mRNA_H-paniculata_contig4909.12075.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4909.12075.1
Unique NamemRNA_H-paniculata_contig4909.12075.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4909.12075.1 vs. uniprot
Match: D7FTY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY1_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 6.480e-10
Identity = 44/92 (47.83%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:   22 RPNSGVKKVNKFFLFNTVVGLKSHNRREEEEDCWRQHRLQEQQHQQRRETEGLDLRNLINQRRS-----GRRGAVGSASVNSREFWAEMKLR 282
            R  SG   VNK FL NTV GLKSHN+REEEEDCWRQH L++      R  E L   +    RR+     G   A  ++ V++R FWAE K R
Sbjct:    8 RGGSGRAGVNKNFLLNTVHGLKSHNKREEEEDCWRQHGLEQ------RARERLLAHDANRNRRNVPADGGDTSASHASDVDARRFWAERKER 93
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BLAST of mRNA_H-paniculata_contig4909.12075.1 vs. uniprot
Match: A0A6H5KLX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX3_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.050e-7
Identity = 39/85 (45.88%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:   46 VNKFFLFNTVVGLKSHNRREEEEDCWRQHRLQEQQHQQRRETEGLDLRNLINQRRS-----GRRGAVGSASVNSREFWAEMKLRA 285
            VNK FL NTV GL+SHN+REEEEDCWRQ+ L++      R  E L   +    R+      G   A  ++ V++R FWAE K RA
Sbjct:   27 VNKNFLLNTVHGLQSHNKREEEEDCWRQYGLEQ------RARERLLAHDANRNRQKFPADGGDTSASHASDVDARRFWAERKERA 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4909.12075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTY1_ECTSI6.480e-1047.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLX3_9PHAE2.050e-745.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4909contigH-paniculata_contig4909:7040..7525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_002810.1
Exons1
Model size486
Cds size486
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930451.9912028-CDS-H-paniculata_contig4909:7039..75251622930451.9912028-CDS-H-paniculata_contig4909:7039..7525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4909 7040..7525 -
1691481297.8195825-CDS-H-paniculata_contig4909:7039..75251691481297.8195825-CDS-H-paniculata_contig4909:7039..7525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4909 7040..7525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4909.12075.1prot_H-paniculata_contig4909.12075.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4909 7040..7525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4909.12075.1

>prot_H-paniculata_contig4909.12075.1 ID=prot_H-paniculata_contig4909.12075.1|Name=mRNA_H-paniculata_contig4909.12075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
MRTSVGKRPNSGVKKVNKFFLFNTVVGLKSHNRREEEEDCWRQHRLQEQQ
HQQRRETEGLDLRNLINQRRSGRRGAVGSASVNSREFWAEMKLRARASNS
DSAGGTTQARRLSSHDKSCNDVDVGAARNIAKGDKPVSQVGGNKKTRHKR
ARETRDSGDEDN
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mRNA from alignment at H-paniculata_contig4909:7040..7525-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4909.12075.1 ID=mRNA_H-paniculata_contig4909.12075.1|Name=mRNA_H-paniculata_contig4909.12075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at H-paniculata_contig4909:7040..7525- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAACGTCGGTGGGCAAACGCCCAAATTCAGGTGTGAAAAAGGTGAA
CAAGTTTTTTTTGTTTAATACTGTTGTAGGCCTCAAGAGTCACAACCGAA
GAGAAGAGGAGGAGGACTGCTGGAGACAACATCGCTTGCAGGAACAACAA
CACCAACAACGCAGAGAGACTGAAGGCTTAGACTTGAGGAATCTCATCAA
TCAAAGGCGAAGCGGGCGTCGTGGTGCTGTCGGTTCCGCTTCAGTCAATT
CTCGGGAGTTCTGGGCTGAGATGAAGCTGAGGGCTAGGGCGTCGAACAGC
GATAGTGCTGGTGGTACGACTCAAGCACGCCGGTTATCGTCACATGACAA
GAGCTGTAACGATGTTGATGTTGGTGCGGCAAGGAACATAGCAAAGGGGG
ATAAGCCCGTGAGTCAGGTTGGCGGGAACAAAAAGACTAGGCACAAACGT
GCACGTGAAACCCGCGATAGTGGAGATGAGGATAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig4909:7040..7525-

>mRNA_H-paniculata_contig4909.12075.1 ID=mRNA_H-paniculata_contig4909.12075.1|Name=mRNA_H-paniculata_contig4909.12075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig4909:7040..7525- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAACGTCGGTGGGCAAACGCCCAAATTCAGGTGTGAAAAAGGTGAA
CAAGTTTTTTTTGTTTAATACTGTTGTAGGCCTCAAGAGTCACAACCGAA
GAGAAGAGGAGGAGGACTGCTGGAGACAACATCGCTTGCAGGAACAACAA
CACCAACAACGCAGAGAGACTGAAGGCTTAGACTTGAGGAATCTCATCAA
TCAAAGGCGAAGCGGGCGTCGTGGTGCTGTCGGTTCCGCTTCAGTCAATT
CTCGGGAGTTCTGGGCTGAGATGAAGCTGAGGGCTAGGGCGTCGAACAGC
GATAGTGCTGGTGGTACGACTCAAGCACGCCGGTTATCGTCACATGACAA
GAGCTGTAACGATGTTGATGTTGGTGCGGCAAGGAACATAGCAAAGGGGG
ATAAGCCCGTGAGTCAGGTTGGCGGGAACAAAAAGACTAGGCACAAACGT
GCACGTGAAACCCGCGATAGTGGAGATGAGGATAATATGCGAACGTCGGT
GGGCAAACGCCCAAATTCAGGTGTGAAAAAGGTGAACAAGTTTTTTTTGT
TTAATACTGTTGTAGGCCTCAAGAGTCACAACCGAAGAGAAGAGGAGGAG
GACTGCTGGAGACAACATCGCTTGCAGGAACAACAACACCAACAACGCAG
AGAGACTGAAGGCTTAGACTTGAGGAATCTCATCAATCAAAGGCGAAGCG
GGCGTCGTGGTGCTGTCGGTTCCGCTTCAGTCAATTCTCGGGAGTTCTGG
GCTGAGATGAAGCTGAGGGCTAGGGCGTCGAACAGCGATAGTGCTGGTGG
TACGACTCAAGCACGCCGGTTATCGTCACATGACAAGAGCTGTAACGATG
TTGATGTTGGTGCGGCAAGGAACATAGCAAAGGGGGATAAGCCCGTGAGT
CAGGTTGGCGGGAACAAAAAGACTAGGCACAAACGTGCACGTGAAACCCG
CGATAGTGGAGATGAGGATAAT
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