mRNA_H-paniculata_contig488.12016.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig488.12016.1
Unique NamemRNA_H-paniculata_contig488.12016.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig488.12016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig488contigH-paniculata_contig488:16255..17741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size524
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930442.3697448-CDS-H-paniculata_contig488:16255..167261622930442.3697448-CDS-H-paniculata_contig488:16255..16726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig488 16256..16726 -
1691481294.227283-CDS-H-paniculata_contig488:16255..167261691481294.227283-CDS-H-paniculata_contig488:16255..16726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig488 16256..16726 -
1622930442.389832-CDS-H-paniculata_contig488:17690..177411622930442.389832-CDS-H-paniculata_contig488:17690..17741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig488 17691..17741 -
1691481294.2416103-CDS-H-paniculata_contig488:17690..177411691481294.2416103-CDS-H-paniculata_contig488:17690..17741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig488 17691..17741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig488.12016.1prot_H-paniculata_contig488.12016.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig488 16256..17741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig488.12016.1

>prot_H-paniculata_contig488.12016.1 ID=prot_H-paniculata_contig488.12016.1|Name=mRNA_H-paniculata_contig488.12016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
VVVPSAAELADKLVEVARLWAPILSEGDASSIVKVNKPVSPRRGRRSLSP
PVAGRRAGASKSPSVVPSRIKDKNNGKGPFAAADAARPVAAAPVVAVDAT
EIDGIGTGCNISSVCCSISDVATTDDLLKETLDAKIKAKTLALWLRRGND
VSLSAVTDDCSKANDNSGSRGGGR
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mRNA from alignment at H-paniculata_contig488:16255..17741-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig488.12016.1 ID=mRNA_H-paniculata_contig488.12016.1|Name=mRNA_H-paniculata_contig488.12016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1487bp|location=Sequence derived from alignment at H-paniculata_contig488:16255..17741- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTTGTTCCATCCGCTGCGGAGCTCGCGGACAAGCTGGTTGAAGTCGC
GGTGAGTCGTTTTGGCCGGGTCTGTCATAAGGCGGGCACTCGTTAATTTA
CATTTTTTTTTGTAAGTATGACATGGACATAGAACCAATCAGTTTGGTTC
CGTCACATGCTTTGTATTCGAGTAATAGGCTAGTGGGCCGGTGGCTTACG
AGGACTGTTTTATGTCTTCAACTGGTTAGGGGTCGACCATTAGGTATAGT
TATGGTTCGCCCATAAAAAGACGGTTCTACCGCGGCACACTTCGAATTGG
GTGCCTGCGGTCTGAGGTCATTTTTCCGATTTTGCTATTTGTAAAGTGTC
AAGATATCGGTGGGGGGCCCCTGCCCTCCAGTGCGAGCTAGCCTTTATCC
CAGCCTGGGTTCACACGATTTGGCACCGAGCATGTAGAAAAAGGCCATCT
GTGATGGAACTCCGAATTACAGGTTCCGTGACGCAATTGGAGCCATGTCG
TCGTCGCCTATGCTCAAAGATTTGGTCATACACGTGGTGTGCTGTGGCGT
GATGCTGTTGGCATTGAAGACCGAGCGTTATAGTGTTAGCCGGGTGAAGT
TTGTTCATCTGTTGAAACCGTTTGGGCAATAGAGGCTGACTGGCCCGAGA
TAGTCAAGGCGAGTTAAGTGCGCGTATCTACAATAGTGCCATCGCCAAGA
ATGACCCGAGGTCGTTTTTCTCGGTTGTCTTCGCTCGAGCTTGCCATTCA
TTGAAAAGGCATCCATACGTCGAAATCGCTTTTTGGTATCCGAATTGGTA
AATGTGTTCTCATCGTGTGTTCGACAGACAAAATAGAGACCTGCCGCCGA
TCCACCGACACGTGTGAACTATGATCCTCTTCCCTTAAGCTCAGTTTGTG
GATAAGCAATCCAGCAACTTGAAGATCACCCAATTTCCTTACTCGCCTTG
CCCTTCCGCCCACTATCAATCCCTATTTGTGGTACATCCTCTGCCTGGCT
TGGACATGATTTCAGCGACTGTGGGCCCCAATTCTCAGTGAGGGGGATGC
TTCTTCCATTGTCAAGGTCAACAAACCGGTATCACCGCGTCGGGGGCGGC
GCAGCTTGTCTCCTCCTGTCGCTGGACGGCGTGCCGGAGCGAGCAAATCG
CCGTCGGTGGTGCCCTCCAGGATCAAGGACAAGAACAACGGCAAGGGGCC
CTTTGCCGCTGCAGACGCAGCTCGGCCTGTAGCTGCAGCGCCTGTCGTTG
CAGTCGACGCTACAGAGATTGATGGCATCGGTACTGGTTGTAATATTAGC
AGTGTTTGTTGTAGTATCAGTGACGTTGCTACTACTGATGATCTTCTGAA
AGAGACGTTGGACGCGAAAATCAAGGCCAAGACTCTAGCGTTGTGGCTGC
GGCGGGGGAACGATGTGTCTCTATCGGCGGTCACCGATGACTGCTCTAAG
GCCAATGACAACAGCGGCAGTCGCGGTGGTGGGAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig488:16255..17741-

>mRNA_H-paniculata_contig488.12016.1 ID=mRNA_H-paniculata_contig488.12016.1|Name=mRNA_H-paniculata_contig488.12016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig488:16255..17741- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTTGTTCCATCCGCTGCGGAGCTCGCGGACAAGCTGGTTGAAGTCGC
GGTGGTTGTTCCATCCGCTGCGGAGCTCGCGGACAAGCTGGTTGAAGTCG
CGCGACTGTGGGCCCCAATTCTCAGTGAGGGGGATGCTTCTTCCATTGTC
AAGGTCAACAAACCGGTATCACCGCGTCGGGGGCGGCGCAGCTTGTCTCC
TCCTGTCGCTGGACGGCGTGCCGGAGCGAGCAAATCGCCGTCGGTGGTGC
CCTCCAGGATCAAGGACAAGAACAACGGCAAGGGGCCCTTTGCCGCTGCA
GACGCAGCTCGGCCTGTAGCTGCAGCGCCTGTCGTTGCAGTCGACGCTAC
AGAGATTGATGGCATCGGTACTGGTTGTAATATTAGCAGTGTTTGTTGTA
GTATCAGTGACGTTGCTACTACTGATGATCTTCTGAAAGAGACGTTGGAC
GCGAAAATCAAGGCCAAGACTCTAGCGTTGTGGCTGCGGCGGGGGAACGA
TGTGTCTCTATCGGCGGTCACCGATGACTGCTCTAAGGCCAATGACAACA
GCGGCAGTCGCGGTGGTGGGAGGCGACTGTGGGCCCCAATTCTCAGTGAG
GGGGATGCTTCTTCCATTGTCAAGGTCAACAAACCGGTATCACCGCGTCG
GGGGCGGCGCAGCTTGTCTCCTCCTGTCGCTGGACGGCGTGCCGGAGCGA
GCAAATCGCCGTCGGTGGTGCCCTCCAGGATCAAGGACAAGAACAACGGC
AAGGGGCCCTTTGCCGCTGCAGACGCAGCTCGGCCTGTAGCTGCAGCGCC
TGTCGTTGCAGTCGACGCTACAGAGATTGATGGCATCGGTACTGGTTGTA
ATATTAGCAGTGTTTGTTGTAGTATCAGTGACGTTGCTACTACTGATGAT
CTTCTGAAAGAGACGTTGGACGCGAAAATCAAGGCCAAGACTCTAGCGTT
GTGGCTGCGGCGGGGGAACGATGTGTCTCTATCGGCGGTCACCGATGACT
GCTCTAAGGCCAATGACAACAGCGGCAGTCGCGGTGGTGGGAGG
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