mRNA_H-paniculata_contig48986.12054.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48986.12054.1
Unique NamemRNA_H-paniculata_contig48986.12054.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig48986.12054.1 vs. uniprot
Match: D7FTA6_ECTSI (Cell division cycle 5-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA6_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 9.480e-36
Identity = 63/76 (82.89%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:    1 PSLSEFNEMWDACFSEWVYFPSRSAYGRISTATKADRVESAKHRFEALRAEADAQGAKARKLEGRLKMKLGGYSKV 228
            PSL EFN  W+ACFSEW YFPSR+AYGRISTATKADR+ESAKHRFEALRAEADAQ  +ARKLE RLKM+LGGY+KV
Sbjct:   36 PSLEEFNATWEACFSEWAYFPSRNAYGRISTATKADRIESAKHRFEALRAEADAQAGRARKLEARLKMRLGGYAKV 111
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BLAST of mRNA_H-paniculata_contig48986.12054.1 vs. uniprot
Match: A0A6H5L1Z3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z3_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.950e-33
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:    1 PSLSEFNEMWDACFSEWVYFPSRSAYGRISTATKADRVESAKHRFEALRAEADAQGAKARKLEGRLKMKLGGYSKV 228
            PSL EFN  W+ACFSEW YFPSR+AYGR+STATKADR+ESAKHRFEALRAEADAQ  +ARKLE RLKM+LGGY+KV
Sbjct:  691 PSLEEFNATWEACFSEWAYFPSRNAYGRVSTATKADRIESAKHRFEALRAEADAQAGRARKLEARLKMRLGGYAKV 766
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BLAST of mRNA_H-paniculata_contig48986.12054.1 vs. uniprot
Match: A0A814HXQ2_9BILA (Hypothetical protein n=3 Tax=Bdelloidea TaxID=44578 RepID=A0A814HXQ2_9BILA)

HSP 1 Score: 61.2 bits (147), Expect = 3.500e-9
Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:    7 LSEFNEMWDACFSEWVYFPSRSAYGRISTATKADRVESAKHRFEALRAEADAQGAKARKLEGRLKMKLGGY 219
            L  ++++WD C+S+ ++ PS+S + R +TATK DR+ES++ + E  R     +  +A KLE +LKM LGGY
Sbjct:  657 LDTYSKVWDECYSQVLFLPSKSRFTRANTATKKDRIESSEKKLELNRNLMALEAKRAAKLEKKLKMLLGGY 727
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BLAST of mRNA_H-paniculata_contig48986.12054.1 vs. uniprot
Match: A0A822EWG0_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A822EWG0_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 8.460e-9
Identity = 28/72 (38.89%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:    4 SLSEFNEMWDACFSEWVYFPSRSAYGRISTATKADRVESAKHRFEALRAEADAQGAKARKLEGRLKMKLGGY 219
            +L  ++++WD C+S+ ++ PS++ + R + A+K DR+ESA+H+ E  R     +  +A KLE +LK  LGGY
Sbjct:  120 NLDSYSKVWDECYSQVLFLPSKNRFTRANAASKKDRIESAEHKLELNRNLMALEAKRAAKLEKKLKTLLGGY 191
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BLAST of mRNA_H-paniculata_contig48986.12054.1 vs. uniprot
Match: A0A815QWF3_ADIRI (Hypothetical protein (Fragment) n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815QWF3_ADIRI)

HSP 1 Score: 59.3 bits (142), Expect = 1.630e-8
Identity = 29/72 (40.28%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:    4 SLSEFNEMWDACFSEWVYFPSRSAYGRISTATKADRVESAKHRFEALRAEADAQGAKARKLEGRLKMKLGGY 219
            SL  ++++WD C+S+ ++ PS++ Y R S A+K +R+ESA+ + E  R     +  +A KLE +LK  LGGY
Sbjct:  309 SLDVYSQVWDECYSQVLFLPSKNRYTRASAASKKERIESAEQKLELDRQFMSLEAKRAAKLEKKLKTLLGGY 380
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BLAST of mRNA_H-paniculata_contig48986.12054.1 vs. uniprot
Match: A0A814UY77_9BILA (Hypothetical protein n=6 Tax=Rotaria sordida TaxID=392033 RepID=A0A814UY77_9BILA)

HSP 1 Score: 55.8 bits (133), Expect = 2.780e-7
Identity = 26/72 (36.11%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:    4 SLSEFNEMWDACFSEWVYFPSRSAYGRISTATKADRVESAKHRFEALRAEADAQGAKARKLEGRLKMKLGGY 219
            +L  ++++W+ C+S+ ++ PS++ + R + A+K DR+ES +H+ E  R     +  +A KLE +LK  LGGY
Sbjct:  637 NLDSYSKVWNDCYSQVLFLPSKNRFTRANAASKKDRIESTEHKLELNRNLMALEAKRAAKLEKKLKTLLGGY 708
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BLAST of mRNA_H-paniculata_contig48986.12054.1 vs. uniprot
Match: A0A820CL18_9BILA (Hypothetical protein n=17 Tax=Rotaria TaxID=231623 RepID=A0A820CL18_9BILA)

HSP 1 Score: 54.7 bits (130), Expect = 7.120e-7
Identity = 27/72 (37.50%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    4 SLSEFNEMWDACFSEWVYFPSRSAYGRISTATKADRVESAKHRFEALRAEADAQGAKARKLEGRLKMKLGGY 219
            +L  + ++WD C+S+ ++ PS++ + R + A+K DR+ESA+ + E  R     +  +A KLE +LK  LGGY
Sbjct:  659 NLDVYAKVWDECYSQVLFLPSKTRFTRANAASKKDRIESAEQKLELNRNLMALEAKRAAKLEKKLKTLLGGY 730
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BLAST of mRNA_H-paniculata_contig48986.12054.1 vs. uniprot
Match: K8YS86_NANGC (Pre-mRNA-splicing factor CDC5/CEF1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YS86_NANGC)

HSP 1 Score: 50.4 bits (119), Expect = 2.230e-5
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:   28 WDACFSEWVYFPSRSAYGRISTATKADRVESAKHRFEALRAEADAQGAKARKLEGRLKMKLGGYSK 225
            W   +++  YFP R A+GR++ A+K DR+ +  H F  L    +  G +A KL+ RL +  GGY K
Sbjct:  693 WLKGYNDLAYFPGRQAFGRLTGASKQDRLAAVVHEFNTLAGHVEKVGKRASKLDTRLNLATGGYVK 758
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BLAST of mRNA_H-paniculata_contig48986.12054.1 vs. uniprot
Match: K8YPX1_NANGC (Cell division cycle 5-like protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YPX1_NANGC)

HSP 1 Score: 50.4 bits (119), Expect = 2.250e-5
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:   28 WDACFSEWVYFPSRSAYGRISTATKADRVESAKHRFEALRAEADAQGAKARKLEGRLKMKLGGYSK 225
            W   +++  YFP R A+GR++ A+K DR+ +  H F  L    +  G +A KL+ RL +  GGY K
Sbjct:  912 WLKGYNDLAYFPGRQAFGRLTGASKQDRLAAVVHEFNTLAGHVEKVGKRASKLDTRLNLATGGYVK 977
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48986.12054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FTA6_ECTSI9.480e-3682.89Cell division cycle 5-like n=1 Tax=Ectocarpus sili... [more]
A0A6H5L1Z3_9PHAE2.950e-3381.58MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A814HXQ2_9BILA3.500e-942.25Hypothetical protein n=3 Tax=Bdelloidea TaxID=4457... [more]
A0A822EWG0_9BILA8.460e-938.89Hypothetical protein (Fragment) n=1 Tax=Rotaria sp... [more]
A0A815QWF3_ADIRI1.630e-840.28Hypothetical protein (Fragment) n=1 Tax=Adineta ri... [more]
A0A814UY77_9BILA2.780e-736.11Hypothetical protein n=6 Tax=Rotaria sordida TaxID... [more]
A0A820CL18_9BILA7.120e-737.50Hypothetical protein n=17 Tax=Rotaria TaxID=231623... [more]
K8YS86_NANGC2.230e-537.88Pre-mRNA-splicing factor CDC5/CEF1 n=3 Tax=Monodop... [more]
K8YPX1_NANGC2.250e-537.88Cell division cycle 5-like protein n=1 Tax=Nannoch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48986contigH-paniculata_contig48986:179..1171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue8.5e-25
Seed eggNOG ortholog2880.D7FTA6
Preferred nameCDC5L
KEGG koko:K12860
KEGG Pathwayko03040,map03040
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000086,GO:0000278,GO:0000350,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0000976,GO:0000977,GO:0000981,GO:0000988,GO:0000989,GO:0001012,GO:0001067,GO:0001076,GO:0001134,GO:0001135,GO:0001221,GO:0001222,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007154,GO:0007165,GO:0008134,GO:0008150,GO:0008152,GO:0008157,GO:0008380,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0014070,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019900,GO:0019901,GO:0019902,GO:0019903,GO:0019904,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030154,GO:0030275,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031570,GO:0031974,GO:0031981,GO:0032502,GO:0032774,GO:0032870,GO:0032991,GO:0032993,GO:0033554,GO:0034097,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0042221,GO:0042770,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043434,GO:0043522,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044770,GO:0044772,GO:0044839,GO:0045292,GO:0045786,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0051726,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070669,GO:0070848,GO:0070887,GO:0071006,GO:0071007,GO:0071012,GO:0071013,GO:0071014,GO:0071310,GO:0071345,GO:0071352,GO:0071363,GO:0071375,GO:0071407,GO:0071417,GO:0071495,GO:0071704,GO:0071774,GO:0071826,GO:0071840,GO:0071987,GO:0072395,GO:0072401,GO:0072422,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901652,GO:1901653,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:1904567,GO:1904568,GO:1990089,GO:1990090,GO:1990637,GO:1990646,GO:1990837,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0050@2759
Ec32 ortholog descriptioncell division cycle 5-like
Ec32 orthologEc-13_003880.1
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko03400
Exons2
Model size228
Cds size204
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48986.12054.1prot_H-paniculata_contig48986.12054.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48986 179..1147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930447.356615-CDS-H-paniculata_contig48986:178..2681622930447.356615-CDS-H-paniculata_contig48986:178..268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48986 179..268 -
1691481296.254934-CDS-H-paniculata_contig48986:178..2681691481296.254934-CDS-H-paniculata_contig48986:178..268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48986 179..268 -
1622930447.3762946-CDS-H-paniculata_contig48986:1033..11471622930447.3762946-CDS-H-paniculata_contig48986:1033..1147Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48986 1034..1147 -
1691481296.272857-CDS-H-paniculata_contig48986:1033..11471691481296.272857-CDS-H-paniculata_contig48986:1033..1147Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48986 1034..1147 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930447.3916886-UTR-H-paniculata_contig48986:1147..11711622930447.3916886-UTR-H-paniculata_contig48986:1147..1171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48986 1148..1171 -
1691481296.2813754-UTR-H-paniculata_contig48986:1147..11711691481296.2813754-UTR-H-paniculata_contig48986:1147..1171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48986 1148..1171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48986.12054.1

>prot_H-paniculata_contig48986.12054.1 ID=prot_H-paniculata_contig48986.12054.1|Name=mRNA_H-paniculata_contig48986.12054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MWDACFSEWVYFPSRSAYGRISTATKADRVESAKHRFEALRAEADAQGAK
ARKLEGRLKMKLGGYSKV
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mRNA from alignment at H-paniculata_contig48986:179..1171-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48986.12054.1 ID=mRNA_H-paniculata_contig48986.12054.1|Name=mRNA_H-paniculata_contig48986.12054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=993bp|location=Sequence derived from alignment at H-paniculata_contig48986:179..1171- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTCACTGTCGGAGTTCAACGAGATGTGGGATGCCTGTTTTTCGGAATG
GGTTTATTTCCCCAGCAGGAGCGCGTACGGGCGGATCTCTACGGCCACTA
AAGCGGACCGGGTCGAGTCCGCGAAACACCGGTTCGAGGTGATGAGATAA
TGGCTGGTCATGTACTACGGATTATGTCCTGATAGTAGAAAAGCTCGTTT
CCGGGGGTATCTGTGCATGACATTTGAAATTAGATCGGTCGCACTTGGTG
CCAAGACCAATGCTCAAGCTGTATTGCTAGTTTTTGTTGTTTTGTTTTGT
TTTGTTTCTGAAGGGTGTTCGTTTTGAATTATCTGTGGTTTTCGTGACCA
ATTTTGAATCTCCGATGATGAAATGAAAGCAGACTGTTGGCGCGGAGGTC
GATACATGGTTTTTTTACCCACTATGTTTTGAGTCCAAAATATTTTTGGA
TCTAAAACAAGGCCATTTTTTTTTTTTTTTTTTGCTTAGCACAGTTTGGT
TCGGTGTCAAGTGTATTTCTCATATTTTTTCTCCTCGTCGTCCTTGTACA
ACAATCATGCAAGCGACGCCGTGGTGAAATATTTTTCGAGAAATTTTTAT
CACTTTTTTTATGTCGACTTGGTGTATGTGGTGTGTTGTGTTCTGTTCTG
GTGGTGAGAGCAACTCTGAATCGCCTATGGTAAAGAAACTTTATGAATAG
GCACTACTACAATGGTTGCAATATATATATATATATATATATATATTGTG
TGTGTGTGTGCTCGACTAATGATGAAACCTGGTGTGTTGAACCAGGCAGG
CTCACTGGTAGGAACATGATTTTTTTTATCCAACACAAGTAGCTTTTTTT
TTTTTAATATATATATATACCTGCTTCTGTTGGCGACGATATAATAAAAA
CAGGCACTTCGCGCTGAGGCCGATGCACAAGGTGCCAAGGCTCGCAAGCT
GGAAGGACGGCTGAAGATGAAGCTGGGAGGGTACAGTAAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig48986:179..1171-

>mRNA_H-paniculata_contig48986.12054.1 ID=mRNA_H-paniculata_contig48986.12054.1|Name=mRNA_H-paniculata_contig48986.12054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig48986:179..1171- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGGATGCCTGTTTTTCGGAATGGGTTTATTTCCCCAGCAGGAGCGC
GTACGGGCGGATCTCTACGGCCACTAAAGCGGACCGGGTCGAGTCCGCGA
AACACCGGTTCGAGATGTGGGATGCCTGTTTTTCGGAATGGGTTTATTTC
CCCAGCAGGAGCGCGTACGGGCGGATCTCTACGGCCACTAAAGCGGACCG
GGTCGAGTCCGCGAAACACCGGTTCGAGGCACTTCGCGCTGAGGCCGATG
CACAAGGTGCCAAGGCTCGCAAGCTGGAAGGACGGCTGAAGATGAAGCTG
GGAGGGTACAGTAAGGTGGCACTTCGCGCTGAGGCCGATGCACAAGGTGC
CAAGGCTCGCAAGCTGGAAGGACGGCTGAAGATGAAGCTGGGAGGGTACA
GTAAGGTG
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