mRNA_H-paniculata_contig4869.12002.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4869.12002.1
Unique NamemRNA_H-paniculata_contig4869.12002.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4869.12002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4869contigH-paniculata_contig4869:5497..5817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size322
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930440.3855987-CDS-H-paniculata_contig4869:5496..57991622930440.3855987-CDS-H-paniculata_contig4869:5496..5799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4869 5497..5799 +
1691481293.2789814-CDS-H-paniculata_contig4869:5496..57991691481293.2789814-CDS-H-paniculata_contig4869:5496..5799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4869 5497..5799 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930440.4027407-UTR-H-paniculata_contig4869:5799..58171622930440.4027407-UTR-H-paniculata_contig4869:5799..5817Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4869 5800..5817 +
1691481293.287437-UTR-H-paniculata_contig4869:5799..58171691481293.287437-UTR-H-paniculata_contig4869:5799..5817Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4869 5800..5817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4869.12002.1prot_H-paniculata_contig4869.12002.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4869 5497..5799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4869.12002.1

>prot_H-paniculata_contig4869.12002.1 ID=prot_H-paniculata_contig4869.12002.1|Name=mRNA_H-paniculata_contig4869.12002.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
AHGGNWGTRYLYQSTAKYVLIKRPPHTGSKPTGHEIFNSKTLGIRAKGYT
PLLHKLCLTVYPALSPETPSEEQTLRATIVRPGIFQVTPNSFWHLFLALL
*
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mRNA from alignment at H-paniculata_contig4869:5497..5817+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4869.12002.1 ID=mRNA_H-paniculata_contig4869.12002.1|Name=mRNA_H-paniculata_contig4869.12002.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at H-paniculata_contig4869:5497..5817+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCACGGAGGTAACTGGGGAACTAGATACTTGTATCAGTCTACTGCAAA
ATACGTTCTTATAAAACGGCCACCTCACACCGGGTCAAAACCTACTGGAC
ATGAAATATTCAACTCAAAAACGTTGGGCATCAGAGCGAAGGGTTACACA
CCTCTGTTGCACAAACTCTGCTTGACGGTATACCCCGCACTGTCGCCCGA
AACTCCTTCTGAAGAGCAAACCCTGCGAGCCACCATTGTACGACCAGGAA
TTTTCCAAGTCACACCCAACAGCTTTTGGCATCTTTTTCTTGCCCTACTA
TAACCTAAAAGGCTGAAACAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4869:5497..5817+

>mRNA_H-paniculata_contig4869.12002.1 ID=mRNA_H-paniculata_contig4869.12002.1|Name=mRNA_H-paniculata_contig4869.12002.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig4869:5497..5817+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCACGGAGGTAACTGGGGAACTAGATACTTGTATCAGTCTACTGCAAA
ATACGTTCTTATAAAACGGCCACCTCACACCGGGTCAAAACCTACTGGAC
ATGAAATATTCAACTCAAAAACGTTGGGCATCAGAGCGAAGGGTTACACA
CCTCTGTTGCACAAACTCTGCTTGACGGTATACCCCGCACTGTCGCCCGA
AACTCCTTCTGAAGAGCAAACCCTGCGAGCCACCATTGTACGACCAGGAA
TTTTCCAAGTCACACCCAACAGCTTTTGGCATCTTTTTCTTGCCCTACTA
TAAGCGCACGGAGGTAACTGGGGAACTAGATACTTGTATCAGTCTACTGC
AAAATACGTTCTTATAAAACGGCCACCTCACACCGGGTCAAAACCTACTG
GACATGAAATATTCAACTCAAAAACGTTGGGCATCAGAGCGAAGGGTTAC
ACACCTCTGTTGCACAAACTCTGCTTGACGGTATACCCCGCACTGTCGCC
CGAAACTCCTTCTGAAGAGCAAACCCTGCGAGCCACCATTGTACGACCAG
GAATTTTCCAAGTCACACCCAACAGCTTTTGGCATCTTTTTCTTGCCCTA
CTATAA
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