mRNA_H-paniculata_contig4907.12072.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4907.12072.1
Unique NamemRNA_H-paniculata_contig4907.12072.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4907.12072.1 vs. uniprot
Match: D8LNZ5_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNZ5_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.170e-10
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 3 
Query:  123 VRVAVRVRPLLSFEKTERLGECVSCVANSTQLLVGDG 233
            VRVAVRVRPLLSFEKTERLGEC+SC+  S QL VGDG
Sbjct:    7 VRVAVRVRPLLSFEKTERLGECLSCIPQSKQLCVGDG 43
[Close]
BLAST of mRNA_H-paniculata_contig4907.12072.1 vs. uniprot
Match: A0A6H5KW93_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW93_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.200e-10
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 3 
Query:  123 VRVAVRVRPLLSFEKTERLGECVSCVANSTQLLVGDG 233
            VRVAVRVRPLLSFEKTERLGEC+SC+  S QL VGDG
Sbjct:    7 VRVAVRVRPLLSFEKTERLGECLSCIPQSKQLCVGDG 43
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4907.12072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNZ5_ECTSI1.170e-1083.78Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KW93_9PHAE1.200e-1083.78Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4907contigH-paniculata_contig4907:4284..4516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog2880.D8LNZ5
KEGG koko:K10395
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0244@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons1
Model size234
Cds size162
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930451.6957653-UTR-H-paniculata_contig4907:4283..43541622930451.6957653-UTR-H-paniculata_contig4907:4283..4354Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4907 4284..4354 +
1691481297.6898167-UTR-H-paniculata_contig4907:4283..43541691481297.6898167-UTR-H-paniculata_contig4907:4283..4354Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4907 4284..4354 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930451.7164183-CDS-H-paniculata_contig4907:4354..45161622930451.7164183-CDS-H-paniculata_contig4907:4354..4516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4907 4355..4516 +
1691481297.706367-CDS-H-paniculata_contig4907:4354..45161691481297.706367-CDS-H-paniculata_contig4907:4354..4516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4907 4355..4516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4907.12072.1prot_H-paniculata_contig4907.12072.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4907 4355..4516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4907.12072.1

>prot_H-paniculata_contig4907.12072.1 ID=prot_H-paniculata_contig4907.12072.1|Name=mRNA_H-paniculata_contig4907.12072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
MSPPGALAASAAAAGCSVRVAVRVRPLLSFEKTERLGECVSCVANSTQLL
VGDG
back to top

mRNA from alignment at H-paniculata_contig4907:4284..4516+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4907.12072.1 ID=mRNA_H-paniculata_contig4907.12072.1|Name=mRNA_H-paniculata_contig4907.12072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=233bp|location=Sequence derived from alignment at H-paniculata_contig4907:4284..4516+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAAACATAATATAGTAAGTAAGTAGTGACCCCCTACAGACAAGGGCAC
AATAGGGCGAACAAAGCAGAGATGTCTCCGCCGGGAGCCCTCGCGGCGTC
GGCCGCCGCTGCTGGATGCAGCGTGCGCGTTGCCGTCCGAGTGCGCCCAC
TACTGAGCTTTGAGAAGACGGAGAGGTTGGGCGAGTGCGTTAGCTGCGTC
GCTAACTCGACACAGCTGCTTGTGGGAGATGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4907:4284..4516+

>mRNA_H-paniculata_contig4907.12072.1 ID=mRNA_H-paniculata_contig4907.12072.1|Name=mRNA_H-paniculata_contig4907.12072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig4907:4284..4516+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTCCGCCGGGAGCCCTCGCGGCGTCGGCCGCCGCTGCTGGATGCAG
CGTGCGCGTTGCCGTCCGAGTGCGCCCACTACTGAGCTTTGAGAAGACGG
AGAGGTTGGGCGAGTGCGTTAGCTGCGTCGCTAACTCGACACAGCTGCTT
GTGGGAGATGGGATGTCTCCGCCGGGAGCCCTCGCGGCGTCGGCCGCCGC
TGCTGGATGCAGCGTGCGCGTTGCCGTCCGAGTGCGCCCACTACTGAGCT
TTGAGAAGACGGAGAGGTTGGGCGAGTGCGTTAGCTGCGTCGCTAACTCG
ACACAGCTGCTTGTGGGAGATGGG
back to top