mRNA_H-paniculata_contig4874.12008.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4874.12008.1
Unique NamemRNA_H-paniculata_contig4874.12008.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4874.12008.1 vs. uniprot
Match: D8LNP3_ECTSI (ARL2_Bind_BART domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP3_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 8.220e-70
Identity = 124/185 (67.03%), Postives = 144/185 (77.84%), Query Frame = 1 
Query:   10 EEEGKGGEEPDDGEQGGLLGKAIKHCWSNDFLDVFRAYFRKHGEKFEVMAEGKTEEHSLEYQELFNEYLLIFEGKLEDFIEREGSTIGEFYTVIRDHQGSNDPKVQLFIDCLLASANYDSFFSVMKKEGQKSLRQKRQ-GNTAKPTAAAEGKDSRN-------SIGEGKQTETWRTSGDEERPYK 540
            E +G+GG E D      LL KAIKHCWS++FLDVFRAYFRKH E FEVMA+GK+EEH+LEYQELFNEYLLIFEGKLE+FIEREGSTI EFY VIRDHQ + DP+VQLFI+CLLASA+YDSFF+VMKKE +KSLR+KR  G  +KPTA +EGK+  +       S GEGK +E  R    E R YK
Sbjct:   12 ESKGQGGGEED------LLAKAIKHCWSDNFLDVFRAYFRKHAEVFEVMADGKSEEHALEYQELFNEYLLIFEGKLEEFIEREGSTINEFYNVIRDHQTNPDPQVQLFINCLLASADYDSFFNVMKKEAEKSLRKKRHLGQESKPTAGSEGKEPDSVPRGGVPSTGEGKYSEDDRRHSGE-RSYK 189
[Close]
BLAST of mRNA_H-paniculata_contig4874.12008.1 vs. uniprot
Match: A0A835ZDD4_9STRA (ARL2_Bind_BART domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD4_9STRA)

HSP 1 Score: 170 bits (431), Expect = 3.900e-50
Identity = 84/121 (69.42%), Postives = 97/121 (80.17%), Query Frame = 1 
Query:   46 GEQGGLLGKAIKHCWSNDFLDVFRAYFRKHGEKFEVMAEGKTEEHSLEYQELFNEYLLIFEGKLEDFIEREGSTIGEFYTVIRDHQGSNDPKVQLFIDCLLASANYDSFFSVMKKEGQKSL 408
            GE+ GLL +AIK+CWSN+FLDVFRAYFRKH   FE +AE KTEEH L +QELF EYL IFEG LEDFIEREG+T  +FY  IRD Q S DP +QLFI CLLASA+YDSFF+VM KE ++ L
Sbjct:   13 GEEKGLLQRAIKYCWSNNFLDVFRAYFRKHAHHFERIAEEKTEEHDLVFQELFQEYLGIFEGTLEDFIEREGATQEQFYAAIRDAQSSTDPSIQLFIRCLLASADYDSFFNVMVKESRRQL 133
[Close]
BLAST of mRNA_H-paniculata_contig4874.12008.1 vs. uniprot
Match: A0A7R9YCX8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCX8_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.160e-31
Identity = 61/121 (50.41%), Postives = 82/121 (67.77%), Query Frame = 1 
Query:   61 LLGKAIKHCWSNDFLDVFRAYFRKHGEKFEVMAEGKTEEHSLEYQELFNEYLLIFEGKLEDFIEREGSTIGEFYTVIRDHQGSN-DPKVQLFIDCLLASANYDSFFSVMKKEGQKSLRQKR 420
            L+ KA+ +CWS+ FLDVFR+YFRKH   F   AEGKTEEH LE+QELF EYL ++E  LEDF+    ++  + Y  +   QG+   P V +F+DCLLAS +Y+SF  VM +E ++  RQ R
Sbjct:   58 LIRKAMAYCWSSSFLDVFRSYFRKHAGVFSDFAEGKTEEHDLEFQELFREYLDLYESTLEDFLRDADASSQDLYRDVAALQGTKMAPDVAIFVDCLLASMDYESFLKVMTREARQQSRQAR 178
[Close]
BLAST of mRNA_H-paniculata_contig4874.12008.1 vs. uniprot
Match: A0A7S2UYU1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYU1_9STRA)

HSP 1 Score: 119 bits (297), Expect = 8.130e-30
Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 1 
Query:   52 QGGLLGKAIKHCWSNDFLDVFRAYFRKHGEKFEVMAEGKTEEHSLEYQELFNEYLLIFEGKLEDFIEREGSTIGEFYT-VIRDHQGSNDPKVQLFIDCLLASANYDSFFSVM 384
            +GG L K +K+CW N+FLDVFR YF++H   F   AEG+TEEH L +QELF +YL ++E  L DF+ +EG +  EFY  V    + + DP  + FI CLLAS +Y+SFF VM
Sbjct:   59 EGGALEKVMKYCWDNEFLDVFRNYFKEHAYHFTEYAEGRTEEHDLAWQELFEDYLKLYEDTLSDFLRQEGYSDKEFYAEVAAAKETATDPATKQFIHCLLASCDYNSFFRVM 170
[Close]
BLAST of mRNA_H-paniculata_contig4874.12008.1 vs. uniprot
Match: A0A7S3ZUL8_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUL8_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.840e-26
Identity = 58/125 (46.40%), Postives = 82/125 (65.60%), Query Frame = 1 
Query:   40 DDGEQGGLLGKAIKHCWSNDFLDVFRAYFRKHGEKF---EVMAEGKTEEHSLEYQELFNEYLLIFEGKLEDFIEREGSTIGEFYTVIRDHQGSN-DPKVQLFIDCLLASANYDSFFSVMKKEGQK 402
            DDG+   ++ KAI +CWSN FLDVFR YFR + E F       + ++ EH+LE+ +LF  YL ++E  L +++EREG    +FY  ++  Q +  DPKVQ F+ CLLAS +YDSF+SVM +E  K
Sbjct:   16 DDGDIPPIVQKAITYCWSNGFLDVFRKYFRDNAEPFIGYPPKRDMESAEHTLEHWDLFQTYLKLYEDTLNEWLEREGVENAQFYKDVQHVQDTTTDPKVQEFVYCLLASCDYDSFYSVMVREAMK 140
[Close]
BLAST of mRNA_H-paniculata_contig4874.12008.1 vs. uniprot
Match: A0A7S2AWK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AWK6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 8.790e-25
Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = 1 
Query:   61 LLGKAIKHCWSNDFLDVFRAYFRKHGEKFEVMAEGK-TEEHSLEYQELFNEYLLIFEGKLEDFIERE-GSTIGEFYTVIRDHQG--SNDPK-----VQLFIDCLLASANYDSFFSVMKKEGQK 402
            LL +A+ +CWSN+FLDVFR YFR H   F  M  G  + EHSLE   +F EYL ++E +L ++IE + G +  EFY  + D +   + DP+       LFI+CL+ASA+YDSF+ VM +E QK
Sbjct:   27 LLSQALTYCWSNEFLDVFRQYFRDHASDFRGMKVGMGSSEHSLEQHAVFQEYLQLYEDRLSEYIESQLGGSSKEFYEELADAKDVQARDPESCDAGTALFIECLVASADYDSFYKVMVREAQK 149
[Close]
BLAST of mRNA_H-paniculata_contig4874.12008.1 vs. uniprot
Match: A0A7S2HVG4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HVG4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 8.760e-21
Identity = 53/126 (42.06%), Postives = 74/126 (58.73%), Query Frame = 1 
Query:   61 LLGKAIKHCWSNDFLDVFRAYFRKHGEKFEVMAEGK---------TEEHSLEYQELFNEYLLIFEGKLEDFIERE----GSTIGEFYTVIRDHQGSN--DPKVQLFIDCLLASANYDSFFSVMKKE 393
            +L  A+KHCW+N+FL VFR +F+ H   F  M             T  HS +  E F EYL ++E +L D+IE      G+T+ EFY  ++  Q  +  D   Q+FIDCL+ASA+YDSF+SVM +E
Sbjct:   34 ILESALKHCWTNNFLGVFRQFFKDHAAHFRGMKRKDPLTGEWSLDTGTHSHQQHEDFEEYLKLYESQLADYIENHPDGPGATVTEFYRELKAAQECDFADEGTQMFIDCLVASADYDSFYSVMVRE 159
[Close]
BLAST of mRNA_H-paniculata_contig4874.12008.1 vs. uniprot
Match: A0A5D6XH63_9STRA (Cilia- and flagella-associated protein 36 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XH63_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.160e-15
Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = 1 
Query:   61 LLGKAIKHCWSNDFLDVFRAYFRKHGEKFEVMAEGKTE---EHSLEYQELFNEYLLIFEGKLEDFIEREGSTIGEFYT----VIRDHQGS--NDPKVQLFIDCLLASANYDSFFSVMKKEGQ 399
            ++ +A ++C S+ F+ VF ++ R+H E F   AEGK +   EH  EY+EL + YL +FEG+L DF+E E   I EF+     V+  H  +   + +   F+D LLAS +YD F+++M  E +
Sbjct:    7 IVKRAAEYCSSDKFVRVFDSFAREHAEVFADAAEGKADDDVEHKHEYKELHDRYLQLFEGELTDFVESEAVAIEEFFHECRGVVNGHFTALFEEHQYAWFVDRLLASMDYDHFYTLMVNEAR 128
[Close]
BLAST of mRNA_H-paniculata_contig4874.12008.1 vs. uniprot
Match: A0A5D6XLI6_9STRA (Cilia- and flagella-associated protein 36 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLI6_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.340e-13
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 1 
Query:   61 LLGKAIKHCWSNDFLDVFRAYFRKHGEKF--EVMAEGKTEEHSLEYQELFNEYLLIFEGKLEDFIEREGSTIGEFYTVIRDHQGS------NDPKVQLFIDCLLASANYDSFFSVMKKEGQKSLRQK 417
            ++ +A  +C S  F  +F  + R+H E F   + A+G   EH  EY+E+ ++YL +FE +L DF+E EGSTI EF+   R    +      ++ K   F++ LLAS  Y+ FFS+M  E ++ LR+K
Sbjct:    6 VIERAAIYCSSTKFERIFDDFAREHAETFLDALDAKGGDVEHKHEYKEIHDKYLRLFEEELSDFVESEGSTIDEFFRECRAVVNAKVTGYFDEHKYVWFVEHLLASMEYELFFSLMINEARR-LRRK 131
[Close]
BLAST of mRNA_H-paniculata_contig4874.12008.1 vs. uniprot
Match: A0A7S0ST95_9STRA (Cilia- and flagella-associated protein 36 n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0ST95_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.540e-13
Identity = 38/111 (34.23%), Postives = 60/111 (54.05%), Query Frame = 1 
Query:   79 KHCWSNDFLDVFRAYFRKHGEKFEVMAEGKTEEHSLEYQELFNEYLLIFEGKLEDFIEREGSTIGEFYTVIRD---HQGSNDPKVQLFIDCLLASANYDSFFSVMKKEGQK 402
            +HCWSN+F++ F+ +   H   F       +EE +LEY ELF  YL ++E  L D+I     T+ EFY  + D        D K+  F++ L+A  +Y SF+ +M +  +K
Sbjct:    1 RHCWSNNFMNSFKDFINDHCILFINAPTTPSEEQNLEYYELFQRYLKLYETILSDYINSLDCTVEEFYEQLADILNDTNIKDKKLLHFVNYLIACTDYPSFYKIMTRAARK 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4874.12008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNP3_ECTSI8.220e-7067.03ARL2_Bind_BART domain-containing protein n=2 Tax=E... [more]
A0A835ZDD4_9STRA3.900e-5069.42ARL2_Bind_BART domain-containing protein n=1 Tax=T... [more]
A0A7R9YCX8_9STRA2.160e-3150.41Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2UYU1_9STRA8.130e-3050.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3ZUL8_9STRA3.840e-2646.40Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2AWK6_9STRA8.790e-2546.34Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2HVG4_9STRA8.760e-2142.06Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A5D6XH63_9STRA1.160e-1537.70Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
A0A5D6XLI6_9STRA2.340e-1337.01Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
A0A7S0ST95_9STRA6.540e-1334.23Cilia- and flagella-associated protein 36 n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4874contigH-paniculata_contig4874:3492..6530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue2e-38
Seed eggNOG ortholog2880.D8LNP3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.The ARF-like 2 binding protein BART
EggNOG OGs2C07X@1,2S28G@2759
Ec32 ortholog descriptionADP-ribosylation factor-like 2-binding protein, domain
Ec32 orthologEc-08_006370.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size690
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4874.12008.1prot_H-paniculata_contig4874.12008.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4874 4811..6383 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930441.2494328-UTR-H-paniculata_contig4874:3491..36411622930441.2494328-UTR-H-paniculata_contig4874:3491..3641Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4874 3492..3641 +
1691481293.724771-UTR-H-paniculata_contig4874:3491..36411691481293.724771-UTR-H-paniculata_contig4874:3491..3641Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4874 3492..3641 +
1622930441.269145-UTR-H-paniculata_contig4874:4807..48101622930441.269145-UTR-H-paniculata_contig4874:4807..4810Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4874 4808..4810 +
1691481293.736293-UTR-H-paniculata_contig4874:4807..48101691481293.736293-UTR-H-paniculata_contig4874:4807..4810Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4874 4808..4810 +
1622930441.3196335-UTR-H-paniculata_contig4874:6383..65301622930441.3196335-UTR-H-paniculata_contig4874:6383..6530Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4874 6384..6530 +
1691481293.7694595-UTR-H-paniculata_contig4874:6383..65301691481293.7694595-UTR-H-paniculata_contig4874:6383..6530Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4874 6384..6530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930441.281543-CDS-H-paniculata_contig4874:4810..49071622930441.281543-CDS-H-paniculata_contig4874:4810..4907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4874 4811..4907 +
1691481293.7466323-CDS-H-paniculata_contig4874:4810..49071691481293.7466323-CDS-H-paniculata_contig4874:4810..4907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4874 4811..4907 +
1622930441.2936556-CDS-H-paniculata_contig4874:5576..56471622930441.2936556-CDS-H-paniculata_contig4874:5576..5647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4874 5577..5647 +
1691481293.7545106-CDS-H-paniculata_contig4874:5576..56471691481293.7545106-CDS-H-paniculata_contig4874:5576..5647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4874 5577..5647 +
1622930441.307568-CDS-H-paniculata_contig4874:6161..63831622930441.307568-CDS-H-paniculata_contig4874:6161..6383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4874 6162..6383 +
1691481293.7620585-CDS-H-paniculata_contig4874:6161..63831691481293.7620585-CDS-H-paniculata_contig4874:6161..6383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4874 6162..6383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4874.12008.1

>prot_H-paniculata_contig4874.12008.1 ID=prot_H-paniculata_contig4874.12008.1|Name=mRNA_H-paniculata_contig4874.12008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
MAEGKTEEHSLEYQELFNEYLLIFEGKLEDFIEREGSTIGEFYTVIRDHQ
GSNDPKVQLFIDCLLASANYDSFFSVMKKEGQKSLRQKRQGNTAKPTAAA
EGKDSRNSIGEGKQTETWRTSGDEERPYK*
back to top

mRNA from alignment at H-paniculata_contig4874:3492..6530+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4874.12008.1 ID=mRNA_H-paniculata_contig4874.12008.1|Name=mRNA_H-paniculata_contig4874.12008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3039bp|location=Sequence derived from alignment at H-paniculata_contig4874:3492..6530+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGGAAGTGAAGAGGAGGGCAAAGGGGGCGAGGAGCCGGATGATGGTGA
GCAAGGAGGTTTGTTGGGCAAGGCGATAAAGCACTGCTGGAGCAACGACT
TTCTTGACGTGTTCAGAGCGTATTTCCGCAAGCACGGGGAAAAGTTTGAG
GTCAGTGGCCAAGTCAGCACCAATGGAACGTAACGTTGCACATATAGGAA
TTAGTTTCACCCATGTTTATTAGTTTTTCTGCAGGCAACGATATACAAAA
CTTTGGCTGCCAGACCCAGAGCTTAGAATTGGCTGTCAAACAAAATAATG
AAAACGTTTGTCAGGTGGTGCCGCATTGATGGAACTTTAACTTTGCACGG
TTAGGACCGATCAGATAATCCACAGCTGGTACGATTCATCTGTACCGATG
AATCGTGATATGTGCACACCACTTTTGATACTTACCTGTCTGTGAGACGA
GGATCCATCCAACTAGTGTTAACAGAATAGATGACGAACGAGGAAGTCTC
CTATCTCTATCAGCTTTCTTTCACGCGCAGGTTAGCGGGACAGTGGGTTG
CTTAAGTCTGAGTCTGTGCTATTAACACCCCATGCTGTTTAGCTTCTCCA
GGCAGTGCTATACAGTAGTGTATACCAACACAAACCATGACACACGGTCA
ATGTTCTCCTGTTCGTCTTTATTATCGAAGTCTCAGTGTTGATCGACTTC
CACTACTGCTTCGTGCTGGAAGTGCGCCTCAAGAAAGGACTAATGCAACT
TTACGATCCATACATGTTCCTGGACTAGCGGTCCGCACATTGTCTGTTTT
GCCTGGTACCTGTTTGCTCGCAAATTGATTCGCATCGTATGACAGATCGT
AAGCACATAGTTGGCCACAACTGATTCTTACGATTCGCATCGTCGGAAAA
AAGAAGTATATGAGGAACCCGTACGATCTGGGCCGTTAGCCCCTGTTTAC
CCAAACCTGGTTCATGCAAGCCGACTCGCATCCATGTCGATCGGCCCGAA
CCGTGCAATTGTGCTTCCTATTTATAAGTAGGTTGCTGACAAATGGCGTG
GACATTATGCGTCAACATTGAAAGCCCCGAGGGGGACAACACGTAAACTC
GGTCAACGGCTTACCACACCTACGCCGGACGCGATGAGAGCGTACGTGCG
GCCTGACCGGCAGCTTTTGTCGAGTCCCGTGTGGCGTACGTCGGAATGGG
ACTAAGGCCACCAAAGGTCCGCCTGGGTAACACAGACAACACGAGTCTGT
TAATATAATCTATATTCAGCCTTTGCACTATACTACACTGTATAACACCC
CGTGGTTGGTGGACAGGTGATGGCGGAAGGGAAGACGGAGGAGCACAGCC
TCGAGTATCAGGAACTCTTCAACGAATACTTGCTAATATTCGAGGGAAAA
CTGGAGGACTTTATAGGTAAGGCAAAACACCAACTGCCGTTAACTCTTCT
GGCACTCCAAGTACCCGTACTGGCTGATATAATCACCTTGCAGAATAAGA
TTGCGCCTTAAGAGAACCTCTCTTGAGTGCTAATTTTACAGCTTCAATGG
GATGTACAGGAATGATCGAACAGCGCCACCCATCCTTCCGTGCATGTGCC
AGCAATTTCGAGGAAGCACTACGATGACAGGAAGAATCACATCGTGTAGT
GACTTGCTGCTTGGGTTGACGAGCAATAGTTCAGAGTAATCGCGATTTAG
ACACAGTTGACCACAGTTTATATGCTCATTCAAGATCTGTTTGCGAAACG
GAAATATGCTGCATCGAATTCCATTCGGTGTTTTTTTCTTGTTACACTCG
GTCGTCTCGGATAACCGCATTTGGTTGAGATTTTAAGGTCTCGCGTAGTC
TTACATTGTTACATTGTTTATGTAGATTAGGATGGGGCACCATACGAGAA
ATGGCATCCATGTAGAGTAGAATGTTCGCTTCAAAAAATCCCAGTCACAA
TAAAATATCAAGGGATGACCTTTTAACAGCTGCTGTAGCTTCGCGTTGGT
CAAAAGCACATTTAAAGGTTGAATGAAATGTACTCGGAAGCCATTGCCAG
TCCTGAGACCTTCCGTTCAATATTACCGTTTACAGAGAGGGAAGGAAGCA
CGATTGGTGAATTCTACACAGTAATCCGAGACCATCAAGGCAGCAACGAC
CCAAAGGTGCGAAAGTAGCTGTGGCATACAATATTTGATTCCCCTGGCTG
TAGTCACGGAGTTTCTACCTTGGGCAGTTTTCTTACAGTATCAATTGTTG
GAACGCGCATATTTCCGCTTCTTGTTGAAGACTTGAAACAAGAGCCAAGC
TCCGTGTAAACAGTGTCGTAGTAGGTGAGGGTCAATTCATGTTCTAAAGC
TCCCAGGTGTGATGGAGAAGAGGAGGAGGGAAGGGGAGGGGAGGGGGGTG
AGATCCCCTCTCCGTAGAGTACTATTGTTCAGAAGCACCATGTTAGGCTA
CCAAAATCCATACAGAGGTTACAAAATCATAATCATGAAGGGGAGTACTA
CCCTAACATATTGTGCCCTGTGGATGAGGCCATGAGATCGCTAGTTTACC
TTTGTGAAATATTGGCATCATATTTTAGCGAAGCTGTTCCGTACACCTCT
GTGTAGCAGGACACGATCCAGAGCATATCAATCTTTACCAGTCACCAAAT
ATTTTGTTATCACGTTTCAGGTGCAGCTATTCATCGACTGCCTGTTGGCA
TCGGCTAACTATGATAGCTTCTTCAGCGTCATGAAGAAGGAAGGACAAAA
GTCCCTGAGACAGAAGCGCCAAGGAAATACCGCGAAACCTACAGCTGCTG
CGGAGGGGAAGGATTCGAGAAATTCTATAGGAGAAGGAAAACAGACAGAA
ACGTGGCGCACTTCAGGGGATGAAGAACGTCCCTATAAGTAGTCCAACGA
GTGCTTCTTATAGCTCAGGCCGCTAGTATTCCATCCAACAAGACAAGATC
CGTTGTTGGTAGGTGCACTACATACGCAGCCGTGCAAATGACGTCATGAT
AATATGTCTGGCTGAACATGGTAGCTATAGAATGACCCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4874:3492..6530+

>mRNA_H-paniculata_contig4874.12008.1 ID=mRNA_H-paniculata_contig4874.12008.1|Name=mRNA_H-paniculata_contig4874.12008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig4874:3492..6530+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGAAGGGAAGACGGAGGAGCACAGCCTCGAGTATCAGGAACTCTT
CAACGAATACTTGCTAATATTCGAGGGAAAACTGGAGGACTTTATAGATG
GCGGAAGGGAAGACGGAGGAGCACAGCCTCGAGTATCAGGAACTCTTCAA
CGAATACTTGCTAATATTCGAGGGAAAACTGGAGGACTTTATAGAGAGGG
AAGGAAGCACGATTGGTGAATTCTACACAGTAATCCGAGACCATCAAGGC
AGCAACGACCCAAAGAGAGGGAAGGAAGCACGATTGGTGAATTCTACACA
GTAATCCGAGACCATCAAGGCAGCAACGACCCAAAGGTGCAGCTATTCAT
CGACTGCCTGTTGGCATCGGCTAACTATGATAGCTTCTTCAGCGTCATGA
AGAAGGAAGGACAAAAGTCCCTGAGACAGAAGCGCCAAGGAAATACCGCG
AAACCTACAGCTGCTGCGGAGGGGAAGGATTCGAGAAATTCTATAGGAGA
AGGAAAACAGACAGAAACGTGGCGCACTTCAGGGGATGAAGAACGTCCCT
ATAAGTAGGTGCAGCTATTCATCGACTGCCTGTTGGCATCGGCTAACTAT
GATAGCTTCTTCAGCGTCATGAAGAAGGAAGGACAAAAGTCCCTGAGACA
GAAGCGCCAAGGAAATACCGCGAAACCTACAGCTGCTGCGGAGGGGAAGG
ATTCGAGAAATTCTATAGGAGAAGGAAAACAGACAGAAACGTGGCGCACT
TCAGGGGATGAAGAACGTCCCTATAAGTAG
back to top