mRNA_H-paniculata_contig490.12060.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig490.12060.1
Unique NamemRNA_H-paniculata_contig490.12060.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig490.12060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig490contigH-paniculata_contig490:30249..31325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930448.2678504-CDS-H-paniculata_contig490:30249..303461622930448.2678504-CDS-H-paniculata_contig490:30249..30346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig490 30250..30346 -
1691481296.7285044-CDS-H-paniculata_contig490:30249..303461691481296.7285044-CDS-H-paniculata_contig490:30249..30346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig490 30250..30346 -
1622930448.2876399-CDS-H-paniculata_contig490:31155..313251622930448.2876399-CDS-H-paniculata_contig490:31155..31325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig490 31156..31325 -
1691481296.7385945-CDS-H-paniculata_contig490:31155..313251691481296.7385945-CDS-H-paniculata_contig490:31155..31325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig490 31156..31325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig490.12060.1prot_H-paniculata_contig490.12060.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig490 30250..31325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig490.12060.1

>prot_H-paniculata_contig490.12060.1 ID=prot_H-paniculata_contig490.12060.1|Name=mRNA_H-paniculata_contig490.12060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
EHIVSLRRREKRTVKKSMKFALLACTALFAAPSFAFIVPSSSSAALASSA
RVTPHSRASVSVTSGSSQVVRMAAAGYKVGIVGATGAVG
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mRNA from alignment at H-paniculata_contig490:30249..31325-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig490.12060.1 ID=mRNA_H-paniculata_contig490.12060.1|Name=mRNA_H-paniculata_contig490.12060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1077bp|location=Sequence derived from alignment at H-paniculata_contig490:30249..31325- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACATATAGTTAGTCTTCGACGGAGGGAAAAACGTACTGTGAAGAAAAG
CATGAAGTTTGCCCTCCTTGCTTGCACAGCGTTATTTGCTGCGCCATCTT
TTGCCTTCATTGTGCCTTCTAGTTCCTCTGCCGCTCTCGCCTCTTCCGCT
AGAGTCACTCCTCACAGCAGGTAAGCCTAAGCGATAGCACCAAAGTTTAA
ACATGCCTGTACACCATGTACAAGGTAAGAAGTCCAACACTACAGTATCT
ATATATGGTACAAACTCGAAAACGTTTTGGACCGCAGATAATGCAGTTGC
GTCTGGTTGGTGCGTGAGCCCGTACTTTTGCCTTGTGGGCCCACAGTTAT
TATTCCACGATGGAGATTTAATGTGAAGTCGTACTACAGACAGCGAATGT
CGAGATCGTACATGAAAGAGGATGAGGTTCATGAGCGACGAGGAAATATG
AAGGACAGCAACAAGGCCGTTCTCCGCCTCTCTGTGTACTAAACTGCACT
GTTACAGTCAGTATAGAGCACGAAAGAAAGCTCTCCCGAAAAGCGTTGGC
GAACACGGCCAACATAACATGTAGCTGCCATCAGCCTTACCCCAAATGTC
ATTTGTTGAGTTTTGATGCCTTTCCCCATGTCCTCTTCATCGTGAAACAA
ATGAGTTGACGTCGTCGTGACTGCGCGGGTCAACTATTCATTGGTCGAAA
GGATGAAGTAGAAAGCATGACCAACGAGAACAAATTTGGTCAGGGGACGG
GTCGCGAATTGCAGTAAAAGTGGAGATTTCAACGGGCTTAATTTAACCAA
GCTGAATTCGTTGCTTACCTTTCCCCCAGTTTGTCAGTACAACAATACCG
GCTGTTATCTCGCTCCCAACATCCCAAGAACCTTTCAACCTCTCATTTTA
ATGCTCATCGATTGTTCTAATTTCGCTCATGAGTGTACGCAACCTCCCGG
CCCCCTCCCGCCACCCCACCCTTTCTAAGGGCTTCCGTTTCCGTAACAAG
CGGAAGCTCGCAAGTAGTGAGAATGGCTGCGGCAGGATACAAAGTGGGCA
TTGTGGGGGCTACGGGGGCGGTGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig490:30249..31325-

>mRNA_H-paniculata_contig490.12060.1 ID=mRNA_H-paniculata_contig490.12060.1|Name=mRNA_H-paniculata_contig490.12060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig490:30249..31325- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACATATAGTTAGTCTTCGACGGAGGGAAAAACGTACTGTGAAGAAAAG
CATGAAGTTTGCCCTCCTTGCTTGCACAGCGTTATTTGCTGCGCCATCTT
TTGCCTTCATTGTGCCTTCTAGTTCCTCTGCCGCTCTCGCCTCTTCCGCT
AGAGTCACTCCTCACAGCAGGAACATATAGTTAGTCTTCGACGGAGGGAA
AAACGTACTGTGAAGAAAAGCATGAAGTTTGCCCTCCTTGCTTGCACAGC
GTTATTTGCTGCGCCATCTTTTGCCTTCATTGTGCCTTCTAGTTCCTCTG
CCGCTCTCGCCTCTTCCGCTAGAGTCACTCCTCACAGCAGGGCTTCCGTT
TCCGTAACAAGCGGAAGCTCGCAAGTAGTGAGAATGGCTGCGGCAGGATA
CAAAGTGGGCATTGTGGGGGCTACGGGGGCGGTGGGGGGCTTCCGTTTCC
GTAACAAGCGGAAGCTCGCAAGTAGTGAGAATGGCTGCGGCAGGATACAA
AGTGGGCATTGTGGGGGCTACGGGGGCGGTGGGG
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