mRNA_H-paniculata_contig4863.11990.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4863.11990.1 vs. uniprot
Match: D7FWQ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWQ0_ECTSI) HSP 1 Score: 258 bits (659), Expect = 3.350e-82 Identity = 141/236 (59.75%), Postives = 168/236 (71.19%), Query Frame = 1
Query: 130 LKLVLRNGREAHVSCSVESEGLDLLQGRLRAASVKGRGWASRLGFTARTIAVDLGNASVDVGALFHRRAIEFRTPPPSGTAVVVFDAVDFGNFLAHKFVRRATLAGRDFMFQRGDVFVDPVTGLVEFGGRWGDECVRVGLSQGITGAPQRGLVAKVSRVGGRGAAAEGHSTAEGELDALASAMGEYFNTLDLDLDGPRLRFLSLSFEGTSARDGRVKLELSIVVPKLPSVRAVSSF 837
++LVLRNGRE HVSCSV+S+ LDLLQGRLR ASV+GRGWASRLG TAR+I VD+G +DVGALF R ++F PPPSG A+VVF A DFGNFLAH +RR +AGR F+F R V VDP V FGG WG E +R+ LSQ AP LV++V R G H + + DA+AS M E+FN L++DLDGPRL F SLSFEG+ GRVKL L IVV KLPS+RAV+SF
Sbjct: 1 MRLVLRNGRETHVSCSVDSDALDLLQGRLRGASVRGRGWASRLGLTARSIDVDVGIVRLDVGALFRHRVLQFEQPPPSGNAIVVFSAEDFGNFLAHPLIRRTVVAGRSFVFDRQGVVVDPRKRTVAFGGVWGAEKLRIELSQAAARAP---LVSEVVRSVDDG----DHDSGLTDDDAIASDMSEFFNNLEVDLDGPRLSFSSLSFEGSGIEGGRVKLALGIVVRKLPSIRAVASF 229
BLAST of mRNA_H-paniculata_contig4863.11990.1 vs. uniprot
Match: A0A2V0P4A6_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P4A6_9CHLO) HSP 1 Score: 102 bits (255), Expect = 1.770e-21 Identity = 80/250 (32.00%), Postives = 124/250 (49.60%), Query Frame = 1
Query: 94 TAPLIEATACRVLKLVLRNGREAHVSCSVESEGLDLLQGRLRAASVKGRGWASRLGFTARTIAVDLGNASVDVGALFHRRAIEFRTPPPSGTAVVVFDAVDFGNFLAHKFVRRAT---LAGRDFMFQRGDVFVDPVT-----GLVEFGGRW-GDECVRVGLSQGITGAPQRGLVAKVSRVGGRGAAAEGHSTAEGELDALASAMGEYFNTLDLDLDGPRLRFLSLSFE-GTSARDGRVKLELSIVVPKLP 813
TA L+E L+ L+ R V+ + + LL GR+ + +++G GW S L TA+ + +G A++D + R I T P+GTA VVFD VDFGNFL H V A + G F+F R V ++ + GL+ F G W GD + +++G A RG+ A +G G S++ G ++ +G +FN+L +DL+G LR +S++ GT L L + V + P
Sbjct: 61 TATLLERVTSLALRARLKEARS--VAADISCDAFSLLAGRVNSVAIRGEGWRSPLNLTAQLLEATVGAAALDYAQVLLRGRIVL-TNVPTGTARVVFDEVDFGNFLTHPLVTEAAKEAVRGSAFVFDRDSVRLEAPSRERPEGLIFFTGTWRGDNVELLPVARGA--AVGRGVQAHAIALG-----VGGRSSSAGVVE---DELGRFFNSLTVDLEGVELRLMSVTLSAGTGWAGAAADLRLQLTVKRFP 297
BLAST of mRNA_H-paniculata_contig4863.11990.1 vs. uniprot
Match: A0A383VV08_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VV08_TETOB) HSP 1 Score: 92.4 bits (228), Expect = 1.040e-17 Identity = 82/278 (29.50%), Postives = 123/278 (44.24%), Query Frame = 1
Query: 19 SRPFRQRQPSSRNQPLSGGRSMRCSTAPLIEATACRVLKLVLRNGREAHVSCSVESEGLDLLQGRLRAASVKGRGWASRLGFTARTIAVDLGNASVDVGALFHRRAIEFRTPPPSGTAVVVFDAVDFGNFLAHKFVRRAT---LAGRDFMFQRGDVFVDPVT-----GLVEFGGRWGDECVRVGLSQGITGAPQRGLVAKVSRVGGRGAAAEGHSTAEGELDALAS----AMGEYFNTLDLDLDGPRLRFLSLSF-EGTSARDGRVKLELSIVVPKLP 813
SR R SR + + + R TA ++E C L+ L+ R V S+ + LL GR+ + G GW S L TA+ + +G AS+D A+ ++ I T P GTA V+F+A DFGNFL H + A + G F F + V + P + GLVEF G W + R + R L V G+G A + G + A + +F++L +DL G ++ F+SL+ G L L + + K P
Sbjct: 34 SRLIRSSSRCSRGRLATVNTAHRDLTADILENVTCLALRARLKECRA--VKTSISCDTWSLLAGRVNGVKIHGEGWRSPLNLTAQVLEATVGEASLDPSAVLFKQQI-LLTNVPVGTARVMFNAADFGNFLVHPLMTEAAKEAVQGHAFAFDQASVRIQPPSAVPPEGLVEFTGTWRGDGQRYQV---------RLLPVSGGAVFGKGVQAHAMPLSIGARSSSAGIVEDCLSAFFSSLMVDLQGAQMSFMSLAILPGMGFAGAMADLNLRLELKKFP 299
BLAST of mRNA_H-paniculata_contig4863.11990.1 vs. uniprot
Match: A0A7S1SVV4_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SVV4_9CHLO) HSP 1 Score: 74.7 bits (182), Expect = 2.280e-11 Identity = 58/223 (26.01%), Postives = 99/223 (44.39%), Query Frame = 1
Query: 166 VSCSVESEGLDLLQGRLRAASVKGRGWASRLGFTARTIAVDLGNASVDVGALFHRRAIEFRTPPPSGTAVVVFDAVDFGNFLAHKFVRR---ATLAGRDFMFQRGDVFVDPVTG---LVEFGGRWGDECVRVGLSQGITGAPQRGLVAKVSRVGGRGAAAEGHSTAEGELDALASAMGEYFNTLDLDLDGPRLRFLSLSFEGTSARDGRV-KLELSIVVPKLP 813
+ V+ LL G L V+G GW + +G + R + LG +D+G + I F T P+G+A +VF++ DFGN H +++ + G+ F F V +D G ++ G W + R ++ + + A + G +A+ +G++FN L LDLDGP + F S+ RD V + L++ + K+P
Sbjct: 115 IDAKVDCNTFGLLGGVLNGFLVRGLGWVTPMGMSVRLFEISLGETRIDIGNAIATQQIVF-TSTPTGSARLVFNSADFGNLFRHPLMKKIASTAVQGQRFDFDPHTVDIDTSVGRQGVIRVSGIWHGDGNRYDITVEPNEYGRVNVTASLVLPENELQFTNGVPQYTAAASVVANGLGQFFNNLSLDLDGPVMTFRSMQVR--KGRDAEVIDMMLNLKLMKMP 334
BLAST of mRNA_H-paniculata_contig4863.11990.1 vs. uniprot
Match: A0A7S0A0N1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A0N1_9DINO) HSP 1 Score: 62.4 bits (150), Expect = 2.760e-8 Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 1
Query: 112 ATACRVLKLV--LRNGREAHVSCSVESEGLDLLQGRLRAASVKGRGWASRLGFTARTIAVDLGNASVDVGALFHRRAIEFR---TPPPSGTAVVVFDAVDFGNFLAHKFVRRAT--LAGRDFMFQRGDVFVDPV 492
++ R+L+L+ L R + + V+S +LL+GR+ A + G GW ++ G TAR + V A+++ AL +R + R T P G A V+FDA+DFGNFL + V + + R +F+R V VD V
Sbjct: 14 SSVARLLELLVPLHLRRHSGIRAVVQSRLGELLRGRVDAVHLSGEGWQTKAGLTARRLTV----AALEGAALEYRDVLTGRITLTAPTLGWAEVLFDAIDFGNFLLYGPVAASAPEVGSRRMVFERHGVEVDVV 143 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4863.11990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4863.11990.1 >prot_H-paniculata_contig4863.11990.1 ID=prot_H-paniculata_contig4863.11990.1|Name=mRNA_H-paniculata_contig4863.11990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=253bp MRCSTAPLIEATACRVLKLVLRNGREAHVSCSVESEGLDLLQGRLRAASVback to top mRNA from alignment at H-paniculata_contig4863:4918..8186+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4863.11990.1 ID=mRNA_H-paniculata_contig4863.11990.1|Name=mRNA_H-paniculata_contig4863.11990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3269bp|location=Sequence derived from alignment at H-paniculata_contig4863:4918..8186+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4863:4918..8186+ >mRNA_H-paniculata_contig4863.11990.1 ID=mRNA_H-paniculata_contig4863.11990.1|Name=mRNA_H-paniculata_contig4863.11990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at H-paniculata_contig4863:4918..8186+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |