mRNA_H-paniculata_contig4896.12050.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4896.12050.1
Unique NamemRNA_H-paniculata_contig4896.12050.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4896.12050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4896contigH-paniculata_contig4896:6121..6928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size312
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4896.12050.1prot_H-paniculata_contig4896.12050.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4896 6121..6842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930446.2215781-CDS-H-paniculata_contig4896:6120..62331622930446.2215781-CDS-H-paniculata_contig4896:6120..6233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4896 6121..6233 -
1691481295.9672675-CDS-H-paniculata_contig4896:6120..62331691481295.9672675-CDS-H-paniculata_contig4896:6120..6233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4896 6121..6233 -
1622930446.2350216-CDS-H-paniculata_contig4896:6730..68421622930446.2350216-CDS-H-paniculata_contig4896:6730..6842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4896 6731..6842 -
1691481295.9783864-CDS-H-paniculata_contig4896:6730..68421691481295.9783864-CDS-H-paniculata_contig4896:6730..6842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4896 6731..6842 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930446.2499878-UTR-H-paniculata_contig4896:6842..69281622930446.2499878-UTR-H-paniculata_contig4896:6842..6928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4896 6843..6928 -
1691481295.9957623-UTR-H-paniculata_contig4896:6842..69281691481295.9957623-UTR-H-paniculata_contig4896:6842..6928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4896 6843..6928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4896.12050.1

>prot_H-paniculata_contig4896.12050.1 ID=prot_H-paniculata_contig4896.12050.1|Name=mRNA_H-paniculata_contig4896.12050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
MRGLQSLGLALLHPHAVYGFLGGSVRCSSVLSSQQVRGPAAACHLSRPCV
ARRAETSEGVGDVPAPSASAKINDN
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mRNA from alignment at H-paniculata_contig4896:6121..6928-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4896.12050.1 ID=mRNA_H-paniculata_contig4896.12050.1|Name=mRNA_H-paniculata_contig4896.12050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=808bp|location=Sequence derived from alignment at H-paniculata_contig4896:6121..6928- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGGAAGAAACGAGGTCTTGTAGCATGTAGAGTTTTTGTTTAAACACAA
CCCATCTGTTGACAGATATATTTGCAGCTATTGTCGATGCGAGGTCTTCA
GAGCTTGGGACTGGCGTTGCTGCATCCACATGCTGTGTACGGGTTCTTAG
GAGGATCGGTGCGATGTTCTTCGGTACTGAGTAGCCAGCAGGTTAGAGGT
GCGTCAAATTAACACACGTGGCCAGAGGGGTACCTTGTTGTGGATATTGC
AACGTGTACGCTGTGGTGAGGTTGACAGCATTTCACGACGTACGAGGATG
TTGTGCTGAGGTTGACATTGTGCATACAACGTTTGCATACTTTTTCAGCA
CATTGTCAACCTCATGGCAACATAGGGACATTATAATATCCGCAACAATG
TACTCACAAGGCCCCCTCTAGCCTCGTGTGAACTGCTACGCCATACTTAC
AAACCTCCTACGAATCTATACGATATAGACATACAGCTATACCAACTACG
GGAAGCTAGCAGATTCGGTCTGCCAGACTCATATCCCTGGAGCATTCTCG
TCGTACCTATAATAGTACCCCAAGTCGAGCAAGAGGGTCTCGTTGAATTG
CGCTTCCACTACCCATGACAATGTAACGTGGCCATGTTCCACCAACGCAT
CTTTGGTCGCTCTTCATTCCGGCCATAATGATGGACATGGGACAGGACCG
GCAGCTGCTTGCCACCTTTCTAGGCCTTGCGTTGCACGAAGGGCTGAAAC
AAGTGAAGGGGTTGGAGACGTTCCAGCACCATCAGCATCGGCGAAGATAA
ATGATAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig4896:6121..6928-

>mRNA_H-paniculata_contig4896.12050.1 ID=mRNA_H-paniculata_contig4896.12050.1|Name=mRNA_H-paniculata_contig4896.12050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig4896:6121..6928- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAGGTCTTCAGAGCTTGGGACTGGCGTTGCTGCATCCACATGCTGT
GTACGGGTTCTTAGGAGGATCGGTGCGATGTTCTTCGGTACTGAGTAGCC
AGCAGGTTAGAGATGCGAGGTCTTCAGAGCTTGGGACTGGCGTTGCTGCA
TCCACATGCTGTGTACGGGTTCTTAGGAGGATCGGTGCGATGTTCTTCGG
TACTGAGTAGCCAGCAGGTTAGAGGACCGGCAGCTGCTTGCCACCTTTCT
AGGCCTTGCGTTGCACGAAGGGCTGAAACAAGTGAAGGGGTTGGAGACGT
TCCAGCACCATCAGCATCGGCGAAGATAAATGATAATGACCGGCAGCTGC
TTGCCACCTTTCTAGGCCTTGCGTTGCACGAAGGGCTGAAACAAGTGAAG
GGGTTGGAGACGTTCCAGCACCATCAGCATCGGCGAAGATAAATGATAAT
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