mRNA_H-paniculata_contig49.12056.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig49.12056.1 vs. uniprot
Match: D7G8U9_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U9_ECTSI) HSP 1 Score: 456 bits (1172), Expect = 3.500e-139 Identity = 477/684 (69.74%), Postives = 515/684 (75.29%), Query Frame = 1
Query: 19 LSKAAKLLEEDKKKVGSIRSFLLNFLEERDCSVKKRLDLHVHQTETGRPVTDGIVQEVCKLRPDMIGLSLRQCMEVTDVGLWCIARHTLLLRELNVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV-----------ALRALCSMNAQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQKRFMAQLCHSMKLSEPAQDFFGFQPRKNAKELLARAEAENLKIRAAVIVQARMRGRVARVRMNIVKKNWIIKTRLARIQAMIRGYFARKWYRTWQAQVRKHRSAAAIQATWRMLGDRRTAERLRAEKLAREMGQELATRIQAGWWGYRGRVRMREIRAVRARRLLLEARAQASRELSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRREAATLIQSVAMMRMGRAVLQKLKTTRDWKILEWEMALRVQKAWHGKKARVIVLALRILRQNMLEYAAATTMQSFWRAVRARHLTEIQRAMFKIRQMQ 2037
LSK+AKLLEED+KKV SIRSFLLNFLE RDCS+KKRLDL+VHQTETGRPVTD +VQEVCKLRP+MIGLSLR C+EVTDVG+WCIARHT LRELNVG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ALRALCSMNAQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX I +RFMA+LCHSMKLSEPAQ FFGFQPRKNAKELLA+ EA N +I AA++VQ+ MRGR+AR R +IV++NWIIKTRLA QA+IRGYF RKWYR W+AQVR+ R+AAAIQATWRMLGDRRT ERLR EKL RE GQ LATRIQAGWWGYRGRVRM E+RA+RARRLLLEAR QA REL+ XXX IQS+A MR GRAVL LK RD KILEWEMAL+VQ AW G+ A+++V+ +RILR+ + AAA T+QSFWRAVRARHL IQRA+FKIRQMQ
Sbjct: 142 LSKSAKLLEEDRKKVASIRSFLLNFLEGRDCSIKKRLDLYVHQTETGRPVTDAVVQEVCKLRPEMIGLSLRNCIEVTDVGMWCIARHTTALRELNVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGDRALIQLGRSCHQLTGLDAFGCSHAQVWLLHVGVITLDPGLLSVARGCPKLEKLMLTGCGGITGKSVRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALRALCSMNAQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGRRFMAELCHSMKLSEPAQAFFGFQPRKNAKELLAKKEATNRRIIAAIVVQSLMRGRLARGRSSIVRRNWIIKTRLAIAQAIIRGYFVRKWYRAWRAQVREQRAAAAIQATWRMLGDRRTTERLRREKLFRERGQSLATRIQAGWWGYRGRVRMVEVRAIRARRLLLEARTQARRELAAIVIQSNLRRLFAQKELLELRRLRDEALERXXXXXXXXXXIQSLARMRQGRAVLAALKARRDLKILEWEMALKVQAAWRGRVAKMMVMTMRILREQARQNAAAITIQSFWRAVRARHLATIQRALFKIRQMQ 825
BLAST of mRNA_H-paniculata_contig49.12056.1 vs. uniprot
Match: A0A6H5KKL6_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL6_9PHAE) HSP 1 Score: 259 bits (663), Expect = 1.160e-69 Identity = 471/689 (68.36%), Postives = 502/689 (72.86%), Query Frame = 1
Query: 19 LSKAAKLLEEDKKKVGSIRSFLLNFLEERDCSVKKRLDLHVHQTETGRPVTDGIVQEVCKLRPDMIGLSLRQCMEVTDVGLWCIARHTLLLRELNVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVALRALCSMNAQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQKRFMAQLCHSMKLSEPAQDFFGFQP--RKNAKELLARAEAENLKIRAAVIVQARMRGRVARVRMNIVKKNWIIKTRLARIQAMIRGYFARKWYRTWQAQVRKHRSAAAIQATWRMLGDRRTAERLRAEKLAREMGQELATRIQAGWWGYRGR----VRMREIRAVRARRLLLEARAQASRELSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRE-----AATLIQSVAMMRMGRAVLQKLKTTRDWKILEWEMALRVQKAWHGKKARVIVLALRILRQNMLEYAAATTMQSFWRAVRARHLTEIQRAMFKIRQMQGGAVK 2052
LSK+AKLLEED+KKV SIRSFLLNFLEERDCS+KKRL VTDVG+WCIARHT LRELNVGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ALRALCSMNA FLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +RFMA+LCHSMKLSEPAQ FFGFQ R+N+ G VA W I+ R +A+IRGYFARKWYR W+AQVR+ R+AAAIQATWRMLGDRRT ERLR EKL RE GQ LATRIQAGWWGYR +R V + +L A A + RE AA L+QS+A MR GRAVL LK RD KILEWEMAL+VQ AW G+ A+++V+ +RILR+ + AAA T+QSFWRAVRARHL IQRA+FKIRQMQ GA K
Sbjct: 144 LSKSAKLLEEDRKKVASIRSFLLNFLEERDCSIKKRL--------------------------------------VTDVGMWCIARHTTALRELNVGGCHGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALRALCSMNAHFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRFMAELCHSMKLSEPAQAFFGFQADTRRNS-------------------------GTVADAG---APCPWAIQHRS---KAIIRGYFARKWYRAWRAQVREQRAAAAIQATWRMLGDRRTTERLRREKLFRERGQSLATRIQAGWWGYRSSAPEVIRWDSKHIVLSLLILFAEVASACKRSGLYEPGDYFWRLEHRRLFAQKELLELRRLRNEALAREKRNQAAALLVQSLARMRQGRAVLAALKARRDLKILEWEMALKVQAAWRGRVAKMMVMTMRILREQARQKAAAITIQSFWRAVRARHLATIQRALFKIRQMQDGASK 763
BLAST of mRNA_H-paniculata_contig49.12056.1 vs. uniprot
Match: A0A836CGM1_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGM1_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.070e-15 Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 1
Query: 67 SIRSFLLNFLEERDCSVKKRLDLHVHQTETGRPVTDGIVQEVCKLRPDMIGLSLRQCMEVTDVGLWCIARH 279
++RSF+LNFLE+RD S+KKRLDL +HQ E+GR VTD +VQEV + P + GL+LR C +TD LW +ARH
Sbjct: 95 TVRSFMLNFLEDRDGSIKKRLDLGLHQVESGRAVTDAVVQEVARACPQLRGLALRGCAALTDAALWAVARH 165
BLAST of mRNA_H-paniculata_contig49.12056.1 vs. uniprot
Match: A0A7S1XL41_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XL41_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 2.110e-15 Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1
Query: 67 SIRSFLLNFLEERDCSVKKRLDLHVHQTETGRPVTDGIVQEVCKLRPDMIGLSLRQCMEVTDVGLWCIAR 276
++RSFLLNFL E D SV+ +DL +H ETG+P+T+ IVQE+CK++PDM L+LR C V DVGLW IAR
Sbjct: 152 TLRSFLLNFLTEEDGSVRDDIDLDLHSRETGQPITNAIVQEICKMKPDMKKLNLRDCQLVNDVGLWAIAR 221
BLAST of mRNA_H-paniculata_contig49.12056.1 vs. uniprot
Match: A0A2R5GKS2_9STRA (F-box/LRR-repeat protein 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GKS2_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 5.040e-9 Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 1
Query: 67 SIRSFLLNFLEERDCSVKKRLDLHVHQTETGRPVTDGIVQEVCKLRPDMIGLSLRQCMEVTDVGLWCIARHTLLLRELNV 306
++RSFL NFL++ + +K LDL H E+G PVTD +QE+ L P + + C E+TDVGLW +AR L E+N+
Sbjct: 96 ALRSFLSNFLKDDMGTFRKHLDLAKHAKESGLPVTDATLQEIADLHPCVESIQAAACNEITDVGLWALARSCETLLEINL 175 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49.12056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig49.12056.1 >prot_H-paniculata_contig49.12056.1 ID=prot_H-paniculata_contig49.12056.1|Name=mRNA_H-paniculata_contig49.12056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=750bp DGDKRSLSKAAKLLEEDKKKVGSIRSFLLNFLEERDCSVKKRLDLHVHQTback to top mRNA from alignment at H-paniculata_contig49:39785..49036+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig49.12056.1 ID=mRNA_H-paniculata_contig49.12056.1|Name=mRNA_H-paniculata_contig49.12056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9252bp|location=Sequence derived from alignment at H-paniculata_contig49:39785..49036+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig49:39785..49036+ >mRNA_H-paniculata_contig49.12056.1 ID=mRNA_H-paniculata_contig49.12056.1|Name=mRNA_H-paniculata_contig49.12056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4500bp|location=Sequence derived from alignment at H-paniculata_contig49:39785..49036+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |