mRNA_H-paniculata_contig4901.12061.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4901.12061.1
Unique NamemRNA_H-paniculata_contig4901.12061.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4901.12061.1 vs. uniprot
Match: A0A835ZGC3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.460e-5
Identity = 46/192 (23.96%), Postives = 87/192 (45.31%), Query Frame = 3 
Query:   75 HQTNMATSSSGTIMRGVGLNIRCNADVSWVLERADRRWGGRLTPKSLKFYQSPCLWYAGHAVVLSSEGFKIYGKYKHAAKSYTEVAVPGMLKWLE----DESATPLAMDCLVRLRT----GKCWEA----GTASDTFMSNPWLMYRGFEDVQKEMRRDYMTYRTKTNPNDEMLSGEQHSGVLKRFCADLWER 614
            H T   ++++ T      L     A V W L+     +  + + ++LK +Q+  + YA  AV+ S        + ++A +SYT VA+PG LKWL     D   + +  + + +L+T    GK  +A      A  TF+ +   ++  + +  K ++  Y+       P+  + SG+Q   +L+     LW +
Sbjct:  153 HTTTQRSTTTMTSNTVESLGFTITAGVEWALKML---YAQKASAETLKIFQTVPIAYAASAVLHSGRTLAQKQRNEYAYRSYTNVAMPGFLKWLSEAANDNPPSWITREIMQQLQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPLFASVFPSG-VPSGQQEGDILETLRCALWAK 340
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4901.12061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZGC3_9STRA2.460e-523.96Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4901contigH-paniculata_contig4901:4..6521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size627
Cds size540
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4901.12061.1prot_H-paniculata_contig4901.12061.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4901 4..1997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930449.9758112-CDS-H-paniculata_contig4901:3..1001622930449.9758112-CDS-H-paniculata_contig4901:3..100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4901 4..100 -
1691481296.945524-CDS-H-paniculata_contig4901:3..1001691481296.945524-CDS-H-paniculata_contig4901:3..100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4901 4..100 -
1622930449.9931824-CDS-H-paniculata_contig4901:1033..11371622930449.9931824-CDS-H-paniculata_contig4901:1033..1137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4901 1034..1137 -
1691481296.9600909-CDS-H-paniculata_contig4901:1033..11371691481296.9600909-CDS-H-paniculata_contig4901:1033..1137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4901 1034..1137 -
1622930450.0150037-CDS-H-paniculata_contig4901:1658..19971622930450.0150037-CDS-H-paniculata_contig4901:1658..1997Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4901 1659..1997 -
1691481296.9699874-CDS-H-paniculata_contig4901:1658..19971691481296.9699874-CDS-H-paniculata_contig4901:1658..1997Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4901 1659..1997 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930450.0370991-UTR-H-paniculata_contig4901:1997..20241622930450.0370991-UTR-H-paniculata_contig4901:1997..2024Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4901 1998..2024 -
1691481296.9781833-UTR-H-paniculata_contig4901:1997..20241691481296.9781833-UTR-H-paniculata_contig4901:1997..2024Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4901 1998..2024 -
1622930450.0582697-UTR-H-paniculata_contig4901:6462..65211622930450.0582697-UTR-H-paniculata_contig4901:6462..6521Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4901 6463..6521 -
1691481296.986124-UTR-H-paniculata_contig4901:6462..65211691481296.986124-UTR-H-paniculata_contig4901:6462..6521Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4901 6463..6521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4901.12061.1

>prot_H-paniculata_contig4901.12061.1 ID=prot_H-paniculata_contig4901.12061.1|Name=mRNA_H-paniculata_contig4901.12061.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
MATSSSGTIMRGVGLNIRCNADVSWVLERADRRWGGRLTPKSLKFYQSPC
LWYAGHAVVLSSEGFKIYGKYKHAAKSYTEVAVPGMLKWLEDESATPLAM
DCLVRLRTGKCWEAGTASDTFMSNPWLMYRGFEDVQKEMRRDYMTYRTKT
NPNDEMLSGEQHSGVLKRFCADLWERLEIE
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mRNA from alignment at H-paniculata_contig4901:4..6521-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4901.12061.1 ID=mRNA_H-paniculata_contig4901.12061.1|Name=mRNA_H-paniculata_contig4901.12061.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6518bp|location=Sequence derived from alignment at H-paniculata_contig4901:4..6521- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTATGGCGGAGCATCAAACAGTAGTCGATTATTACATTCTGATGTTCT
CTGAATCAGGTGAGATGAATGTTCGTCAGGAATGTTGCTGGTCACCAACA
ACAAACAACAAACGCACGTTTCACAGAATTCAAACTGCAACCAATATGTA
TACAAACTTGGATGACAGCCTTGTGACATCTGCTATTCAGCAGTGACACA
TACCGTACATCACCGACTCTCTTTATTCAGCTCCCGACGTTGCAGTAACT
TGACATGAGTTTACGGTAATCCCTTCACCTTCAGAGTCGACCATAAATGA
CAGAAACGGTCTCGTCTTTTTCGGACTAAATCGTGTGTACGAGCTGGGCC
AACCGAGAAACTAATCTAACGGTTTTGAGGCTGTGCCTCCATCAACAATT
TAACGAATTTTGCAGTGAAACGTCGACATCATGTTCTTCACTAACTTCCC
GACACATGAAACGCCTGTCATTTTCTTTTCTTTTCTTATCGAAAATTGTG
GGCTATGCAAAGATTCGAGAAAATCCAGAGCCGGCCGTAACTGCCTGAAA
AGAAAAAAAATGAACGATGTTGAATAATTTTTTACAAACGTGCCGCATAT
GGAGTTAAAATTTCAGGTCAAAATTCGCAAAACTGTGCGGGGTATCGCAG
ATTGTTGTAGGGCCCCTGTGGGACGTACCGACTGGGCGCAATTTTTTGGC
TGTTCTTCCCCCACAAAGAAGCAGGCTACCGCATTACAAGTACGTGCAAA
CGAGTGAAAGAAGATGTAACATGTACAGCACGGCAGCTGCCAAATGAATA
ATAACATTAGATCTCCAGCGCCACCACTACTAGTTGACCCTCCGAAGCGA
ACCACCACTCTACTCGTACGTCGTACTCATCCGGTGACATAATATCGAAC
ACCACACTCGGTAGGCCTGCCCATGCATTTCTATCCATTGTCCGCCCCTC
CCTATCACCGGTGCTCACGATATGAATCGTGCGACTACTGGTACAGGTTA
TTCTCCTACTCGTACTTCGTGTCGATTAAGCCAGGCTCCATGTCAAGGAT
GTTGCGGTGAGCCTCGCACTTCTTCTTCATCTTCTCGATCATATCTTTGG
ACTTGATTTCGTCATCCACATGTGGACTGTGGACAAGGAGATGGGTATGT
TCAAGCCGTACTTCTCCAATCGCAAGTTCCCCCCTTCCCCAGCGAAAAGC
TCGTGATTGATATACTGGTGAGCCTTGCTACACGATACGCGCTTCTGGCT
TTTGAGCCACCCTAACATATCGAACTCAAGATATTCCTCGAACAGGATCC
ACTCCCTCTCGTGTACACCTCGGCCCTCGTGTTTCAAACGTCCGCCGAGT
TTCCGAAACTCACGGTTCCACGAGAGAATCGTACTCGGCTTGTAATTCAC
CTCCGCGACTTCCGCGACTTCCGCGGCCATCGCCAGCATCGTGAACCTGA
GACGAATGAGCGAAGCTTCGTTCATGTGGTTCCACACCTTTTCGTCTACC
TTTTCCCGGATGAACTGCGTCGCGGTGACCGCCAAGGCATCGACGGCTTG
CTTCGCAGCTTCGAGCTCGCCGAGAGAGAGTAAATCCCTATCGCGTTCAC
GCTCCAACACCTGATTGATGGCGAATGCCTGAATGCGCAACCTATCCCTC
TGGGTCGCGCTGATCTGCGGCGGCGGCAGCGGCGGCGAGACCTCACCCGC
AAAGCGTCCGTTGGCCTCCGCTTCCTCTACAAAACCATCGTCGTCGGCTT
GTAGCAGCTTGGTGACGTCTCCCATTATTGCCTTTCGAAGCCGGAAGATC
AGGTTCGCGTTTCTCTGCGCTCTCTTTTTCAGTTCGGCGATCGAACTTCT
TGTGACCACTTTCTCCTGGTGCCTCGTCCACACACGCGTGAGGCACCGCA
TCTCTCGATCGTTCACGAGCATCGACGCCATCCAATCCGCACGTGTCACA
TTAGCCCCTTCCCTGCGTTGTTTCTTGAACGCCCTCTCCTGAGAGGCGCT
CAGTCGATGCAAGCTGTGGTGAGACTTCCCTATTGTATAAAGGAAGAAAC
AGGGAGGACGGCGCGTACAGCAGTCAAGACATGCACAAACAGCATTCGTG
TCGTAGTAGCAGCACTGCATGTACGTGCATACAGCAGTACAGCAGTACAA
ACAACAGTGCAAACAGTGCAAATGAAAACAGACAGCCTCAACAACAGCAA
GATAACAGCAGTAGAACCTGATGGAACTCGCGTTCGGGTAACCTGGCAGC
TGCCGAACCTGCTATTGACGCGGAGCTCGAGCTGCGCTGTTGATCTGAAG
GAGGGGAATAGTCAACTTGCGTACCCTTGCACCCCTGCTCCCAATTCATT
CGCCACCACTCTTTGGTTGCCTTTGCGTCCTCCTGGGTGTCGAAAAGCTT
CGATTGCTTCACCTGTGTCGTCTTCTTTGTACTATGCGTTTAGTTCAATT
TCAACCTCCACTTCCCCCTTTGCCGATCGAAATTGATCCTCGGGGCAGAG
GTCTTCCGCCAACGCACGGTACCGTGCGAGCTTGGAGCCATGTCGCAGCT
TGTGCGTTGTGTAAGGCTCCCAACAGCTGCAGTGCTGCAGCTCAAAATTT
GAAAATATTTGATCCCACCGCTAAAAATTGACAAACTGACGGTTTTAGCC
GCCATTTTAATGTACACACAAACCTGTACATTCATGGATGGTCGAAGGAC
ACGACAGTTTTGTTTGTAAATCCCTACCAACATCGCACTGCCACCTGGCC
TGCTCATAGACGATGATTTATCGATTACAGGAGTACTTTCCATATTTTAA
AATTTACTGTAGATAGAAAGTTACGACCGAATGAAACTAAGTGAGTTTCT
TGGCTGGTCCAGCTTGTAGGAATAATATATTTCGGACAGCGGTATCAGCA
TGCCGCAAAACAAACAAGAGCCTCCCTCGGGGGAGGATATATACCGCTTG
GCACCTTTCCTAAACTACCTAAAAAATTGTCAGCCCCTAAACGCCGTTCC
TTCTCTTTTTATTGTTGTCACAAGCGCGGGCTTCATCATACGCGTGCCTC
TCCAACCGTTGCTGCCCGGTTGAACACTACCCCGATGAGACAGCTTGGCT
TTCAACCGTTGTAGTCGAGCCAATAATCGATTTTGTCCGATTTCTCAACT
GTTTCAGCCGTAGTCACAACCGATTTAGTCCGACATAGATACATTGCGAA
GGTCCGCCTGACCGCTCAACCATGAATTTACCGATCGACTGTCGGTGCAC
CGAACTACCCGTAAGTAGTCAGGACAGGAGAACCACGCAAAGTTTTTTTT
TCAGGAGCATATGCACGACTCTATTCGCTATCTAATGGTTGTTGTATTCT
AGATATGCATGCGCACATCGTTGTTGATCTCTTTTTGGCAAAATGTCATC
GTACCAAATCTAAATTCAAAACTGAGCCCAGTTCTGAGTGCCTAGTTTTT
AGTTTCTTCTTGAAAAAACAAACAAACGCTCGCGATGGGAACAACTGGGC
GATCAAAACTTGGCCCAGTTTTGAGTTCTGGTCGCCATACTGGAGCGTGT
TTTTGATCGATCTTCCTAGGGCGCCCAAAACTCAAAACTCGTTGTACAAA
AATAGCGTCCACGCGCCACAACTACTACACCAGAGCTGCAAGGTCAAGCC
ATTACAGGTGTAGAGAGGGGTTGTACTCGTGGTCACCATTCAGCATCGTA
CGATATATTGTTTTTCCACGGTACGAACTATGCCGTGCTCACTGTTCGTA
TTGCACTGTCTGTACTTTGCAGTGACTTTGCCGTACTGTGCTGACTGCAT
GTACTGACGGCACATATATACGGTATATAGCATTGTATTGCATTACTCTT
CGGAAAACGTACTTGTAATATCTGTGGTTTTCACACCTTGGCAGGGGTAT
GTGCCGGGACCGTGGTGCTTCACGCTGGCAGATAGATAATGAAGTCGAAA
TACCATTTGAGAACCTGTACTGGTGGGTGATGCTTCCCGTGAGATGACGT
ACTCAAGTCTACACTGAAGCGTACCCCATTCAGCGCCCGTTGCTCTCTTT
TTGGAAGTCGTTAGGTGGCTAAGCGTAAACGATTGGTCTCTTTTTCTTCT
TTCAGAACTGGCGTACGAACCCCCCACCCCGGCCAACACCGCCTCATGCA
AACCCCCAGTTTTGCGTTTAGGTTCATAACGGCAGTTTTGTCACACAAAA
TGGATCTATAGTTGGTCTCCAAAACTGGGCCCATTTTTGAGTTTTGATTG
ATTGCATAATATTTGGGCTTAGGCCAACTCTTGTGGGACCCAATGTTTTA
CCCAAGTTTTGGGAAAGTTGAAAAAATTGGGCGGCGAAATATTGTGTGTG
TGTCACGGCTTATGGCCACGCCCTATTTTTCATAGTTTTCGTAGAGAACG
CATGGCGTGCATCTCTTGTAGTTTGAAAATTCAAACTACCAAGCGTGTTG
TGTGCACAACAGCACAAACGTTTCACGAGGTGCCAACAAATCTCCAGGTG
CCAACTCGTCTCCATCAGACTAATATGGCGACGTCATCGAGCGGCACGAT
CATGAGGGGCGTTGGCCTCAACATTCGCTGCAATGCAGACGTGTCCTGGG
TGCTCGAGCGAGCCGACAGGCGCTGGGGAGGGCGTCTCACGCCCAAAAGT
CTCAAATTCTACCAAAGCCCGTGCCTATGGTACGCCGGCCACGCTGTCGT
CTTGAGTTCCGAAGGATTCAAGATATATGGCAAGTATAAGCATGCCGCAA
AGTCTTACACCGAGGTTGCAGTGCCGGGCATGCTGAAGTGGTTGGAGGAT
GAATCGGCCACGCCACTCGCGATGGACTGTCTTGTCAGACTACGGACCGG
AAAGTGCTGGGAGGTGAGCGTTAGAACCGTAACACTACTTGGAAGAGTTC
TACGGGACATTTCGTGGCGCTTTGTAGTGTTGAGGAGACAACCTCAGTAT
GGGCGACCTCGTGAGAAACCTTTGTTGTTGCCTATTTCACTGTCGCTCTC
GTTTCTGAAGACTATATTCTTTTCAGTCTGTAGACTGCCAAAATATGGAA
TAATGGCCTTGATTTTGGACGATCCTTTCTTTTCGAGGAAAGCAAAACAA
CAATCCAACAGGATCAACCCGCACATGATGTACGATTAGCAATAGAAGAC
GATGTGCTTTAGTAGAGTGTTCCTTGTTGGCCTGCTCGCTTCTGCCTTGG
ACTGGTATCGCTTCACAGAACAGCTGGTGCGCTCCAACCCATAGCGCTGT
AGTATGACACTACGAAGCTACGGTGCACTGTACAACAGTACAATTGTGCT
TAATTCTTAACACCTACCGTGCATTGCAATAGCTTAGCAGTAACTTAGCA
GCCTTTGCGCTTCGCGTCTACCCTGTGCGTGCAGGCAGGGACGGCTTCCG
ACACGTTCATGTCAAATCCCTGGTTGATGTATCGAGGCTTCGAGGACGTC
CAGAAGGAAATGAGGAGGGATTACATGACGTACCGGACGTGAGTGGATGG
GATGAGTTGTGGAATGCCATGAAAGATTTCAGTCAGTGTAAAACGAAATA
TGAACGACGCATTCCGAAGGACAAACGAAGCGTCGGGCAACTTCTTACGG
CACCACTTGTGGCAAGAAGCGATATTTACCCGGCAGCATACGCCATGATT
CATCCACTGCCACCGGCATAATGTGTCAATAACGACCAGGATATTCGGTC
TGCTGCTGTACTGCTGTACTGCTGCTGTGAGCGAGCACGCTGTGGGGCTG
TCTGTTGTATGCGAAGGGACTATCTATATCACAAATGCCAGTACATGAAT
CATGCTCCGCCATTCCAAAAAATCAAATCCGTTCCAAAATGCGCGTTAAA
TTATTGGCAAAAGTAGAAGGCCGTGAGGTTCGATTTTGGGGTCGTGCGAT
TGAAAAACATCGAAGGCAAAACCTCCCACAAGAAGTGGTTTCTAGTAATA
GATAATTGATTTTTTCAAAAATCTAAAATCAAGCTGAAGAATCCAATTGC
CACAAGAAACGGCGTCAACACAATCGGAAAACGCAACTTTCTCTTGATGC
GCAACGTGCTTCAACGCGTGCCGCGTCAGCAACAAGGCAGCGCAGGGTAG
CACAGTCAGATCAGGCACAGTATTGACCCCAAAGAGACGCACAGGGTAGG
ATCCGGCACGGTAGTACCGTCCGCGAAAATATGTGGTAGCGCGTACCGCC
GGGAAACATTCCACGGCCAATACCGACGGTGTTGCGCAGTAGCTGCATAC
CGCACGAAATTAAGCCCCTTGATGAACGTCGTTGTGACTGCAGAATTGGA
CTCGTCGCGAGGTAGAATTCGCTACTGCACGGGAGAAATCGAGAGGGCAA
GTGAGCAGCACGGAAACGATGATTTTCTCCCTCGCTCTTTTGCCAATACC
TTTAATGTCTTCGTCCCACAGGAAGACAAACCCGAACGACGAGATGCTGT
CCGGGGAACAGCATAGCGGTGTTCTTAAACGCTTCTGCGCAGACCTGTGG
GAGCGATTGGAGATCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4901:4..6521-

>mRNA_H-paniculata_contig4901.12061.1 ID=mRNA_H-paniculata_contig4901.12061.1|Name=mRNA_H-paniculata_contig4901.12061.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig4901:4..6521- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACGTCATCGAGCGGCACGATCATGAGGGGCGTTGGCCTCAACAT
TCGCTGCAATGCAGACGTGTCCTGGGTGCTCGAGCGAGCCGACAGGCGCT
GGGGAGGGCGTCTCACGCCCAAAAGTCTCAAATTCTACCAAAGCCCGTGC
CTATGGTACGCCGGCCACGCTGTCGTCTTGAGTTCCGAAGGATTCAAGAT
ATATGGCAAGTATAAGCATGCCGCAAAGTCTTACACCGAGGTTGCAGTGC
CGGGCATGCTGAAGTGGTTGGAGGATGAATCGGCCACGCCACTCGCGATG
GACTGTCTTGTCAGACTACGGACCGGAAAGTGCTGGGAGATGGCGACGTC
ATCGAGCGGCACGATCATGAGGGGCGTTGGCCTCAACATTCGCTGCAATG
CAGACGTGTCCTGGGTGCTCGAGCGAGCCGACAGGCGCTGGGGAGGGCGT
CTCACGCCCAAAAGTCTCAAATTCTACCAAAGCCCGTGCCTATGGTACGC
CGGCCACGCTGTCGTCTTGAGTTCCGAAGGATTCAAGATATATGGCAAGT
ATAAGCATGCCGCAAAGTCTTACACCGAGGTTGCAGTGCCGGGCATGCTG
AAGTGGTTGGAGGATGAATCGGCCACGCCACTCGCGATGGACTGTCTTGT
CAGACTACGGACCGGAAAGTGCTGGGAGGCAGGGACGGCTTCCGACACGT
TCATGTCAAATCCCTGGTTGATGTATCGAGGCTTCGAGGACGTCCAGAAG
GAAATGAGGAGGGATTACATGACGTACCGGACGCAGGGACGGCTTCCGAC
ACGTTCATGTCAAATCCCTGGTTGATGTATCGAGGCTTCGAGGACGTCCA
GAAGGAAATGAGGAGGGATTACATGACGTACCGGACGAAGACAAACCCGA
ACGACGAGATGCTGTCCGGGGAACAGCATAGCGGTGTTCTTAAACGCTTC
TGCGCAGACCTGTGGGAGCGATTGGAGATCGAGGAAGACAAACCCGAACG
ACGAGATGCTGTCCGGGGAACAGCATAGCGGTGTTCTTAAACGCTTCTGC
GCAGACCTGTGGGAGCGATTGGAGATCGAG
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