mRNA_H-paniculata_contig4887.12028.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4887.12028.1
Unique NamemRNA_H-paniculata_contig4887.12028.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4887.12028.1 vs. uniprot
Match: D7FI09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI09_ECTSI)

HSP 1 Score: 435 bits (1118), Expect = 3.360e-151
Identity = 209/314 (66.56%), Postives = 255/314 (81.21%), Query Frame = 1
Query:    1 MGSGVAYKKNLMQAPATMTTCSSEAFSNVARGDYRVPDRRGVSAKHHSAPPQERSKPFLHCTVYENDFRDCSKEADKLD---------KQGESAFKREFDTLESGTGNVDIRDVPRLIEGVLGRDARPWIKDRILKALEENRNGKITWLELKEGMSKVLASTKRDLVHGEKQVPEWLVSSRKVNPSVSQGQAVESCYQIDIGREGDIPGNRRIWYKTGMSSTTLDLFNGTTKETYQVPGYGGFMPASTMNARARQHGEMREPRVKALDLRLSYRHNTPGYTGHAPASACNDSGPARCGANSLTTSGAAALGLIL 915
            MG GVAY+  +  AP TMTTCSSEAFSNV RGDY+VPDRRGVSAKH SA PQ+RSKPFLH ++YE+DFR+ S E D LD         + GE+AFKREFD L++G G V IRD+P+LI+GVLGRD RPWI DRILK  E  R+GK+TWL+L++G+ KV  S + D+ + E+++PEWLV++RKV P+V+ GQ  ESCYQ+D+G++G+IP +RRIWYKTGMSSTTLDLF GTTK TYQVPGYGGF+PAS MN RAR+HG+M+  R   LDLRL YRHN PGYTGHAPA+ACND GP+RCG++ LTTSGAAALG+IL
Sbjct:    1 MGRGVAYENGVALAPPTMTTCSSEAFSNVTRGDYQVPDRRGVSAKHFSAKPQDRSKPFLHDSLYEHDFRNFSDEVDGLDGGEGPRGGERDGENAFKREFDRLDAGNGVVHIRDMPKLIQGVLGRDVRPWILDRILKMFEAKRDGKVTWLDLQDGLRKVAESARSDVSYKEREMPEWLVANRKVMPAVTHGQVTESCYQMDMGKDGEIPRDRRIWYKTGMSSTTLDLFEGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRLDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSGAAALGIIL 314          
BLAST of mRNA_H-paniculata_contig4887.12028.1 vs. uniprot
Match: A0A835ZLH4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLH4_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.130e-65
Identity = 128/342 (37.43%), Postives = 194/342 (56.73%), Query Frame = 1
Query:    1 MGSGVAYKKNL-MQAPATMTTCSSEAFSNVARGDYRVPDRRGVSAKHHSAPPQERSKPFLHCTVYENDFRDCSKEADKLDKQGESAFKREF-----------DTLESGTG----------------------NVDIRDVPRLIEGVLGRDARPWIKDRILKALEENRNGKITWLELKEGMSKVLASTKRD---LVHGEKQVPEWLVSSRKVNPSVSQGQAVESCYQIDIGREGDIPGNRRIWYKTGMSSTTLDLFNGTTKETYQVPGYGGFMPASTMNARARQHGEMREPRVKALDLRLSYRHNTPGYTGHAPASACNDSGPARCGANSLTTSGAAALGLIL 915
            +G GV Y +   +   AT+ T S+E+ S+V + D+R P +RG  A   +A    R+KPFLH T+++  +RD ++E +        A++  F            +L   +G                       +D+  +P L+  V  +  R W+ DR+ KA E +R+G++ W      +++VL++  +D   LV     +PEW++ SRK +P++  G+ + SCYQ D+G  G  P  R++ +K GM  TT DLF GTTK+T+ VPGYGGF+PAS +NARA QHG+M++ R  + +LRL ++HN  GYTGH   +ACND G   CG +  TTSGAAALGL+L
Sbjct:   46 VGHGVQYNEGPPIDEHATIKTVSAESTSHVTKQDFRPPGKRGCQAAT-AAAAVARTKPFLHSTLHKESYRDINQEIEGFAAASVEAYRCAFLAAARDVQATSISLCGSSGXXXXXXXXXXXXXXSEGPMASPTIDVNQIPGLLVAVHSKPPR-WLADRLRKACEGDRSGQVRWDTFVAALARVLSTASKDGSLLVRTA--MPEWVLISRKAHPTIQHGKRITSCYQHDVG--GAAPAQRQLTFKRGMRGTTQDLFEGTTKDTFHVPGYGGFIPASKVNARAMQHGDMQDARAYSANLRLFHKHNMAGYTGHQGHAACNDRGELLCGTHPATTSGAAALGLLL 381          
BLAST of mRNA_H-paniculata_contig4887.12028.1 vs. uniprot
Match: A0A7R9UFG0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFG0_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.520e-49
Identity = 107/302 (35.43%), Postives = 158/302 (52.32%), Query Frame = 1
Query:    1 MGSGVAYKKNLMQAPATMTTCSSEAFSNVARGDYRVPDRRGVSAKHHSAPPQERSKPFLHCTVYENDFRDCSKEADKLDK--QGESAFKREFDTLESGTGNVDIRDVPRLIEGVLGRDARPWIKDRILKALEENRNGKITWLELKEGMSKVLASTKRDLVHGEKQVPEWLVSSRKVNPSVSQGQAVESCYQIDIGREGDIPGNRRIWYKTGMSSTTLDLFNGTTKETYQVPGYGGFMPASTMNARARQHGEMREPRVKALDLRLSYRHNTPGYTGHAPASACNDSGPARCGANSLTTSGAAA 900
            +G+G+ Y   L   P    T +  A + V    Y  PDRRGVSA    +  +   K F+  TVY +DF D   +  KL    +  +AF++ F     G G +D   +P++++  LG  A   IK +   A  ++R G ++W + ++ + ++L +  ++   G   VPEWLV S K  P V  G A++SCYQ D+G   + P  +   YK GM ST+ DL  GTTK+TY +PGY GF+P S  N+ A      +  R     +  + +    GYTGH P++  ND GP  CG N LTT+GA A
Sbjct:   34 VGTGLVYSAPLPTRPKWGETITKAATTLVRPRLYSAPDRRGVSALFEESN-KALPKRFMGSTVYRSDFIDLRADLVKLQDACRSPAAFQKAFFHYSRG-GELDTMLLPKVLDMALGERASEGIKSKFAAAFSKSRAGFVSWDDFRQKLGQILEAAVKEGSSGGVSVPEWLVLSSKPIPKVIVGPALKSCYQCDMGLRNENPQTKPYTYKAGMYSTSYDLLRGTTKDTYHLPGYDGFIPESRRNSFAITQVNAKRTRASRERIAENVKPAVSGYTGHIPSNLINDRGPPLCGLNPLTTTGAGA 333          
BLAST of mRNA_H-paniculata_contig4887.12028.1 vs. uniprot
Match: A0A1V9ZS18_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZS18_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.850e-30
Identity = 100/306 (32.68%), Postives = 140/306 (45.75%), Query Frame = 1
Query:   16 AYKKNLMQAPATMTTC-SSEAFSNVARGDYRVPDR-----RGVSAKHHSAPPQERSKPFLHCTVYENDFRDCSKEADKLDKQGESAFKREFDTLESGTGNVD--IRD-VPRLIEGVLGRDARPWIKDRILKALEENRNGKITWLELKEGMSKV--LASTKRDLVHGEKQVPEWL--VSSRKVNPSVSQGQAVESCYQIDIGREGDIPGNRRIWYKT-GMSSTTLDLFNGTTKETYQVPGYGGFMPASTMNARARQHGEMREPRVKALDLRLSYRHNTPGYTGHAPASACNDSGPARCGANSLTTSG 891
            A K + M      T C  +  F +V R D+ +  +     RG    H+        K FL  ++YE DF     +   L +     +KR FD L    G      RD V  L+  V G      + D      +   +G ITW   +E + ++    S     +HG+   P W+  +S R++ P    G    S +QID G  G  P  R    +T GM+STT DL +GTTK T+ +P YGGFMP +  N  A   G+  +PR K  DLRL + +N PGYTGH P  + N  G A  G +  TT+G
Sbjct:   31 ATKFSAMGQSIMNTMCVQNPTFGSVYRADFGLVTKADYVSRGPKESHNDVVA---GKKFLGQSLYETDFVHFQNQGKALLEMPREEYKRAFDALAEAGGQEPRLSRDLVKELLTAVYGTPPSARMLDIYAHMFDPIADGYITWPVFEEALERLTLFVSNATSKLHGK---PSWMEYLSLRRLLP----GTMPSSSHQIDYGTYGSDPLARPYLGRTKGMASTTSDLADGTTKNTFHIPRYGGFMPEAPHNPTAVAQGDCPQPRSKGADLRLYHLNNIPGYTGHKPVDSKNVRGEAATGTDQRTTNG 326          
BLAST of mRNA_H-paniculata_contig4887.12028.1 vs. uniprot
Match: A0A485KW59_9STRA (Aste57867_12656 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KW59_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.400e-28
Identity = 92/304 (30.26%), Postives = 143/304 (47.04%), Query Frame = 1
Query:   28 NLMQAPATMTTCSSEAFSNVARGDYRVPDRRGVSAKHHSAPPQERSKP---------FLHCTVYENDFRDCSKEADKLDKQGESAFKREFDTLESGT----GNVDIR--DVPRLIEGVLGRDARPWIKDRILKALEENRNGKITWLELKEGMSKVLASTKRDLVHGEKQVPEWLVSSRKVNPSVSQGQAVESCYQIDIGREGDIPGNRRIWYKT-GMSSTTLDLFNGTTKETYQVPGYGGFMPASTMNARARQHGEMREPRVKALDLRLSYRHNTPGYTGHAPASACNDSGPARCGANSLTTSG 891
            +++Q+  T     + AF  V RGD+      G+ AK     P   SK          FL  ++Y++DF +   +  ++ +    A++  FD L  GT    G+  I   DV  L+  V G+     + D      +   +G ++W   +E + ++ +    + V        WL   + V P+ +      S +Q+D G  G  P  R    +T GM+STT DLF+GTTK T+ +P Y GF+P +  N  A   G+    R KA DLRL + +N PGYTGH P  + N  G A+ G +  TT+G
Sbjct:   38 SIVQSQVTSVRVVNPAFEPVTRGDF------GLVAKQDYLHPTRSSKDAVEIAGSRTFLGQSLYQSDFLNFQDQGRRIAEIPLEAYEAAFDDLAQGTNQEGGSKKIARDDVKHLLRKVYGKAPTSRVLDIYTHMFDTCPDGFVSWEIFQEAVLRLSSFLLHETVKTTPGQAGWLDFVQHVIPNGTPS----SSHQVDFGVYGSEPIGRPYVSRTHGMASTTSDLFDGTTKATFHIPRYQGFIPQTKFNPTAVVQGDAERGRTKAEDLRLYHLNNVPGYTGHKPVDSKNVRGEAKTGTDIRTTNG 331          
BLAST of mRNA_H-paniculata_contig4887.12028.1 vs. uniprot
Match: A0A6G0XRS2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRS2_9STRA)

HSP 1 Score: 117 bits (293), Expect = 6.280e-27
Identity = 78/252 (30.95%), Postives = 124/252 (49.21%), Query Frame = 1
Query:  163 SKPFLHCTVYENDFRDCSKEADKLDKQGESAFKREFDTLES--------GTGNVDIRDVPRLIEGVLGRDARPWIKDRILKALEENRNGKITWLELKEGMSKVLASTKRDLVHGEKQVPEWLVSSRKVNPSVSQGQAVESCYQIDIGREGDIPGNRRIWYKT-GMSSTTLDLFNGTTKETYQVPGYGGFMPASTMNARARQHGEMREPRVKALDLRLSYRHNTPGYTGHAPASACNDSGPARCGANSLTTSG 891
            S+ FL  ++Y+ DF +  +E  ++ +    AF+  FD+L              ++  DV  L++ V G+     I +      +   +G +TW   +E   ++ +      +        W+   +KV P+ +      S +QID G  G  P  R    ++ GM+STT DLF+G+TK +Y +P Y GF+P +  N  A   GE  +PR KA DLRL + +N PGYTGH P  + N  G A+ G +  TT+G
Sbjct:   85 SRTFLGQSLYQRDFANFHEEGKRIAELSMEAFQAAFDSLAEEPNQESPDAVKKINRDDVGELLQAVYGKPPATRILEIYAHMFDVCPDGFVTWEVFQEATLRLSSFLLHQTIKPSSHSIGWVDFVKKVLPNGTPS----SSHQIDYGTYGSDPLARPYMNRSHGMASTTSDLFDGSTKASYHIPRYQGFIPHTKCNPTAVSQGECEKPRPKAEDLRLYHSNNIPGYTGHKPVDSKNVRGEAKTGCDVRTTNG 332          
BLAST of mRNA_H-paniculata_contig4887.12028.1 vs. uniprot
Match: A0A7S1C2K7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C2K7_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.020e-26
Identity = 89/281 (31.67%), Postives = 140/281 (49.82%), Query Frame = 1
Query:   37 QAPATMTTCSSEAFSNVARGDYRVPDRRGVSA-KHHSAPPQERSKPFLHCTVYENDFRDCSKEADKL----DKQGESAFKREFDTLESGTGNVDIRDVPRLIEGVLGRDARPWIKDRILKA-LEENRNGKITWLELKEGMSKVLAST------KRDLVHGEKQVPEWLVSSRKVNPSVSQGQAVESCYQIDIGREGDIPGNRRIWYKTGMSSTTLDLFNGTTKETYQVPGYGGFMPASTMNAR-------ARQHGEMREPRVKALDLRLSYRHNTPGYTGH 822
            + PA   T ++E    V    Y+VPD+ GV A K H  P   R   F+  +     F D + +A +L    D++ E+ FKR FD     +G +D+R+VP L+  + G    P    R+  A  ++NR+GK++W E + G+++V  +       K   + G    P W+   + V   +  G+  +S     +G +G+ P  R +   +GM+STT DLF GT+K T Q+PGYGGF+P + M ++         Q    R+      +L L+    TPGYTGH
Sbjct:   61 RGPAVPGTLTAETQRYVKPKHYKVPDKLGVMAGKSHQLPKPAR---FVAQSASAATFVDFAAQAGRLAKMSDEEVEAYFKR-FDR--DNSGYLDLREVPALLGDLYGAPEAPERVRRLFDAYFDDNRDGKVSWEEFRNGVARVRKAMEVESRPKGPRLRG----PAWV--GKPVPAVIGPGER-KSAAMAYVGEDGEDPAARPLAEGSGMASTTKDLFEGTSKRTLQLPGYGGFIPIAAMGSKFAGEAMEQAQGSAERDTFHAKTNLTLTITGGTPGYTGH 328          
BLAST of mRNA_H-paniculata_contig4887.12028.1 vs. uniprot
Match: A0A7S2S8A6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8A6_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.440e-25
Identity = 58/141 (41.13%), Postives = 82/141 (58.16%), Query Frame = 1
Query:  493 PEWLVSSRKVNPSVSQGQAVESCYQIDIGREGDIPGNRRIWYKTGMSSTTLDLFNGTTKETYQVPGYGGFMPASTMNARARQHGEMREPRVKALDLRLSYRHNTPGYTGHAPASACNDSGPARCGANSLTTSGAAALGLIL 915
            PEWL +S++          V S YQ D G   D   ++   +K GM++TTLDL  GT K+T+ +PGY G +P +  N    +  +  EPR  A +LRL ++HN  GYTGH P  A ND G    G ++LT SGA+A+G++L
Sbjct:  116 PEWLTASKQTLVEPMARYPVRSSYQKDFGISVDSMKDKPYLHKNGMATTTLDLNEGTAKQTHHIPGYSGTIPVNRRNEDIVRQSDAAEPRKVASELRLYHKHNMTGYTGHNPTHASNDYGVRLSGCSTLTMSGASAVGMML 256          
BLAST of mRNA_H-paniculata_contig4887.12028.1 vs. uniprot
Match: A0A024U6R1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U6R1_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.340e-23
Identity = 94/314 (29.94%), Postives = 143/314 (45.54%), Query Frame = 1
Query:   28 NLMQAPATMTTCS--SEAFSNVARGDYRVPDRRGVSAKHHSAPPQE---------RSKPFLHCTVYENDFRDCSKEADKLDKQGESAFKREFDTL-----ESGTGNVDIR-------DVPRLIEGVLGRDARPWIKDRILKALEENRNGKITWLELKEGMSKVLASTKRDLVHGEKQVPEWL--VSSRKVNPSVSQGQAVESCYQIDIGREGDIPGNRRIWYKT-GMSSTTLDLFNGTTKETYQVPGYGGFMPASTMNARARQHGEMREPRVKALDLRLSYRHNTPGYTGHAPASACNDSGPARCGANSLTTSG 891
            N++Q  AT T     + +F  V RG Y      G   KH    P            S+ FL  T+Y++DF +  +E  ++     +A+   FD L     +  T + D +       DV  ++  V G+     I D      +   +G I+W   +E + ++ +      V    Q   WL  V+++ V      G    S +QID G  G  P  R    +T GM+STT D+F+GT+K T+ +P Y GF+P +  N  A   G+    R K+ DLRL + +N PGYTGH P  + N  G A+ G +  TT+G
Sbjct:   38 NIVQNQATNTAIRIVNPSFEAVTRGHY------GQVTKHDFETPTRPVSRGAEIANSRTFLGQTLYQHDFLNFHEEGRRIAALPMAAYAAAFDELTHVPNQDSTSDADPKQKKIARDDVKAVLCAVYGKPPTARILDIYAHMFDACPDGFISWEIFQEAVCRLSSLLLHQTVKVSGQAG-WLEFVAAKHV----LHGGTPASSHQIDFGTYGGNPLARPYVGRTNGMASTTADMFDGTSKATFHIPRYQGFIPHTKYNPTAVAQGDCEHVRGKSEDLRLYHLNNLPGYTGHKPVDSKNVRGEAKTGTDGRTTNG 340          
BLAST of mRNA_H-paniculata_contig4887.12028.1 vs. uniprot
Match: W4FY68_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FY68_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.150e-22
Identity = 93/315 (29.52%), Postives = 145/315 (46.03%), Query Frame = 1
Query:   28 NLMQAPATMTTC-----SSEA-----FSNVARGDYRVPDRRGVSAKHHSAPPQERSKPFLHCTVYENDFRDCSKEADKLDKQGESAFKREFDTL------ESGTGNVDI--------RDVPRLIEGVLGRDARPWIKDRILKALEENRNGKITWLELKEGMSKVLASTKRDLVHGEKQVPEWL--VSSRKVNPSVSQGQAVESCYQIDIGREGDIPGNRRIWYKT-GMSSTTLDLFNGTTKETYQVPGYGGFMPASTMNARARQHGEMREPRVKALDLRLSYRHNTPGYTGHAPASACNDSGPARCGANSLTTSG 891
            N++Q  AT T       S EA     F +V + DY  P R     +  +      S+ FL  T+Y+NDF +   E  ++     + +   FD L      +    + D+         DV  L+  V G+     I +      +   +G I+W   +E ++++ +      +    Q   W   V+++++ P    G    S +Q+D G  G  P  R    +T GM+STT DLF+GTTK T+ +P Y GF+P +  N  A   G+  + R K  DLRL + +N PGYTGH P  + N  G A+ G +S TT+G
Sbjct:   38 NIVQNQATNTAIRIVNPSFEAVTRSHFGHVTKHDYENPARPASRGREIA-----NSRTFLGQTLYQNDFLNFQDEGRRIAALPAAVYAASFDQLATVPNQDPTPSDSDLFKLKRLARDDVKTLLRQVYGKPPTSRILEIYAHMFDACPDGFISWDVFQEAVARLASFLLHQTIKISGQAG-WFDFVAAKQMLP----GGTPASSHQLDFGTYGSEPLARPYIGRTNGMASTTTDLFDGTTKATFHIPRYQGFIPQTKYNPTAVAQGDGEQTRGKEEDLRLYHLNNLPGYTGHKPVDSKNVRGEAKTGTDSRTTNG 342          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4887.12028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FI09_ECTSI3.360e-15166.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZLH4_9STRA1.130e-6537.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9UFG0_9STRA2.520e-4935.43Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1V9ZS18_9STRA3.850e-3032.68Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485KW59_9STRA4.400e-2830.26Aste57867_12656 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XRS2_9STRA6.280e-2730.95Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S1C2K7_9STRA2.020e-2631.67Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2S8A6_9STRA2.440e-2541.13Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A024U6R1_9STRA1.340e-2329.94Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4FY68_9STRA1.150e-2229.52Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4887contigH-paniculata_contig4887:5802..10461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score437.6
Seed ortholog evalue4.9e-120
Seed eggNOG ortholog2880.D7FI09
Hectar predicted targeting categoryother localisation
EggNOG OGs2CYS9@1,2S63T@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_006620.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size918
Cds size918
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4887.12028.1prot_H-paniculata_contig4887.12028.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4887 5802..10461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930443.6814458-CDS-H-paniculata_contig4887:5801..60381622930443.6814458-CDS-H-paniculata_contig4887:5801..6038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4887 5802..6038 -
1691481294.859627-CDS-H-paniculata_contig4887:5801..60381691481294.859627-CDS-H-paniculata_contig4887:5801..6038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4887 5802..6038 -
1622930443.6993473-CDS-H-paniculata_contig4887:6732..68941622930443.6993473-CDS-H-paniculata_contig4887:6732..6894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4887 6733..6894 -
1691481294.8745482-CDS-H-paniculata_contig4887:6732..68941691481294.8745482-CDS-H-paniculata_contig4887:6732..6894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4887 6733..6894 -
1622930443.7177444-CDS-H-paniculata_contig4887:7311..74221622930443.7177444-CDS-H-paniculata_contig4887:7311..7422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4887 7312..7422 -
1691481294.8835816-CDS-H-paniculata_contig4887:7311..74221691481294.8835816-CDS-H-paniculata_contig4887:7311..7422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4887 7312..7422 -
1622930443.7340956-CDS-H-paniculata_contig4887:7961..81501622930443.7340956-CDS-H-paniculata_contig4887:7961..8150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4887 7962..8150 -
1691481294.8923306-CDS-H-paniculata_contig4887:7961..81501691481294.8923306-CDS-H-paniculata_contig4887:7961..8150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4887 7962..8150 -
1622930443.762836-CDS-H-paniculata_contig4887:8374..84741622930443.762836-CDS-H-paniculata_contig4887:8374..8474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4887 8375..8474 -
1691481294.9005048-CDS-H-paniculata_contig4887:8374..84741691481294.9005048-CDS-H-paniculata_contig4887:8374..8474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4887 8375..8474 -
1622930443.7758765-CDS-H-paniculata_contig4887:10342..104611622930443.7758765-CDS-H-paniculata_contig4887:10342..10461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4887 10343..10461 -
1691481294.9089096-CDS-H-paniculata_contig4887:10342..104611691481294.9089096-CDS-H-paniculata_contig4887:10342..10461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4887 10343..10461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4887.12028.1

>prot_H-paniculata_contig4887.12028.1 ID=prot_H-paniculata_contig4887.12028.1|Name=mRNA_H-paniculata_contig4887.12028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=306bp
MGSGVAYKKNLMQAPATMTTCSSEAFSNVARGDYRVPDRRGVSAKHHSAP
PQERSKPFLHCTVYENDFRDCSKEADKLDKQGESAFKREFDTLESGTGNV
DIRDVPRLIEGVLGRDARPWIKDRILKALEENRNGKITWLELKEGMSKVL
ASTKRDLVHGEKQVPEWLVSSRKVNPSVSQGQAVESCYQIDIGREGDIPG
NRRIWYKTGMSSTTLDLFNGTTKETYQVPGYGGFMPASTMNARARQHGEM
REPRVKALDLRLSYRHNTPGYTGHAPASACNDSGPARCGANSLTTSGAAA
LGLIL*
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mRNA from alignment at H-paniculata_contig4887:5802..10461-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4887.12028.1 ID=mRNA_H-paniculata_contig4887.12028.1|Name=mRNA_H-paniculata_contig4887.12028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4660bp|location=Sequence derived from alignment at H-paniculata_contig4887:5802..10461- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAGCGGTGTGGCCTACAAGAAGAACCTCATGCAAGCACCAGCCAC GATGACGACGTGCAGTTCCGAAGCGTTTTCGAACGTTGCAAGGGGGGATT ACCGTGTGCCAGACAGGCGGTAAGCGCAGTCCATCAGTGCACATGCTGGT GTCAAACACCAGAACAGATCAGGAGTATTAGATGCTGTAAGCTTAGGTGA TATAAGGTCCAATCGATACATATCTTCACATTAGACATCATTGACAGTAC CCGGAAGTACCACAACGAAAACTGATATCATGCCTGGAAGGTTCCTCGTT GATAGCGTTCCATCTATCCCCGTGCGTATTGGAAACAACTAATGAAAGCC AAGCAAAAGGTTAATTCTTCGATAAAAAGCACTTATTACTTCATGAGAGC GTTTTCCCTTGGACACGGGGATACTAGTTGCGAAGTGATACTCACCTGCA TCTAGTCTAAGAGGAGCCGTTAAAATAAAAAGGGTCAGTCAATTACATAG ATGGTGGAAATTTGTCCTCACCATTGCAATAATATTTACCACTGTACTGT ACACTACCCTCCCTGTAACATATATGCGTAACTTTGCACTCAATTTAGTA GTATTTGGCCACATCGATCGATGTAGCTTTATTGATTGTCGTTAGAACAC GTAAATTGTATCCTTCACATTTCACTGATTACAATGTACTCTGCACCGTC AACATATAATATATTTATCACCATATTTACGAACGACTCAAAAATGGTAC GTCACGCGCAGGCAAAACAACAAACATGCCTTTTACATGTTATTCTTCTC ATTGTTAGTTAGTATTTATATTTTCTCTCGGATCCGGATAGACAAATTCT TGAAGGTTAATTGGCCATTCTGATAATCCTGTTCATCAGACGTTAACCGA AGGATGTTATTTTGATATCTTGAAACTGACAGGGGATCAAAACTATGACA GAAGAAAATAACTGAAGACTTTAGTCTTTTTGGTCACAAAAAAAAACGAC TCTGTTGTTTTCTGGCCACCTAGAAAACGAAATTGTTGTTTTTTGCCACG AAAACATATCAATTTGTTGGCGTTTTTGAGGACTAAAACAGCGGGTTTGG TTTGATTTTGGGCGGGCGCGGTCCGTTCTCAGCCCTGGGAGATCTGCCCC AAAGTGATTTTTGTATACGGATTATTTACCCTAATACATCCCAAGGGTCA ACAGATTACGATGCGATAATTTTAGTTGAGCGAAGGTTTATATTTCTCAG CGCTGAGCCGTAAAGCTGTTGTACATCAGCACTTATTGTCATACTCTTCA ATGTAGGGGTTCTGGAAGCTATTGAATTATTAGATTGCTACGGTGGTGTT GAGATCTCTCAGTTAGTTGGAGCACCTGTTTCTCCACTGGTTTGAGAATC AGAAACAAATGCGGGGTGGAGGTCAGTGGATGGTTTGGATCTCATCAATC CATCCAGCGATAACGACTGTAAAGCTTCGCTCACCGTCAGCAGGCCTGTT GTGTAAGCAAATCATGCATCGATGCGACATATACAGAACCCTTAGCGAAG CAAAAAAAAATCTAGTCAACGAATTTCTCAGTCCTAAGAGAAGCTGAATT CCCGTGTTTTTTTTAGTTCTGTGACACTGTGTCAGCGATCGGTACGCCTG ATGGGCATTGTTTTATTCGGGCGCTTGAGTCTGAGAAACCAAATTTCAAT CCTCGCGATTTTGGCCTCCCGGCCTCACTAGTCCTTTTTTGTCGTGTTTC GGCATTGGCGCCTTTGATTTGTAAAAAGCAGACCTTGGAAAATGGTCACT CCGGTTTTTCGAGGCCAAAAAACGTTAAACAGGTACCCCCCTAGGCCCCT CTCCGGAGGTCGATATCAGCTAAATCTGTCAAATTTTGCGAACCACTTGT CATCAAAATCGCCAACTTGACCCCCTGCCAGATGAACCGGCTCAAAAGCC ACTGTCATCGTTCGTTTGTTTTCTAAATCTTCACTAGGGGCGTGTCTGCC AAGCACCACTCTGCGCCGCCTCAGGAGAGGTCGAAGCCGTTCTTGCACTG TACCGTGTACGAAAACGACTTCAGAGACTGTTCGAAGGTTGGTCGTGAGT CGTTTGAATTGATCAATGGTTGACCTGATCGGAAAACCTAGCATGCGATA ATTTGGAATAGTAAGGTGGGGAACCGTGTAAAAGTACAACGCTACGACAC CCGTAGGGTACATTATGTTTGTGTGCCTTTCCGAACTCGAAACAACCCAT AAGTCGTCGTGGTGTATGGCATACTGTACGGTATCTTGCCGAACAAACCC GACAAAAAAAGGAAGCGGACAAGCTAGACAAGCAGGGAGAGAGCGCTTTC AAGAGGGAGTTTGATACATTGGAAAGTGGCACCGGGAATGTAGATATTCG CGACGTACCACGGCTGATTGAAGGCGTACTCGGTCGCGACGCTCGACCTT GGATCAAGGATCGCATCCTCAAGGCGCTCGAGGAAAACCGAAATGGGAAA GTAAGTGCCAACTCAGACTCGACAATGAAACGACACAGTTTGCGAGGGAA ATTTCAGCAAGCAACAATACGATAGACGACTTCTGGCGCAGGTTCGATGT TCAATCGCATTCGATACGTGTGTATATCAATGCAGCCGAGTGTGCTATCG AGAGAAACGTACTGTACCCCCATGGGAATACTTTACTACTGTCAACTTTT GCCAACTGGGACAAATGACCACTGTGCCATAAAGGTTGGCTCTGTTCCGA AACGAACTGCCAGAAGCATATAATGTATCTCTCTCTCTCTCTCTCTCTCT CTCTATATATATATATATATATATTATATATATATATATAGAGAGAGAGA GAGAGAGAGAGATATGCTTGTTCTTGGCTGTGAAAGGAATCCGCTAACCA GGAAAAAACAGCGGGAAAATAGTTGAGGAAATCTACACTGTCAGGTTTCC ATCATGGTACATGATCTTCCTGGCGACGCCTGACGTGTGGTTGGTGGGTC TTTCACCACGTGATCCGTTGCTATATTTCGACTTTTTAGATTACGTGGTT AGAGCTTAAGGAAGGGATGAGCAAGGTTTTGGCGTCTACGAAGAGGGACT TGGTGCACGGAGAAAAGCAGGTTCCAGAGTGGCTAGTCTCTAGCCGAAAG GTACGACAGTACCGTGCCTACAAACAACTACGAGCAGTTACAGTATATGC CTCATTCGCGCCGAAACCAACAAAAGGTAAGAACATGAAAGTAAATGAGG ACCTTTTTTTCAAACGAAGTCGTATTTTGTCCGATTCTTCCGGTTTTTTT CGTTTTTCCAAATTGAAAATCGTGACAGATATCTAGCTCAAAGTTGAGGG AAAAGTGAAGAAATACTGTAGGTGTCACTTTGGTCGCGGTCGTCAATTTG TTCAGCTCGCTATCGCGATTTCAATATTTCGGAAAACGAAAAACTGGAAA AATCGGACAAAAACGACCTTGTTTAGAACGGCCCTAAGCAGAAAAAAAAC AGAGATGCACCCAATATGATCTATGTGTGCCCCCCCGCGCGCTTTGTGCG CGCCATATGCGATGCAGGTGAACCCATCGGTGTCTCAAGGCCAAGCAGTG GAGAGCTGCTACCAGATTGACATAGGCAGGGAAGGTGACATCCCCGGAAA TCGTCGAATCTGGTACAAGACCGGCATGTCATCAACGACGCTTGATCTCT TTAACGGCACTACAAAGGAAACATATCAGGTTCGGGAATTTGAGTTGGTA GACGGGTAAACGGGAAATATGCCGTATATGGGCGGGGGGGTGGGGAAGGA GGTCGCATCGCACACTTGCAGCAGCGCATGTCGCGTCCTGACAGTCTTCT CTAAACAGGTGGTCAGAGGAATACCTGGCCGGACATTGTAAGACTATCCA CGTTCGTTGTGGTTGGAATATAAAAGTTTGCACAAGGGTTTTGCGGTTTA CAACGTGTCAAGATGTTGTCAACCCCTTTGCAGCGTCAATAAAGGACACC CATTTGGCAAGGTAGCTGAAGTTACCTCAGTGGTGACCTGTGCTGACGTA CCACCCATTCGCCGGCGTTGGTAACTGAAGGGTGCATGTGTATGTGTGGC GAGCGGCGAGCGGAGGTACCCTCGGTTCGTTTTGTCAAGGCCCATGGTTT TCCACAGCAGCGAAGCCGTGAAACAATAATACCAGGTTTTGAACAAAATG ATGTCGTTGGTAGCCCTGAAGGGTAGGGATTGACAGACCCGTTCGCGGCA ACCTCAATCGCGTTTCACCCGCGTAAAGCGTCCAGTATAGCATGGCACAC CCTCACCACCCCGTCGCCCCCTCCTTCGGCACGCGATGGTAATATTTTCA GTAGAAAAGGGAGACAAAAAACTTGAGATAACCCCCCCCCCCCGTCCCCC CCCGTCCCCTAACCCCCCAATAGGTTCCGGGGTACGGCGGCTTCATGCCA GCGAGCACGATGAACGCGCGAGCAAGGCAGCACGGTGAAATGCGAGAACC GAGGGTCAAGGCCCTGGACCTGCGACTCTCTTATAGACACAACACTCCGG GATACACGGGCCATGCGCCGGCTTCGGCCTGCAACGACTCGGGCCCAGCT CGCTGTGGAGCCAACTCGCTCACCACCTCTGGCGCGGCCGCCCTGGGTCT CATTTTGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4887:5802..10461-

>mRNA_H-paniculata_contig4887.12028.1 ID=mRNA_H-paniculata_contig4887.12028.1|Name=mRNA_H-paniculata_contig4887.12028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1836bp|location=Sequence derived from alignment at H-paniculata_contig4887:5802..10461- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAGCGGTGTGGCCTACAAGAAGAACCTCATGCAAGCACCAGCCAC
GATGACGACGTGCAGTTCCGAAGCGTTTTCGAACGTTGCAAGGGGGGATT
ACCGTGTGCCAGACAGGCGATGGGGAGCGGTGTGGCCTACAAGAAGAACC
TCATGCAAGCACCAGCCACGATGACGACGTGCAGTTCCGAAGCGTTTTCG
AACGTTGCAAGGGGGGATTACCGTGTGCCAGACAGGCGGGGCGTGTCTGC
CAAGCACCACTCTGCGCCGCCTCAGGAGAGGTCGAAGCCGTTCTTGCACT
GTACCGTGTACGAAAACGACTTCAGAGACTGTTCGAAGGGGCGTGTCTGC
CAAGCACCACTCTGCGCCGCCTCAGGAGAGGTCGAAGCCGTTCTTGCACT
GTACCGTGTACGAAAACGACTTCAGAGACTGTTCGAAGGAAGCGGACAAG
CTAGACAAGCAGGGAGAGAGCGCTTTCAAGAGGGAGTTTGATACATTGGA
AAGTGGCACCGGGAATGTAGATATTCGCGACGTACCACGGCTGATTGAAG
GCGTACTCGGTCGCGACGCTCGACCTTGGATCAAGGATCGCATCCTCAAG
GCGCTCGAGGAAAACCGAAATGGGAAAGAAGCGGACAAGCTAGACAAGCA
GGGAGAGAGCGCTTTCAAGAGGGAGTTTGATACATTGGAAAGTGGCACCG
GGAATGTAGATATTCGCGACGTACCACGGCTGATTGAAGGCGTACTCGGT
CGCGACGCTCGACCTTGGATCAAGGATCGCATCCTCAAGGCGCTCGAGGA
AAACCGAAATGGGAAAATTACGTGGTTAGAGCTTAAGGAAGGGATGAGCA
AGGTTTTGGCGTCTACGAAGAGGGACTTGGTGCACGGAGAAAAGCAGGTT
CCAGAGTGGCTAGTCTCTAGCCGAAAGATTACGTGGTTAGAGCTTAAGGA
AGGGATGAGCAAGGTTTTGGCGTCTACGAAGAGGGACTTGGTGCACGGAG
AAAAGCAGGTTCCAGAGTGGCTAGTCTCTAGCCGAAAGGTGAACCCATCG
GTGTCTCAAGGCCAAGCAGTGGAGAGCTGCTACCAGATTGACATAGGCAG
GGAAGGTGACATCCCCGGAAATCGTCGAATCTGGTACAAGACCGGCATGT
CATCAACGACGCTTGATCTCTTTAACGGCACTACAAAGGAAACATATCAG
GTGAACCCATCGGTGTCTCAAGGCCAAGCAGTGGAGAGCTGCTACCAGAT
TGACATAGGCAGGGAAGGTGACATCCCCGGAAATCGTCGAATCTGGTACA
AGACCGGCATGTCATCAACGACGCTTGATCTCTTTAACGGCACTACAAAG
GAAACATATCAGGTTCCGGGGTACGGCGGCTTCATGCCAGCGAGCACGAT
GAACGCGCGAGCAAGGCAGCACGGTGAAATGCGAGAACCGAGGGTCAAGG
CCCTGGACCTGCGACTCTCTTATAGACACAACACTCCGGGATACACGGGC
CATGCGCCGGCTTCGGCCTGCAACGACTCGGGCCCAGCTCGCTGTGGAGC
CAACTCGCTCACCACCTCTGGCGCGGCCGCCCTGGGTCTCATTTTGTAAG
TTCCGGGGTACGGCGGCTTCATGCCAGCGAGCACGATGAACGCGCGAGCA
AGGCAGCACGGTGAAATGCGAGAACCGAGGGTCAAGGCCCTGGACCTGCG
ACTCTCTTATAGACACAACACTCCGGGATACACGGGCCATGCGCCGGCTT
CGGCCTGCAACGACTCGGGCCCAGCTCGCTGTGGAGCCAACTCGCTCACC
ACCTCTGGCGCGGCCGCCCTGGGTCTCATTTTGTAA
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