTACCACGGCTGAGAAAGCCAAAGCGAGCACCGCTCGT
TCTTCTCGCACCCCGCCGGTGGCGGCGGCAACGGCGGCGATGACGCCCCC
CCCCCCCCGAAAGCGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4910:11452..12518-

>mRNA_H-paniculata_contig4910.12079.1 ID=mRNA_H-paniculata_contig4910.12079.1|Name=mRNA_H-paniculata_contig4910.12079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig4910:11452..12518- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCACGGGCCAAGGAGAGAGTAGGTTGCAGCGCCTGCTGGAGCTGTGGGG
GGATGGGCGGGCGCGTGTGCGGGCCTGCGCAGTGCGGTCGTTGTCGGCTC
TAGCAGGGGGCATTATTGTAGCTGATGGATCACGGGCCAAGGAGAGAGTA
GGTTGCAGCGCCTGCTGGAGCTGTGGGGGGATGGGCGGGCGCGTGTGCGG
GCCTGCGCAGTGCGGTCGTTGTCGGCTCTAGCAGGGGGCATTATTGTAGC
TGATGGATCCCACTACGCGGCAGCAGCCCCAACAGCGCCAGGATCGTCAG
GGATGGCTTCGACAATGAGCATGATCGATCGGTGCGGGGGGTTGCTACGG
CGGTGCTTTCGCGGGATACTATTCGAAAGCGACGACAACGTTAGGGCGCA
TACCGCTCAGCTTTGGAAACGTCTCCTACCAGAACTGCAGAAATCCCACT
ACGCGGCAGCAGCCCCAACAGCGCCAGGATCGTCAGGGATGGCTTCGACA
ATGAGCATGATCGATCGGTGCGGGGGGTTGCTACGGCGGTGCTTTCGCGG
GATACTATTCGAAAGCGACGACAACGTTAGGGCGCATACCGCTCAGCTTT
GGAAACGTCTCCTACCAGAACTGCAGAAAATCGACAACCCCTCCGCCACC
TACGCCGCCCTCGCGAAAGCTTGCCTCGAACATTTGTTCGACACCGACCC
CACTGCCGCCGCCCCGACCGACGACCCTCCTACCGGCCCTCAGCCCCGAC
CCTCCTCCTCCACCGCCCACCCTTCGGTTTCACTCACACCCCAATCTCCC
ACTACCACGGCTGAGAAAGCCAAAGCGAGCACCGCTCGTTCTTCTCGCAC
CCCGCCGGTGGCGGCGGCAACGGCGGCGATGACGCCCCCCCCCCCCCGAA
AGCGCAATCGACAACCCCTCCGCCACCTACGCCGCCCTCGCGAAAGCTTG
CCTCGAACATTTGTTCGACACCGACCCCACTGCCGCCGCCCCGACCGACG
ACCCTCCTACCGGCCCTCAGCCCCGACCCTCCTCCTCCACCGCCCACCCT
TCGGTTTCACTCACACCCCAATCTCCCACTACCACGGCTGAGAAAGCCAA
AGCGAGCACCGCTCGTTCTTCTCGCACCCCGCCGGTGGCGGCGGCAACGG
CGGCGATGACGCCCCCCCCCCCCCGAAAGCGC
back to top