mRNA_H-paniculata_contig4893.12045.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4893.12045.1
Unique NamemRNA_H-paniculata_contig4893.12045.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4893.12045.1 vs. uniprot
Match: A0A6H5L902_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L902_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.600e-20
Identity = 72/178 (40.45%), Postives = 101/178 (56.74%), Query Frame = 3 
Query: 1134 AKHANSLYERRHTAREQEAANMAAEAQ-NWPSLTVVSRLEAEIAQYDKAPTIVSHQSA-LLQYWSDAAKPTLDSGGNVLEKPRSPLLSILARVFRRIDSTSCQSDCDFSSLAITMSKLRRSMVPECVDK-MFLKLNVEHIPEVRAVLQRLDGRKAIQ*RRRMPATEAQAARVGEVVQV 1658
            A+ A + YERR   + QEAA     A+ + PS+T   R++ E+ +Y K P  V  +   +L +W DA  P LD  GNV+   + P+LS+LARV+  IDSTSCQS+ +FS L    + LR++MVP+ V+  MFL+ N   IPE+  +   L    A Q   +  A   QAA  GE V V
Sbjct:  122 ARVATTAYERRQARKVQEAAAARTSARRDQPSVT--DRVQKEVDEYTKLPAAVPAKDYDVLGFWRDAGSPRLDPHGNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMVMFLRSNPHLIPEINKLDNGLGKLLAAQAVGKAKAASVQAANAGEQVVV 297
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BLAST of mRNA_H-paniculata_contig4893.12045.1 vs. uniprot
Match: A0A6H5L256_9PHAE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L256_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.460e-19
Identity = 72/189 (38.10%), Postives = 104/189 (55.03%), Query Frame = 3 
Query: 1005 EAREALTKIGSTMNEAGRPTRLAAAPTALESESGEQASLKPPPAKHAN---SLYERRHTAREQEAANMAAEAQ-NWPSLTVVSRLEAEIAQYDKAPTIVSHQSA-LLQYWSDAAKPTLDSGGNVLEKPRSPLLSILARVFRRIDSTSCQSDCDFSSLAITMSKLRRSMVPECVDK-MFLKLNVEHIPEV 1553
            +A EAL+ +   + +   P   A  P          A+  PPP K A    + YERR   + QEAA     A+ + PS+T   R++ E+ +Y K P  V  +   +L +W DA  P LD  GNV+   + P+LS+LARV+  IDSTSCQS+ +FS L    + LR++MVP+ V+  MFL+ N   IPE+
Sbjct:   82 KALEALSTVSMNLVDTVEPGGAADVPV--------PAAATPPPEKRARVATTAYERRQARKVQEAAAARTSARRDQPSVT--DRVQKEVDEYTKLPAAVPAKDYDVLGFWRDAGSPRLDPHGNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMVMFLRSNPHLIPEI 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4893.12045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L902_9PHAE2.600e-2040.45Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5L256_9PHAE1.460e-1938.10Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4893contigH-paniculata_contig4893:8742..11123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1897
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4893.12045.1prot_H-paniculata_contig4893.12045.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4893 9041..9598 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930445.6136029-UTR-H-paniculata_contig4893:8741..90401622930445.6136029-UTR-H-paniculata_contig4893:8741..9040Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4893 8742..9040 -
1691481295.6711648-UTR-H-paniculata_contig4893:8741..90401691481295.6711648-UTR-H-paniculata_contig4893:8741..9040Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4893 8742..9040 -
1622930445.6470587-UTR-H-paniculata_contig4893:9598..101441622930445.6470587-UTR-H-paniculata_contig4893:9598..10144Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4893 9599..10144 -
1691481295.6873422-UTR-H-paniculata_contig4893:9598..101441691481295.6873422-UTR-H-paniculata_contig4893:9598..10144Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4893 9599..10144 -
1622930445.6654756-UTR-H-paniculata_contig4893:10629..111231622930445.6654756-UTR-H-paniculata_contig4893:10629..11123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4893 10630..11123 -
1691481295.698209-UTR-H-paniculata_contig4893:10629..111231691481295.698209-UTR-H-paniculata_contig4893:10629..11123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4893 10630..11123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930445.6307638-CDS-H-paniculata_contig4893:9040..95981622930445.6307638-CDS-H-paniculata_contig4893:9040..9598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4893 9041..9598 -
1691481295.6796079-CDS-H-paniculata_contig4893:9040..95981691481295.6796079-CDS-H-paniculata_contig4893:9040..9598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4893 9041..9598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4893.12045.1

>prot_H-paniculata_contig4893.12045.1 ID=prot_H-paniculata_contig4893.12045.1|Name=mRNA_H-paniculata_contig4893.12045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
MNEAGRPTRLAAAPTALESESGEQASLKPPPAKHANSLYERRHTAREQEA
ANMAAEAQNWPSLTVVSRLEAEIAQYDKAPTIVSHQSALLQYWSDAAKPT
LDSGGNVLEKPRSPLLSILARVFRRIDSTSCQSDCDFSSLAITMSKLRRS
MVPECVDKMFLKLNVEHIPEVRAVLQRLDGRKAIQ*
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mRNA from alignment at H-paniculata_contig4893:8742..11123-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4893.12045.1 ID=mRNA_H-paniculata_contig4893.12045.1|Name=mRNA_H-paniculata_contig4893.12045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2382bp|location=Sequence derived from alignment at H-paniculata_contig4893:8742..11123- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGAACCGTCCCCCCTGCCTCTTTTACAGCGTCTATCACATCGGGGAGA
AGGGCTGTTTTCGGCAATGCTGCCTCCATGTCCCTCACGCCTGAACTGAG
AAACCGCCTCAATCGGAAAACGGTCCTTTGGACCATCATGGATGGCCGTC
CGCGGGAGGTCATCGACGACATGGGCTTCAAGATGCTCGTTGGAGAATAT
TTGCGTGAATGCATGAGCTCAATGCCTTCATTATTTGTCCTTGACCAAGA
CGCTGAATGCTCAGTGTGATAAGGCGAAGGCAGACATCATCAAGACGTTC
AACAGTCTGCGGGAAGAGTTTCAATGCACCGGGCAGACGGGAGGGTAATG
TGGGCTTCAACTAGACTTGACAGTTATGAAGGCAGTGATGAAGACAAGGA
GGATGAAGACACCGACAGCAATGGCGACAGAGGCAGTGGCACATCCGGTG
GTACAGGGAAAAACTAACGCACGGAAGGCGATGACAACGAGACGGCAAGG
ATAGGCAGGCGGAAGTTGACGATGCTAACACAGCCCGTCACGATGATACC
CGTTGAGATATCTTCTTTGGGTCTTTGGCGTCAGAGTTATTATTATTATA
TATATATTTTTTTTTAACCCCCGGAAGGCTAAGGCAAAACCCTTTCCGCT
GCTTCCACTCTTCCGAAGATTACTGAGTGTCTGCATTTCCTAGAGTTATT
ATTAGTGAAGATCACTATTTCTATATAACTGCTTCGTACTTCATTTTCTC
TCTCCAACGACACCCGAGCATTGCCGTTTGCATTTTCAATGAGTGCTCAT
CTTATTTTCATACTATCGCTCTTTACCGGTCCGTATCACTGAGCCCGCTG
AAAAATCAATTATCTAGCCCTTATTTCCTTGTTTTTCATCACTGGACTCA
AGACCAGTAACAAGCAACCATACCCAATATGTAATATGTAAATTGATGTT
ATCCCTTGTCGCCTTCTATTTCGCGACAGGTGGTGTTAACAGTTCACCTT
TCTGTCGCACACGCTCGTGCTGGAGGGGTCCATCTGCGACTATCTGCACA
TGAACCCTCACATGGCCCGGCGTTCCCCCTCGCCAATGGATTAGCTTGTC
GTAAAGGAAGTTTGCAGCATTCTGGAGACTTCTAAGGAAGTCAACGCTGC
TAATCAAGGAGGAAAAGATGGACAGCTGAGTCGCGCGATATTCCTTCGTC
ACGAGCTATGCTCTATCCTGAGTAGTCTCCATGAGGTGAAGCTCATCGAC
TGGGGGAGCCGTCGCGATGCCACTATCGATATCGCGGACGAGAACAAAAT
GGTCAAAGTCGATCACCTCATGGACGACAGCCAGACCGTGCGGCGGGTCA
CTTTGGAGCAGCTGCAGATGCGCCAGGTGGACAGCACCATGGCTGACGCG
GAGTTGATCGCCCTCTAATTGGTCCCATGCTACAAGTCGCTGTCTTCTAA
CGTCTGTGGAAACGGCGACGATGAGGCCGCTTGAGAGCAGAGGCTCGCGA
AGCGTTGACAAAGATCGGTTCCACGATGAATGAAGCCGGCAGACCCACCC
GCTTGGCAGCTGCCCCCACTGCTCTAGAAAGCGAAAGTGGCGAGCAAGCT
TCCCTCAAACCTCCCCCAGCAAAGCATGCGAACAGTTTATACGAGAGGCG
CCACACTGCACGAGAGCAGGAAGCAGCCAATATGGCTGCCGAGGCGCAGA
ATTGGCCATCTTTAACCGTGGTATCGCGTCTGGAGGCGGAAATCGCACAG
TATGACAAGGCGCCTACCATCGTGAGCCATCAATCTGCCTTGTTGCAGTA
CTGGAGTGACGCAGCAAAGCCGACGCTCGACAGTGGCGGCAATGTGCTAG
AAAAGCCGAGATCCCCTCTTCTGTCCATATTAGCAAGGGTCTTCCGTAGG
ATCGACAGTACAAGCTGCCAATCGGACTGCGACTTTTCATCGTTAGCCAT
CACCATGAGCAAACTCAGGCGCAGCATGGTGCCAGAGTGTGTTGACAAGA
TGTTTTTGAAGCTTAACGTTGAGCACATCCCTGAAGTACGGGCGGTTTTG
CAAAGGTTGGACGGAAGGAAGGCGATACAGTAAAGGAGGCGGATGCCGGC
TACCGAGGCTCAGGCAGCAAGGGTGGGGGAAGTGGTTCAAGTGATGAGAG
TAGGGAGCCTATGACTACGACATTGCGAGGGAGAAGCCAGCATTGACGAT
TAGGGAGGGGGTGCATCGGGTCCGGCGCAGTAGGGCACCGCCAGTGATTG
TTCATGTTGTTGGCTGTTGTTCCTGTTACTGTATGCTTTTTTGCTTTGTT
ATCCTTTTGTGTTTAGTTCCTTTTTTTTTTGTTTCTCTTGCTGTTGCAGT
ACCATTCAATCTATACAACATGTACCGCGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4893:8742..11123-

>mRNA_H-paniculata_contig4893.12045.1 ID=mRNA_H-paniculata_contig4893.12045.1|Name=mRNA_H-paniculata_contig4893.12045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig4893:8742..11123- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATGAAGCCGGCAGACCCACCCGCTTGGCAGCTGCCCCCACTGCTCT
AGAAAGCGAAAGTGGCGAGCAAGCTTCCCTCAAACCTCCCCCAGCAAAGC
ATGCGAACAGTTTATACGAGAGGCGCCACACTGCACGAGAGCAGGAAGCA
GCCAATATGGCTGCCGAGGCGCAGAATTGGCCATCTTTAACCGTGGTATC
GCGTCTGGAGGCGGAAATCGCACAGTATGACAAGGCGCCTACCATCGTGA
GCCATCAATCTGCCTTGTTGCAGTACTGGAGTGACGCAGCAAAGCCGACG
CTCGACAGTGGCGGCAATGTGCTAGAAAAGCCGAGATCCCCTCTTCTGTC
CATATTAGCAAGGGTCTTCCGTAGGATCGACAGTACAAGCTGCCAATCGG
ACTGCGACTTTTCATCGTTAGCCATCACCATGAGCAAACTCAGGCGCAGC
ATGGTGCCAGAGTGTGTTGACAAGATGTTTTTGAAGCTTAACGTTGAGCA
CATCCCTGAAGTACGGGCGGTTTTGCAAAGGTTGGACGGAAGGAAGGCGA
TACAGTAAATGAATGAAGCCGGCAGACCCACCCGCTTGGCAGCTGCCCCC
ACTGCTCTAGAAAGCGAAAGTGGCGAGCAAGCTTCCCTCAAACCTCCCCC
AGCAAAGCATGCGAACAGTTTATACGAGAGGCGCCACACTGCACGAGAGC
AGGAAGCAGCCAATATGGCTGCCGAGGCGCAGAATTGGCCATCTTTAACC
GTGGTATCGCGTCTGGAGGCGGAAATCGCACAGTATGACAAGGCGCCTAC
CATCGTGAGCCATCAATCTGCCTTGTTGCAGTACTGGAGTGACGCAGCAA
AGCCGACGCTCGACAGTGGCGGCAATGTGCTAGAAAAGCCGAGATCCCCT
CTTCTGTCCATATTAGCAAGGGTCTTCCGTAGGATCGACAGTACAAGCTG
CCAATCGGACTGCGACTTTTCATCGTTAGCCATCACCATGAGCAAACTCA
GGCGCAGCATGGTGCCAGAGTGTGTTGACAAGATGTTTTTGAAGCTTAAC
GTTGAGCACATCCCTGAAGTACGGGCGGTTTTGCAAAGGTTGGACGGAAG
GAAGGCGATACAGTAA
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